Ec-27_006340.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006340.1
Unique NameEc-27_006340.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length583
Homology
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BLAST of Ec-27_006340.1 vs. uniprot
Match: D8LAU6_ECTSI (rRNA-processing protein EFG1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU6_ECTSI)

HSP 1 Score: 869 bits (2245), Expect = 9.670e-314
Identity = 582/582 (100.00%), Postives = 582/582 (100.00%), Query Frame = 1 
Query:    1 MPHTNRARRADHYRSIDGAGSSGXXXXXXXXXXXXXXXXXXXXSHQEQDGGALDYNHDTNVKASERYGGRSPGAXXXXXXXXXXXRXXXGARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKNPSAKNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPLGKGKEGPPRAQRSHVRFLKEALVRGEAAGWTEFQENLDKFVTGGGEGGRPKVAVDAAAAAEEGDVKRNKGIGALPVVAQQKLWDDGEDNSSAEGXXXXXXXXXXXXXXXGDGVAGQQGAGKDAAPAARGKKVKRQPTESGSGSWEPEQGEAAGDSSDSAGELSGDEGFGAAASDEDDAYSFAEARMRWASGGGGSTSGRSDGSDXXXXXXXXSVGDIYADALARSNGGGDVTREDAPAGKTVVAAGGGAVDGVTSRVDGGVNGGEGGLLLVDGARDEDSPRATKDPRVKRTQQAPGGHGYRTGVAAGEGGEGLQAPEGPHLAAEAEGEGEEQ 1746
            MPHTNRARRADHYRSIDGAGSSGXXXXXXXXXXXXXXXXXXXXSHQEQDGGALDYNHDTNVKASERYGGRSPGAXXXXXXXXXXXRXXXGARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKNPSAKNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPLGKGKEGPPRAQRSHVRFLKEALVRGEAAGWTEFQENLDKFVTGGGEGGRPKVAVDAAAAAEEGDVKRNKGIGALPVVAQQKLWDDGEDNSSAEGXXXXXXXXXXXXXXXGDGVAGQQGAGKDAAPAARGKKVKRQPTESGSGSWEPEQGEAAGDSSDSAGELSGDEGFGAAASDEDDAYSFAEARMRWASGGGGSTSGRSDGSDXXXXXXXXSVGDIYADALARSNGGGDVTREDAPAGKTVVAAGGGAVDGVTSRVDGGVNGGEGGLLLVDGARDEDSPRATKDPRVKRTQQAPGGHGYRTGVAAGEGGEGLQAPEGPHLAAEAEGEGEEQ
Sbjct:    1 MPHTNRARRADHYRSIDGAGSSGXXXXXXXXXXXXXXXXXXXXSHQEQDGGALDYNHDTNVKASERYGGRSPGAXXXXXXXXXXXRXXXGARSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGKNPSAKNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPLGKGKEGPPRAQRSHVRFLKEALVRGEAAGWTEFQENLDKFVTGGGEGGRPKVAVDAAAAAEEGDVKRNKGIGALPVVAQQKLWDDGEDNSSAEGXXXXXXXXXXXXXXXGDGVAGQQGAGKDAAPAARGKKVKRQPTESGSGSWEPEQGEAAGDSSDSAGELSGDEGFGAAASDEDDAYSFAEARMRWASGGGGSTSGRSDGSDXXXXXXXXSVGDIYADALARSNGGGDVTREDAPAGKTVVAAGGGAVDGVTSRVDGGVNGGEGGLLLVDGARDEDSPRATKDPRVKRTQQAPGGHGYRTGVAAGEGGEGLQAPEGPHLAAEAEGEGEEQ 582
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BLAST of Ec-27_006340.1 vs. uniprot
Match: A0A6H5JQ59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ59_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.890e-17
Identity = 54/66 (81.82%), Postives = 55/66 (83.33%), Query Frame = 2 
Query:  242 AGELVAVGAERGREVAAQVGVVAVDAEEPRRKPAAAAV-E*PVAQQQQDEEKERARTLPRRTASGV 436
            AGELVAVGAERGRE AA  GVVAVDAEEPRRKP      E PV +QQQDEEKERARTLPRRTASGV
Sbjct:   54 AGELVAVGAERGREAAAPAGVVAVDAEEPRRKPXXXXXXEQPVPKQQQDEEKERARTLPRRTASGV 119
