Ec-27_006310.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006310.2
Unique NameEc-27_006310.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length212
Homology
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BLAST of Ec-27_006310.2 vs. uniprot
Match: D8LAV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV0_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 1.490e-124
Identity = 190/211 (90.05%), Postives = 190/211 (90.05%), Query Frame = 3 
Query:  474 MAELGGKRNRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRRRRPVPAAEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIPSEA 1106
            MAELGGKRNRFLMKNPENGDLNQYWYSKATIDAIV                     AEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIPSEA
Sbjct:    1 MAELGGKRNRFLMKNPENGDLNQYWYSKATIDAIV---------------------AEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIPSEA 190
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BLAST of Ec-27_006310.2 vs. uniprot
Match: A0A835YKM7_9STRA (Putative N6-adenine methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM7_9STRA)

HSP 1 Score: 235 bits (600), Expect = 1.190e-68
Identity = 117/205 (57.07%), Postives = 138/205 (67.32%), Query Frame = 3 
Query:  495 RNRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRRRRPVPAAEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAAT--KLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIPSE 1103
            +NRFL++NPE GDLNQYWYSK TI+A+V                      EV EFG  GTAFLSTPSIYFS   ++R KCKVFD+DT W KDPGFV +D+ K  D+P  L GTF MVV+DPPF+ R+VWE+Y  AT  +LLL+PGG   +L +TI EN   M ELL   PC FKPSIP+LVYQY LY NYDS  L   NPEIP +
Sbjct:    4 KNRFLVRNPEKGDLNQYWYSKGTIEALV---------------------LEVVEFGGEGTAFLSTPSIYFSTPAEIRQKCKVFDIDTAWKKDPGFVYFDFNKLDDVPADLHGTFAMVVIDPPFIMREVWEAYAMATAARLLLQPGGK--ILATTIAENEELMAELLDVKPCVFKPSIPHLVYQYKLYTNYDSPNLNQRNPEIPED 185
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BLAST of Ec-27_006310.2 vs. uniprot
Match: C1FFV8_MICCC (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=C1FFV8_MICCC)

HSP 1 Score: 207 bits (527), Expect = 4.270e-58
Identity = 107/204 (52.45%), Postives = 131/204 (64.22%), Query Frame = 3 
Query:  492 KRNRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRRRRPVPAAEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIP--ETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIP 1097
            K+NRFL    E  DLNQYWYS  TI A+    R +  +      R                AFLSTPS+YFSL +++RA+   FDLDT+W K+PG+V YD+ KP D    E L+GTFDMV++DPPF+TR+VWE YT   + LL+PGG   V+ STI ENAPFM+ELLG  P  F PSIP LVYQY LY +Y+SK L   NPEIP
Sbjct:   19 KKNRFLSTTKEVEDLNQYWYSNRTISAMA---RDVEDVCAAPETR---------------AAFLSTPSVYFSLSKEVRARSWCFDLDTQWQKEPGYVCYDFNKPIDFEGAEELKGTFDMVIIDPPFITREVWEKYTETARWLLKPGGH--VMASTIQENAPFMKELLGVDPQVFMPSIPTLVYQYYLYASYESKHLKDKNPEIP 202
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BLAST of Ec-27_006310.2 vs. uniprot
Match: A0A7S0SHX0_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SHX0_9CHLO)

HSP 1 Score: 210 bits (535), Expect = 4.710e-58
Identity = 115/216 (53.24%), Postives = 140/216 (64.81%), Query Frame = 3 
Query:  477 AELGG--KRNRFLMKNPENGDLNQYWYSKATIDAI-VDVDRCISQIVVPCRRRRPVPAAEVGEFGSGGT--AFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPET--LRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIPSE 1103
            AE GG  K+NRFL    E  DLNQYWYS  TI  + +DV+               V AAE       GT  AFLSTPS+YFSL +++RA+   FDLDT+W K+PG+V Y++  P D P    LRGTFDMV++DPPF+TR+VWE Y    + LLRPGG   V+ STI ENAPFM ELLG  P  F+PSIP LVYQY+LY +Y+SK L   NPEIP +
Sbjct:   96 AEGGGELKKNRFLSTTREVEDLNQYWYSNRTITHMALDVEE--------------VCAAE-------GTRAAFLSTPSVYFSLSKEVRARSWCFDLDTQWHKEPGYVCYNFQTPVDFPGAAELRGTFDMVIIDPPFITREVWEKYAETARFLLRPGGGGHVMASTIQENAPFMRELLGVEPQVFQPSIPTLVYQYALYASYESKNLGVKNPEIPDD 290
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BLAST of Ec-27_006310.2 vs. uniprot
Match: C1MQ67_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MQ67_MICPC)

HSP 1 Score: 207 bits (526), Expect = 5.890e-58
Identity = 111/206 (53.88%), Postives = 134/206 (65.05%), Query Frame = 3 
Query:  492 KRNRFLMKNPENGDLNQYWYSKATIDAIV-DV-DRCISQIVVPCRRRRPVPAAEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIP--ETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIP 1097
            K+NRFL    E  DLNQYWYS  TI A+  DV D+C S     C                    FLSTPS+YFSL++D RA+   FDLDT+WA++PGFV YD+  P      + L+GTFDMV++DPPF+TR+VWE YT   K LL+PGG   VL STI ENAPF++ELLG +P  F PSIP LVYQY LY +Y+SK LA  NPEIP
Sbjct:   19 KKNRFLSTTKEVEDLNQYWYSNRTIAAMASDVEDQCSSPDSKAC--------------------FLSTPSVYFSLNKDTRARSWCFDLDTQWAREPGFVKYDFNDPIGFDGFDDLKGTFDMVIIDPPFITREVWEKYTTTAKALLKPGGK--VLASTIQENAPFVKELLGVTPQVFMPSIPTLVYQYHLYASYESKFLAEKNPEIP 202
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BLAST of Ec-27_006310.2 vs. uniprot
Match: J9IRF9_9SPIT (N6-adenineMlase domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IRF9_9SPIT)

HSP 1 Score: 203 bits (517), Expect = 5.440e-57
Identity = 108/201 (53.73%), Postives = 132/201 (65.67%), Query Frame = 3 
Query:  498 NRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRRRRPVPAAEVGEFGSGGTAFLSTPSIYFSL-DRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIP 1097
            N FL KN EN DLNQYWYSK TI+ +                     A+E  +FG    AFLSTPS+YFSL +++++A  K FD D K+ KDP F+ YD+ KP+DIP  L   FDMVV+DPPF+TR+VWE YT A+K LL   G   +L STI EN  F+ ELLGA   +F+PSIPNLVYQYSLY NYDS+ L + NPEIP
Sbjct:    5 NPFLAKNKENADLNQYWYSKPTINFL---------------------ASECEQFGKK-IAFLSTPSVYFSLKNKEIKANSKCFDYDEKFGKDPNFIFYDFNKPEDIPRELEKQFDMVVIDPPFITREVWEKYTEASKFLLADDGK--ILLSTIDENEAFILELLGAKRRQFRPSIPNLVYQYSLYSNYDSEGLNNKNPEIP 181
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BLAST of Ec-27_006310.2 vs. uniprot
Match: A0A8J8NP72_HALGN (Uncharacterized protein n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NP72_HALGN)

HSP 1 Score: 203 bits (517), Expect = 5.620e-57
Identity = 108/201 (53.73%), Postives = 135/201 (67.16%), Query Frame = 3 
Query:  498 NRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRRRRPVPAAEVGEFGSGGTAFLSTPSIYFSL-DRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIP 1097
            N FL K+ E  D NQYWYSKATI+ +                     A+E  +FG    AFLSTPSIYFSL +++++A  +VFD DTK+ KDPGFV YD+ KP+DIP  L   FDMVV+DPPF+TR+VWE Y  A KL+L   G +++L STI EN  F++ELLGA    F+PSIPNLVYQYSLY NY+S+ L + NPEIP
Sbjct:    5 NPFLAKHKEKSDFNQYWYSKATINFM---------------------ASECEQFGQK-IAFLSTPSIYFSLKNKEIKAASRVFDFDTKFNKDPGFVFYDFNKPEDIPADLHNYFDMVVIDPPFITREVWEKYATAAKLILIKEGGKILL-STIDENEGFIDELLGAKRRAFRPSIPNLVYQYSLYSNYESEGLLAKNPEIP 182
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BLAST of Ec-27_006310.2 vs. uniprot
Match: A0A7S1G4D1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4D1_9STRA)