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BLAST of Ec-27_006340.1 vs. uniprot
Match: A0A7S1CB15_9STRA (rRNA-processing protein EFG1 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB15_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.160e-14
Identity = 56/149 (37.58%), Postives = 86/149 (57.72%), Query Frame = 1 
Query:  403 KNPSAKNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKL----KGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPLGKGKEGPPRAQRSHVRFLKEALVRGEAAG 837
            K PS KNR+RS+ RL+N P +  + R   +R +  LE K++E  + ERER +A +YHK KFF+R+K +RR+A+    L      +  EAA  EL+R     EADL+Y+ ++P+ +KY+ L   +    +A     R ++EA      AG
Sbjct:    8 KTPSLKNRMRSVRRLLNNPKLTGQARKDKERLLRRLEAKLAEGAQGERERKIARRYHKVKFFERKKVVRRIARAQAALAAADSAEAREAASTELKR----HEADLEYITWYPRHEKYVALFPKQRDDAKAAAKRAR-MREAAHANAVAG 151
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BLAST of Ec-27_006340.1 vs. uniprot
Match: A0A7S2RJF1_9STRA (rRNA-processing protein EFG1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJF1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 7.500e-13
Identity = 55/150 (36.67%), Postives = 87/150 (58.00%), Query Frame = 1 
Query:  397 KGKNPSAKNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPLGKGKEGPPRAQRSH-----VRFLKEALVRGEA 831
            K K PS KN+IRSL RL++K  ++ E R  ++ ++ EL  +V ++++++ ER  A +YHK KFF+RRK +RRL  + ++L    + +    L+ +    + D+ YV YFP DKKY+ L         A+R        R  K A++RGEA
Sbjct:    9 KKKTPSRKNQIRSLRRLLSKEDLDAELRKSIESKLGELGEQVVDKQQEDLERKRAQRYHKVKFFERRKLMRRLEAVKKQLSKAADTSEVTTLKDELVRLDEDMTYVRYFPNDKKYISLFATDVDEATARRRERFRDLARQNKAAVLRGEA 158
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BLAST of Ec-27_006340.1 vs. uniprot
Match: A0A7R9UYT8_DIALT (rRNA-processing protein EFG1 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UYT8_DIALT)

HSP 1 Score: 77.0 bits (188), Expect = 1.440e-12
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1 
Query:  403 KNPSA---KNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPLGKGKEGPPRAQRSHVRFLKEALVRGEAAG 837
            K PS    K ++RS+ R +N+P +  E +   +  + +L   + + ++   E   A KYHK KFF+RRK  RR+ Q  RKL    + A RAELER+ D    DL+Y+ YFP + KYL L   + G     +   R L+E + +  A G
Sbjct:   12 KRPSVTHVKKQMRSVQRTLNRPELPAEAKAKHEAALAKLNDDLRKAKRSRLESHRATKYHKVKFFERRKCERRIGQTERKLAAASDPAERAELERQLDAHRLDLQYIRYFPPEHKYLSLYPTEGGENDFVQKRKRKLRELVAKRIAEG 159
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BLAST of Ec-27_006340.1 vs. uniprot
Match: A0A7S0IE89_MICPS (rRNA-processing protein EFG1 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IE89_MICPS)

HSP 1 Score: 78.6 bits (192), Expect = 4.970e-12
Identity = 51/122 (41.80%), Postives = 75/122 (61.48%), Query Frame = 1 