HSP 1 Score: 199 bits (506), Expect = 3.670e-55
Identity = 108/219 (49.32%), Postives = 130/219 (59.36%), Query Frame = 3 
Query:  492 KRNRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRRRRPVPAAEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARL-----------------VLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIP 1097
            KRNRFL++  E  DLNQYWYS  +I A+                     AAEV   G G   F+STPSIYFSL ++ R    VFDLDT+W KDPGFV YD+ +P++ PE LR  FDM+VVDPPF+TR+VWE Y    +LL +     +                  L STI ENA  MEELLG  P  FKPSIPNLVYQY+LY NY+S+ L+  NPEIP
Sbjct:    8 KRNRFLLRTKEKEDLNQYWYSAKSIAAM---------------------AAEVVATG-GKACFISTPSIYFSLTKEQREGNYVFDLDTQWEKDPGFVRYDFNEPENFPEELRHAFDMIVVDPPFITREVWEKYATTMRLLAKERSGEVDTGAGGEEEKKDEPPCRFLVSTIAENAEMMEELLGVKPQAFKPSIPNLVYQYNLYANYESEGLSVPNPEIP 204
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BLAST of Ec-27_006310.2 vs. uniprot
Match: A0A5B8MLU1_9CHLO (N6-adenine methyltransferase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MLU1_9CHLO)

HSP 1 Score: 197 bits (501), Expect = 1.160e-54
Identity = 105/212 (49.53%), Postives = 129/212 (60.85%), Query Frame = 3 
Query:  471 VMAELGGKRNRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRRRRPVPAAEVGEFGSGGTAFLSTPSIYFSLDR--DLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIPS 1100
             MA  GG  N FL K  E  DLNQYWYS  TI  +VD    ++     C                    FLSTPSIYFSL +  ++R +  +FDLD +WA  P +  YDY  P+ IP+ L GTFD +V+DPPF+T +VWE Y  ATK+LL P G   VL +TI ENAP +E+LLG  P +F PSIP+LVYQY+LY NY+S  LA  NPEIPS
Sbjct:    2 AMAAPGGGMNAFLTKYGEKEDLNQYWYSNHTIKVMVD--EVVANATKAC--------------------FLSTPSIYFSLPKKSEVRKQSWLFDLDDQWANLPNYFKYDYNFPEQIPKELHGTFDYIVIDPPFITEEVWEKYGEATKMLLSPNGK--VLLTTIQENAPMLEKLLGVKPRQFAPSIPHLVYQYALYTNYESDPLAEVNPEIPS 189
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BLAST of Ec-27_006310.2 vs. uniprot
Match: A0A7S1IZX2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IZX2_9EUGL)

HSP 1 Score: 197 bits (502), Expect = 1.280e-54
Identity = 103/216 (47.69%), Postives = 129/216 (59.72%), Query Frame = 3 
Query:  459 SKLSVMAELGGKRNRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRRRRPVPAAEVGEFGSGGTAFLSTPSIYFSLDRD-LRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIPSE 1103
            ++L     +  K+NRFL++NPE  + NQYWYS +TI  I+                     AEV   G+   AF+STPS+YFSL    L+   KV D D KW KD GFV Y++ +P ++P  L   FD +VVDPPF+T +VW  Y    K LL+PGG  +VLCSTI ENA  M+E+LG  P  FKPSIPNLVYQY LY NY    L S NPEIP +
Sbjct:   12 ARLRETRTMSEKKNRFLLRNPEKAEHNQYWYSDSTIRNII---------------------AEVEASGATKAAFVSTPSLYFSLQSAALKQTSKVLDFDKKWEKDLGFVFYNFEEPTNLPADLEHQFDYIVVDPPFITAEVWAQYATTVKFLLKPGG--MVLCSTIAENASMMKEILGLEPIAFKPSIPNLVYQYLLYSNYPVTVLGSPNPEIPED 204
The following BLAST results are available for this feature:
BLAST of Ec-27_006310.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAV0_ECTSI1.490e-12490.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKM7_9STRA1.190e-6857.07Putative N6-adenine methyltransferase-domain-conta... [more]
C1FFV8_MICCC4.270e-5852.45Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
A0A7S0SHX0_9CHLO4.710e-5853.24Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
C1MQ67_MICPC5.890e-5853.88Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
J9IRF9_9SPIT5.440e-5753.73N6-adenineMlase domain containing protein n=1 Tax=... [more]
A0A8J8NP72_HALGN5.620e-5753.73Uncharacterized protein n=2 Tax=Halteria grandinel... [more]
A0A7S1G4D1_9STRA3.670e-5549.32Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5B8MLU1_9CHLO1.160e-5449.53N6-adenine methyltransferase n=1 Tax=Chloropicon p... [more]
A0A7S1IZX2_9EUGL1.280e-5447.69Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5831999..5836343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.0
Seed ortholog evalue1.2e-104
Seed eggNOG ortholog2880.D8LAV0
Preferred nameEFM5
Length2668
KEGG koko:K03953,ko:K12382,ko:K16546
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04142,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04142,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
Gene idEc-27_006310.2
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG3350@1,KOG3350@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006310Ec-27_006310Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5831999..5836343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006310.2Ec-27_006310.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5832473..5834785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006310.2.1Ec-27_006310.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5831999..5832523 +
Ec-27_006310.2.2Ec-27_006310.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5832895..5832949 +
Ec-27_006310.2.3Ec-27_006310.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5833305..5833471 +
Ec-27_006310.2.4Ec-27_006310.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5833775..5833903 +
Ec-27_006310.2.5Ec-27_006310.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5834552..5836343 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0063105UTR:Ec-27_006310.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 5831999..5832472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006310.2CDS:Ec-27_006310.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5832473..5832523 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0063103UTR:Ec-27_006310.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 5834786..5836343 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006310.2 ID=Ec-27_006310.2|Name=Ec-27_006310.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=212bp
MAELGGKRNRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRR
RRPVPAAEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDP
GFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPG
GARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRL
ASCNPEIPSEA*
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spliced messenger RNA