Query:  400 GKNPSAKNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKGDIE--EAARAELERKRDTEEADLKYVLYFPKDKKYLPLGKG 759
            GK  S KN++R++ RL+ + G+ E+ RL  QR++E+LEG   E ++ ERER +A+KYHK KFF+R K  R + ++ +    +    +A   ELE  RD    DL YV  FPK  KY+ + KG
Sbjct:   10 GKKVSTKNQMRNIQRLLKREGLPEKLRLEKQRELEKLEGIFKENKQAERERKMAVKYHKVKFFERVKLTRAIEKLEKANPDERRRPDAVTRELESLRD----DLHYVTNFPKGYKYVSVLKG 127
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BLAST of Ec-27_006340.1 vs. uniprot
Match: R7SXP4_DICSQ (rRNA-processing protein EFG1 n=1 Tax=Dichomitus squalens (strain LYAD-421) TaxID=732165 RepID=R7SXP4_DICSQ)

HSP 1 Score: 76.3 bits (186), Expect = 1.450e-11
Identity = 45/116 (38.79%), Postives = 73/116 (62.93%), Query Frame = 1 
Query:  427 IRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKGDIEEAA--------RAELERKRDTEEADLKYVLYFPKDKKYLPL 750
            +R   RL+ K  +  + R+  +R+++ LE  +++ E+   ER+LA +YHK KFF+R+K LR++AQ+ R+LKGD E+          R +LE++      DL YVL++PK KKY+ L
Sbjct:   51 LRQTRRLLAKDSLAADVRVKTERRLKSLEADLAKAERARVERSLAARYHKVKFFERQKLLRKIAQVKRQLKGDGEDGEGETLGKKERKKLEKRLGELRVDLNYVLHYPKTKKYISL 166
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BLAST of Ec-27_006340.1 vs. uniprot
Match: A0A8H3CYQ9_9AGAM (rRNA-processing protein EFG1 n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3CYQ9_9AGAM)

HSP 1 Score: 75.5 bits (184), Expect = 1.880e-11
Identity = 48/142 (33.80%), Postives = 87/142 (61.27%), Query Frame = 1 
Query:  418 KNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKG-DIEEAARAELERKRDTEEADLKYVLYFPKDKKYL---PLGKGKEGPPRAQRSHVRFL-KEALVRGE 828
            K+ IR   RL+ K  +  + R+  +R+++ LE  +++ E +++ERT+A++YHK KFFD+RK  R++ Q+ R L+G ++++  R +L+++  +   DL Y+L +PK  KY+   P  +  +      R   R L +EA+ RGE
Sbjct:   40 KSAIRQTRRLLAKDNLAADIRIQSERRLKSLETDLAKAEIRKKERTMAVRYHKIKFFDKRKVTRKIGQVKRALEGSELDKKERKKLQKELLSHRVDLNYILNYPKLDKYIALYPSSESNDDQTDKLREERRLLVREAMERGE 181
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BLAST of Ec-27_006340.1 vs. uniprot
Match: A0A8K0XC05_9AGAM (Uncharacterized protein n=1 Tax=Phlebopus sp. FC_14 TaxID=2615122 RepID=A0A8K0XC05_9AGAM)

HSP 1 Score: 75.1 bits (183), Expect = 2.910e-11
Identity = 54/150 (36.00%), Postives = 81/150 (54.00%), Query Frame = 1 
Query:  418 KNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPLGK-----GKEGPPRA-------QRSHVRFL-KEALVRGE 828
            K+ +R   RL+ K  +    R+  +R+++ LE  +S  E   +ERTLA++YHK KFF+R+K LRR+ Q  RKL        + ELE     +  DL Y++++PK KKY+ L       G   P  A       +RS+VR L +  + RGE
Sbjct:   51 KSSLRQAKRLLAKENLAANVRVETERRLKALEADLSRAEDARKERTLAVRYHKVKFFERQKVLRRITQTKRKL-STASNTQKEELELALADQRVDLNYIVHYPKTKKYISLFPPDVRFGTAAPATAATADENDERSNVRALIRSQMARGE 199
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BLAST of Ec-27_006340.1 vs. uniprot
Match: A0A550CVU8_9AGAR (rRNA-processing protein EFG1 n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CVU8_9AGAR)

HSP 1 Score: 74.3 bits (181), Expect = 3.980e-11
Identity = 45/111 (40.54%), Postives = 73/111 (65.77%), Query Frame = 1 
Query:  418 KNRIRSLTRLMNKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRKALRRLAQIHRKLKGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPL 750
            K+ +R   RL+ K  I  + R   +R+V+ LEG++ + E  ++ERTLA KYHK KFF+R+KALR++ Q+ R+L    ++A   +L+ +   +  DL YVL++PK +KY+ L
Sbjct:   43 KSSLRQARRLLAKDNINADVRNTTERRVKALEGELEKAETAKKERTLAAKYHKVKFFERQKALRKVQQLKRELTDSPDDA---DLQSRLFEQRVDLNYVLHYPKLQKYISL 150
The following BLAST results are available for this feature:
BLAST of Ec-27_006340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAU6_ECTSI9.670e-314100.00rRNA-processing protein EFG1 n=1 Tax=Ectocarpus si... [more]
A0A6H5JQ59_9PHAE2.890e-1781.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1CB15_9STRA1.160e-1437.58rRNA-processing protein EFG1 (Fragment) n=1 Tax=Bi... [more]
A0A7S2RJF1_9STRA7.500e-1336.67rRNA-processing protein EFG1 n=1 Tax=Rhizochromuli... [more]
A0A7R9UYT8_DIALT1.440e-1235.81rRNA-processing protein EFG1 n=1 Tax=Diacronema lu... [more]
A0A7S0IE89_MICPS4.970e-1241.80rRNA-processing protein EFG1 n=1 Tax=Micromonas pu... [more]
R7SXP4_DICSQ1.450e-1138.79rRNA-processing protein EFG1 n=1 Tax=Dichomitus sq... [more]
A0A8H3CYQ9_9AGAM1.880e-1133.80rRNA-processing protein EFG1 n=1 Tax=Rhizoctonia s... [more]
A0A8K0XC05_9AGAM2.910e-1136.00Uncharacterized protein n=1 Tax=Phlebopus sp. FC_1... [more]
A0A550CVU8_9AGAR3.980e-1140.54rRNA-processing protein EFG1 n=1 Tax=Auriculariops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5850464..5854304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score881.3
Seed ortholog evalue2.4e-253
Seed eggNOG ortholog2880.D8LAU6
Length1749
Hectar predicted targeting categoryother localisation
Gene idEc-27_006340.1
EggNOG free text desc.rRNA processing
EggNOG OGsKOG4484@1,KOG4484@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006340Ec-27_006340Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5847766..5854421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006340.1Ec-27_006340.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5850464..5854304 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006340.1.6Ec-27_006340.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5850464..5850774 -
Ec-27_006340.1.5Ec-27_006340.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5851088..5851817 -