>Ec-27_006310.2 ID=Ec-27_006310.2|Name=Ec-27_006310.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2668bp|location=Sequence derived from alignment at chr_27:5831999..5836343+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCTTGTGTCCTCTGATCTGTCGCTGTATCCAGTCGTCTCCCTCCCCATCA
TCGCCAGGTCCAGCCTCGTTCGGCAACCGCGAGTAGTCCACTTTCTCCGC
AGTGCCATTTGGACCCCCGTAGTTTCTACTGCCCCCTCCGGCGCCCCTGC
CAATGGGAGCCTTCCAGTCGTTCATTGCGGCACCAGTGAGAGTCACCGAC
CCCCGCGTTCACCCTCTCGCTCCTCCTCTCTGTCCCCCGCAACGACCACG
CGCCCGTACTGCTGTGTGCGAGCCGAGGGCCGAGAGGCACCCATAACAAG
GGGCGACGCACATATCGCAAGAACAAGTACTAGGGTTACGCCCCAAATGG
CGCGTAGCCCCCGCCCCATCAACCAAGGTGGGTCACAGCAGTGGAGGTTG
GCGAACCACCGCCTACCGCTGCTGGCTGAAGTCACCAGAATCAAGCCGTG
TGGTGTGTCTCCAAGCTCTCGGTCATGGCAGAGCTAGGTGGTAAACGCAA
CCGATTCCTCATGAAGAACCCAGAGAACGGAGATCTTAACCAGTACTGGT
ACTCGAAGGCGACAATTGACGCTATTGTAGACGTTGACAGGTGTATTAGC
CAGATTGTTGTTCCTTGCCGTCGCCGCCGACCCGTACCCGCAGCGGAAGT
GGGGGAGTTTGGATCTGGCGGTACCGCGTTTCTGTCCACCCCGAGCATAT
ACTTCTCCTTGGACAGGGATCTCAGGGCGAAATGCAAGGTTTTCGACCTT
GACACCAAGTGGGCGAAAGACCCCGGTTTCGTGCTATATGACTATACCAA
GCCTCAAGACATCCCGGAAACGTTACGGGGTACATTCGACATGGTCGTTG
TCGACCCTCCGTTCGTCACCAGACAGGTGTGGGAGAGCTACACGGCCGCG
ACGAAACTGCTACTGCGGCCGGGGGGTGCCAGGCTCGTCTTGTGTAGCAC
GATATTGGAGAACGCACCGTTCATGGAGGAACTGCTTGGAGCAAGCCCGT
GCGAGTTCAAGCCGTCCATACCGAACCTTGTGTACCAGTATTCGCTTTAC
GTCAACTACGACTCCAAGAGGCTTGCATCATGCAACCCGGAGATACCATC
AGAGGCGTGATGATGGGTGCCAACAAAAATTTGCGCGGAGAACTGGCTTC
TTTAGTACCACCAATCACCTGTACCGGCAGTGTGCTCTTGCAGACGAATT
TTTATGTTGTTCGTTTTGTGCTGCAGTGGTGCACATAATTCCGAAGATCG
ATCATTTCCATGAAAAAGGCGAAATGTTTGTGGTGCTATTAGTTCTGTAG
GCTGCGATTTTTGTTGGTTATATTGAAATTCTGTACAGGTTTGGTGTTTT
CGCGCGGATTCACGCACACATCGGGATCGACATGCATAGGAATGCACATA
CGACAGGCATGGCGACCTGGAGTAGGGGTTTACATCGCTTTTACGGTGTG
TTCCACACGGTTGGGTAACTCGATTCTACCAAGAGAGGAGGGAAGACACC
TACACAACGAACGCTAACGTCGTTTGAGAGAGGAGGGAAGATATTTGCAC
AACAAAAGCTTGTGTTATTTGAGAGATGGTGGGAGAGCAACGCTTTTATT
GATAGCGCAATCTACGCGGTCAGAACCCGGGTTTTAGTATGGTACCCGGA
CTAGTGTGGGCAACGGGGCCCACCCACGAAAACTACCGCCACGAATCTCT