Ec-27_006340.1.4Ec-27_006340.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5852130..5852195 -
Ec-27_006340.1.3Ec-27_006340.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5852672..5852747 -
Ec-27_006340.1.2Ec-27_006340.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5853214..5853320 -
Ec-27_006340.1.1Ec-27_006340.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5853846..5854304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006340.1CDS:Ec-27_006340.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5850464..5850774 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006340.1 ID=Ec-27_006340.1|Name=Ec-27_006340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=583bp
MPHTNRARRADHYRSIDGAGSSGNNSSSATTSFNRNHGGGRKRSHQEQDG
GALDYNHDTNVKASERYGGRSPGAGGGGGGGWGAGRGRGGARSGGGGTGR
GGGGGRGGAAEEAGGGSGGIAGSSTAAGRGKGKGKNPSAKNRIRSLTRLM
NKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRK
ALRRLAQIHRKLKGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPL
GKGKEGPPRAQRSHVRFLKEALVRGEAAGWTEFQENLDKFVTGGGEGGRP
KVAVDAAAAAEEGDVKRNKGIGALPVVAQQKLWDDGEDNSSAEGEGTGKS
DAEESESDSGDGVAGQQGAGKDAAPAARGKKVKRQPTESGSGSWEPEQGE
AAGDSSDSAGELSGDEGFGAAASDEDDAYSFAEARMRWASGGGGSTSGRS
DGSDTDGHDSDGSVGDIYADALARSNGGGDVTREDAPAGKTVVAAGGGAV
DGVTSRVDGGVNGGEGGLLLVDGARDEDSPRATKDPRVKRTQQAPGGHGY
RTGVAAGEGGEGLQAPEGPHLAAEAEGEGEEQ*
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spliced messenger RNA

>Ec-27_006340.1 ID=Ec-27_006340.1|Name=Ec-27_006340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1749bp|location=Sequence derived from alignment at chr_27:5850464..5854304- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCACACGAATCGCGCGAGGCGCGCCGACCATTACCGCTCTATCGA
TGGCGCCGGCAGCAGCGGCAACAACAGCAGCTCAGCAACGACCAGTTTCA
ACAGAAACCATGGCGGCGGCAGGAAGCGCTCGCACCAAGAGCAAGATGGT
GGTGCCCTCGACTACAACCACGACACCAATGTCAAAGCCTCCGAGCGCTA
CGGTGGGCGTAGCCCTGGTGCCGGCGGCGGCGGCGGCGGCGGCTGGGGAG
CTGGTCGCGGTAGGGGCGGAGCGAGGTCGGGAGGTGGCGGCACAGGTAGG
GGTGGTGGCGGTGGACGCGGAGGAGCCGCGGAGGAAGCCGGCGGCGGCAG
CGGTGGAATAGCCGGTAGCTCAACAGCAGCAGGACGAGGAAAAGGAAAGG
GCAAGAACCCTTCCGCGAAGAACCGCATCCGGAGTCTAACGCGGCTGATG
AACAAACCGGGCATCGAAGAGGAACAGCGGTTACACTTGCAGCGGCAGGT
TGAAGAGCTAGAGGGAAAGGTGTCGGAGCGTGAAAAGCAGGAGCGAGAAC
GAACTCTTGCCATCAAGTACCACAAGGCAAAGTTTTTCGACCGCAGGAAA
GCTCTCCGCCGACTGGCCCAAATTCACCGCAAGTTGAAGGGGGACATCGA
AGAGGCCGCGCGGGCGGAGCTGGAGCGAAAACGAGATACCGAGGAAGCAG
ACCTCAAGTACGTGCTCTACTTCCCCAAGGACAAGAAATACCTCCCGCTG
GGAAAGGGGAAAGAGGGCCCCCCACGTGCCCAGCGGTCCCATGTGCGCTT
CCTGAAGGAGGCGTTGGTGCGAGGGGAGGCAGCCGGATGGACGGAGTTCC
AGGAGAACCTCGACAAGTTTGTCACCGGCGGCGGGGAGGGCGGCCGGCCT
AAGGTAGCCGTGGACGCCGCCGCTGCCGCGGAGGAGGGCGATGTCAAACG
GAACAAGGGAATCGGGGCTCTTCCTGTGGTGGCGCAGCAAAAGCTGTGGG
ATGACGGGGAGGACAACAGCAGCGCGGAAGGGGAGGGCACGGGAAAAAGT
GACGCGGAAGAAAGCGAATCAGATTCCGGGGATGGTGTGGCCGGCCAACA
AGGAGCGGGAAAGGACGCTGCTCCAGCGGCCCGCGGAAAGAAGGTCAAGA
GGCAGCCAACGGAGTCTGGATCGGGGAGTTGGGAGCCGGAGCAAGGAGAA
GCAGCAGGGGATAGCTCCGATTCGGCGGGGGAACTCAGCGGCGACGAGGG
TTTCGGGGCCGCCGCCAGCGACGAAGACGACGCTTATAGCTTCGCCGAGG
CGAGGATGAGGTGGGCTAGCGGCGGCGGTGGGAGCACAAGCGGGCGCAGT
GACGGTAGTGACACCGACGGCCACGACAGCGACGGAAGCGTCGGGGACAT
TTACGCCGATGCTCTCGCGAGATCTAACGGCGGCGGAGACGTGACGCGCG
AAGACGCGCCAGCGGGGAAAACCGTGGTGGCGGCCGGAGGGGGCGCGGTG
GACGGGGTGACCAGCAGGGTGGATGGGGGGGTCAACGGGGGCGAGGGCGG
TCTGCTTTTGGTGGACGGGGCACGGGACGAGGATTCACCGCGAGCAACAA
AAGATCCAAGGGTGAAGCGAACGCAACAGGCACCGGGCGGGCATGGATAC
CGCACGGGCGTGGCGGCGGGGGAAGGCGGGGAGGGTTTGCAGGCACCGGA
GGGACCGCATCTGGCCGCGGAGGCCGAGGGAGAGGGAGAGGAGCAGTAG
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protein sequence of Ec-27_006340.1

>Ec-27_006340.1 ID=Ec-27_006340.1|Name=Ec-27_006340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=583bp
MPHTNRARRADHYRSIDGAGSSGNNSSSATTSFNRNHGGGRKRSHQEQDG
GALDYNHDTNVKASERYGGRSPGAGGGGGGGWGAGRGRGGARSGGGGTGR
GGGGGRGGAAEEAGGGSGGIAGSSTAAGRGKGKGKNPSAKNRIRSLTRLM
NKPGIEEEQRLHLQRQVEELEGKVSEREKQERERTLAIKYHKAKFFDRRK
ALRRLAQIHRKLKGDIEEAARAELERKRDTEEADLKYVLYFPKDKKYLPL
GKGKEGPPRAQRSHVRFLKEALVRGEAAGWTEFQENLDKFVTGGGEGGRP
KVAVDAAAAAEEGDVKRNKGIGALPVVAQQKLWDDGEDNSSAEGEGTGKS
DAEESESDSGDGVAGQQGAGKDAAPAARGKKVKRQPTESGSGSWEPEQGE
AAGDSSDSAGELSGDEGFGAAASDEDDAYSFAEARMRWASGGGGSTSGRS
DGSDTDGHDSDGSVGDIYADALARSNGGGDVTREDAPAGKTVVAAGGGAV
DGVTSRVDGGVNGGEGGLLLVDGARDEDSPRATKDPRVKRTQQAPGGHGY
RTGVAAGEGGEGLQAPEGPHLAAEAEGEGEEQ*
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mRNA from alignment at chr_27:5850464..5854304-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006340.1 ID=Ec-27_006340.1|Name=Ec-27_006340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3841bp|location=Sequence derived from alignment at chr_27:5850464..5854304- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGCACACGAATCGCGCGAGGCGCGCCGACCATTACCGCTCTATCGA
TGGCGCCGGCAGCAGCGGCAACAACAGCAGCTCAGCAACGACCAGTTTCA
ACAGAAACCATGGCGGCGGCAGGAAGCGCTCGCACCAAGAGCAAGATGGT
GGTGCCCTCGACTACAACCACGACACCAATGTCAAAGCCTCCGAGCGCTA
CGGTGGGCGTAGCCCTGGTGCCGGCGGCGGCGGCGGCGGCGGCTGGGGAG
CTGGTCGCGGTAGGGGCGGAGCGAGGTCGGGAGGTGGCGGCACAGGTAGG
GGTGGTGGCGGTGGACGCGGAGGAGCCGCGGAGGAAGCCGGCGGCGGCAG
CGGTGGAATAGCCGGTAGCTCAACAGCAGCAGGACGAGGAAAAGGAAAGG
GCAAGAACCCTTCCGCGAAGAACCGCATCCGGAGTCTAACGCGGCTGATG
AACAAACCGGTGAGAGATTGACGCATTCTCCGGATTTGGATGTGTCGTCG
TGCTGTGGTTGTACCAGCGAGAGGCAGCAGCTGCGGGACACCACGGGCAC
AGCTGTTGGCCCAGTCGTTGGTTGGCTTGTGTCAGCGACGTGCCTTCCGG
GTACCATGTACCGATCACGCGCGTATCGTATGTACAGTTCCTAAGATACC
CGAACGCTGAGCTTGAAAATTTCTGTGCCAATGAATGGCACTGCATTCCC
GCCTGGCAAGTCGCATGATTGTTGGAAGGCTCCAATCCTCGTGCCGCAAC
TTGCCAACTCCTGAGGTGCTTTCGCGGGGTAAAGTTGAAACCAAGAGAAT
TAGAGAGCGCTCCAAGATCGTGCAGACGTGTGATGGGATCTGCAATACCA
CCTGGCTCCTTTGCGAACGTTTCCCAGCACCACACCTTCACTCAAATTCC
ATCTTCGTCTCCGGCCTTTGCTCAATTCGAACACACGATCTGTGCGTCCG
GTGCGTGTCTCTATACGTTGGGGCGTGTGCTCAGGGCATCGAAGAGGAAC
AGCGGTTACACTTGCAGCGGCAGGTTGAAGAGCTAGAGGGAAAGGTGTCG
GAGCGTGAAAAGCAGGAGCGAGAACGAACTCTTGCCATCAAGTGAGTCCT
TTGCTGTTGTCGTGAAACATGTCACTGCATGTTGGTATGCCTGTGGAGGG
CAGGTGGGAAAGAGGAATACGCCGTGGAGACTCGCCCGCTCTATTACGCT
TTGCTTAGCAATGGCACCCATACCCGGAGGTTCACTGGTTGGGAACAGGT
TGATGGTAACGTAGATTTCGTTGCAGTCATGCTGTCGGATCTGTTTGTTT
GTCTGGTGTGTGTGCCGAAGGGTACTCGACACCGCCAAGTACGGCAACAT
GTCGACTTTGAAAGGCTACCCCGCCATCGAGGCGCAGCATCCACGCCGCT
GTATCCGGTTGCGCTCAACCATTGTATCGGCTCACGGCCTGGATCTTAAC
GCTTGCAGAAGTATGGACCAAGATTCGGTTGAAGTGGCCATCGTAGGGCT
AAGCCTGCTTGCTCGGCACTACCCTGTCCCCCGTCCCTGCCCTACTGCGG
CGTTCAGGTACCACAAGGCAAAGTTTTTCGACCGCAGGAAAGCTCTCCGC
CGACTGGCCCAAATTCACCGCAAGTTGAAGGGGGTGAGTTACCAGCAGGG
GTGGGTGGGTATTTGTGGTCCCTCCTCCCCCGAGATTTCTATGTACCGCG
CAGCAGTTGCAGATTACGGAGCTCGTGACTCAAGCGATAACGTTGATGTT
TGCAGCTTTGTATTTCACGTCATGGGTTTGCTCCAACGAATTCGGCGTTG
TCCCAACCACCCGAACAACATTTCTTCAGTCCTAGGCTGGTCACGAAGTA
CAGTTCCAATGTGGAAGAGGTTTCGTGTCGGAAGCATCATTAATGGTGTG
GTTGGTGACGATGAGCATGCGCGTTCTCCCCGTTGTCAGGGAACAAGAAA
CCCTGTTTGTTGAAAGTCCTCACCAGCTCACCCATGTCTGTGCTTTACAG
GGGGAGGGTGGTCTCGTCCTAAAAATGATGGAAGAATCAACAGAACCCGC
TTGTGTCCCGCCACCCCGTGTCCTTGTTGCCCTTCCTCCAACGGCGCGAT
GTGATGCAGGACATCGAAGAGGCCGCGCGGGCGGAGCTGGAGCGAAAACG
AGATACCGAGGAAGCAGACCTCAAGGTACCGCCTACACGTGATCATGGGC
TGCCAACGGAGTTGTAGCTACTATTGCCAAGATTTATGTAGGTGTTGCCG
GCGGCGGTCCGCTTGTGCTCAGGTATTGGGAGGAACATTGCCGGTGGCGC
GCCGTCACTCAACGTACCTATGCTCCTGGCAGAAGTTCCACCTGTTTTGA
AGCAGAGAAAAACACGAATTGGCCACGCGCTCCCGCTCGTGAAGCCTAAG
CGCTGAATCCTTATTTTTCATTTATTCCCGGAACTTACGTTTGCCCGCTT
TTTCCCAACCGGCCACCCCCGACACCCACCACAACAGTACGTGCTCTACT
TCCCCAAGGACAAGAAATACCTCCCGCTGGGAAAGGGGAAAGAGGGCCCC
CCACGTGCCCAGCGGTCCCATGTGCGCTTCCTGAAGGAGGCGTTGGTGCG
AGGGGAGGCAGCCGGATGGACGGAGTTCCAGGAGAACCTCGACAAGTTTG
TCACCGGCGGCGGGGAGGGCGGCCGGCCTAAGGTAGCCGTGGACGCCGCC
GCTGCCGCGGAGGAGGGCGATGTCAAACGGAACAAGGGAATCGGGGCTCT
TCCTGTGGTGGCGCAGCAAAAGCTGTGGGATGACGGGGAGGACAACAGCA
GCGCGGAAGGGGAGGGCACGGGAAAAAGTGACGCGGAAGAAAGCGAATCA
GATTCCGGGGATGGTGTGGCCGGCCAACAAGGAGCGGGAAAGGACGCTGC
TCCAGCGGCCCGCGGAAAGAAGGTCAAGAGGCAGCCAACGGAGTCTGGAT
CGGGGAGTTGGGAGCCGGAGCAAGGAGAAGCAGCAGGGGATAGCTCCGAT
TCGGCGGGGGAACTCAGCGGCGACGAGGGTTTCGGGGCCGCCGCCAGCGA
CGAAGACGACGCTTATAGCTTCGCCGAGGCGAGGATGAGGTGGGCTAGCG
GCGGCGGTGGGAGCACAAGCGGGCGCAGTGACGGTAGTGACACCGACGGC
CACGACAGCGACGGAAGCGTCGGGGACATTTACGCCGATGCTCTCGCGAG
ATCTAACGGCGGCGGAGGCGCTTCAAAGGCGGTTCAGAGCGACCGGCGGC
GGGGTGGCAGTGACAACGACGGAGACAGCAGCAGTGACAGCGATGAGGAC
GGCAGCAGCGACAGCGGCGACACGGCAGAAGAGAAGCCAGCGTTAGCAGG
GAAGAGGAAGAGTCAGCCGACGGCAGCGCCCCCTTCGGTCCCGGAGGGCA
GCGAACATGAGGATAGCGGGGATGACATTGACCTCAAGGACGACTTCTTC
ATGGAAGAGAAGGGAAGCGGGGACGAAGAGCAAGCCCACCAAACGGGGGA
GTACACTACCGGTAAAAACGCACGCGCCAGACGTGACGCGCGAAGACGCG
CCAGCGGGGAAAACCGTGGTGGCGGCCGGAGGGGGCGCGGTGGACGGGGT
GACCAGCAGGGTGGATGGGGGGGTCAACGGGGGCGAGGGCGGTCTGCTTT
TGGTGGACGGGGCACGGGACGAGGATTCACCGCGAGCAACAAAAGATCCA
AGGGTGAAGCGAACGCAACAGGCACCGGGCGGGCATGGATACCGCACGGG
CGTGGCGGCGGGGGAAGGCGGGGAGGGTTTGCAGGCACCGGAGGGACCGC
ATCTGGCCGCGGAGGCCGAGGGAGAGGGAGAGGAGCAGTAG
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Coding sequence (CDS) from alignment at chr_27:5850464..5854304-

>Ec-27_006340.1 ID=Ec-27_006340.1|Name=Ec-27_006340.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1749bp|location=Sequence derived from alignment at chr_27:5850464..5854304- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGCACACGAATCGCGCGAGGCGCGCCGACCATTACCGCTCTATCGA
TGGCGCCGGCAGCAGCGGCAACAACAGCAGCTCAGCAACGACCAGTTTCA
ACAGAAACCATGGCGGCGGCAGGAAGCGCTCGCACCAAGAGCAAGATGGT
GGTGCCCTCGACTACAACCACGACACCAATGTCAAAGCCTCCGAGCGCTA
CGGTGGGCGTAGCCCTGGTGCCGGCGGCGGCGGCGGCGGCGGCTGGGGAG
CTGGTCGCGGTAGGGGCGGAGCGAGGTCGGGAGGTGGCGGCACAGGTAGG
GGTGGTGGCGGTGGACGCGGAGGAGCCGCGGAGGAAGCCGGCGGCGGCAG
CGGTGGAATAGCCGGTAGCTCAACAGCAGCAGGACGAGGAAAAGGAAAGG
GCAAGAACCCTTCCGCGAAGAACCGCATCCGGAGTCTAACGCGGCTGATG
AACAAACCGGGCATCGAAGAGGAACAGCGGTTACACTTGCAGCGGCAGGT
TGAAGAGCTAGAGGGAAAGGTGTCGGAGCGTGAAAAGCAGGAGCGAGAAC
GAACTCTTGCCATCAAGTACCACAAGGCAAAGTTTTTCGACCGCAGGAAA
GCTCTCCGCCGACTGGCCCAAATTCACCGCAAGTTGAAGGGGGACATCGA
AGAGGCCGCGCGGGCGGAGCTGGAGCGAAAACGAGATACCGAGGAAGCAG
ACCTCAAGTACGTGCTCTACTTCCCCAAGGACAAGAAATACCTCCCGCTG
GGAAAGGGGAAAGAGGGCCCCCCACGTGCCCAGCGGTCCCATGTGCGCTT
CCTGAAGGAGGCGTTGGTGCGAGGGGAGGCAGCCGGATGGACGGAGTTCC
AGGAGAACCTCGACAAGTTTGTCACCGGCGGCGGGGAGGGCGGCCGGCCT
AAGGTAGCCGTGGACGCCGCCGCTGCCGCGGAGGAGGGCGATGTCAAACG
GAACAAGGGAATCGGGGCTCTTCCTGTGGTGGCGCAGCAAAAGCTGTGGG
ATGACGGGGAGGACAACAGCAGCGCGGAAGGGGAGGGCACGGGAAAAAGT
GACGCGGAAGAAAGCGAATCAGATTCCGGGGATGGTGTGGCCGGCCAACA
AGGAGCGGGAAAGGACGCTGCTCCAGCGGCCCGCGGAAAGAAGGTCAAGA
GGCAGCCAACGGAGTCTGGATCGGGGAGTTGGGAGCCGGAGCAAGGAGAA
GCAGCAGGGGATAGCTCCGATTCGGCGGGGGAACTCAGCGGCGACGAGGG
TTTCGGGGCCGCCGCCAGCGACGAAGACGACGCTTATAGCTTCGCCGAGG
CGAGGATGAGGTGGGCTAGCGGCGGCGGTGGGAGCACAAGCGGGCGCAGT
GACGGTAGTGACACCGACGGCCACGACAGCGACGGAAGCGTCGGGGACAT
TTACGCCGATGCTCTCGCGAGATCTAACGGCGGCGGAGACGTGACGCGCG
AAGACGCGCCAGCGGGGAAAACCGTGGTGGCGGCCGGAGGGGGCGCGGTG
GACGGGGTGACCAGCAGGGTGGATGGGGGGGTCAACGGGGGCGAGGGCGG
TCTGCTTTTGGTGGACGGGGCACGGGACGAGGATTCACCGCGAGCAACAA
AAGATCCAAGGGTGAAGCGAACGCAACAGGCACCGGGCGGGCATGGATAC
CGCACGGGCGTGGCGGCGGGGGAAGGCGGGGAGGGTTTGCAGGCACCGGA
GGGACCGCATCTGGCCGCGGAGGCCGAGGGAGAGGGAGAGGAGCAGTAG
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Synonyms
The feature 'Ec-27_006340.1' has the following synonyms
Synonym
Esi0000_0033
Esi_0000_0033