TCAGCCACGCCACCGCTGCAAGCTTTTCCTTGTCGTGCGGAAGGGATGGC
GTGTGGTGCCTTGCCTGTTCGGCGCCGGACTTGTAGAATACCCAGGTTCA
TCGGAGAGAGCTCAAGATAGCCCGGTCGTTTCTGTGTTATCGTACGAGGT
CGTACGCAACTCAGCCGTATGTGTTCCAGCTAGGTACCCGCAACGCCCTT
CACGAGGCGGAGGAATTTGCGGATCCACCACCGATCCGATTCGTACAGGA
TCACAGCAGAAAAAGGGAGGCAAACAGTATTCCGTTCGGCACATATCCTG
ACCAATCTCCGTTCGAGACACTCTGCTATACGGGTGGTAGCTTTGTCAGG
TGCTACGGAAAGGCAATCACGCGTTTACAAACGACAAAATTATGGATTGA
TACATGCATCCCAAGCTGGGGCATTTTCGCGCCTATACCACAAGCCACGC
AGCAGATAGTGCTATCTAGACCATGGCGGGCTTCGTCAAAACTGGAACGT
CAAACCGAGGGCGCATGCCCGACAGCACCATCTGCCACCACCACTCTACA
AGAAATTCCTTCGTCCGCAACCGTGCAAGTTTACAGAGTCCCCCCCAAAT
ATGTACATCAACTCCCGCCACATATAGAAAACGCTGTCGGTGCAACGGAA
CCCCAGACCCTGCATCATTTTTTACCCACAACACCGGGTGGGTCCTCCCG
CAGCCAATGCCACTGCAACACGGAACCTGATATCGCACAAAGGTCGTGTT
TGACCCGTGCCGCCCCCCCCCTCTCGCAGCGCTTCCTGAAAATTCCAGGG
ATTCTTGGGGGCAGTTCTAGACATGTTTGCCGCACCCGCCGGCTCCTTGT
TTGCCTTTGCGCGATTGCTGATGTCATCACCCGCGCCAGGTTTTGCCCCC
ATCAACTTCACACGACCAAATCCGAGTCCGTCGGTGGGGTCGCCGGTAAT
GGCAACGCGTCGTACGTT
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protein sequence of Ec-27_006310.2

>Ec-27_006310.2 ID=Ec-27_006310.2|Name=Ec-27_006310.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=212bp
MAELGGKRNRFLMKNPENGDLNQYWYSKATIDAIVDVDRCISQIVVPCRR
RRPVPAAEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDP
GFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPG
GARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRL
ASCNPEIPSEA*
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mRNA from alignment at chr_27:5831999..5836343+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006310.2 ID=Ec-27_006310.2|Name=Ec-27_006310.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4345bp|location=Sequence derived from alignment at chr_27:5831999..5836343+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCTTGTGTCCTCTGATCTGTCGCTGTATCCAGTCGTCTCCCTCCCCATCA
TCGCCAGGTCCAGCCTCGTTCGGCAACCGCGAGTAGTCCACTTTCTCCGC
AGTGCCATTTGGACCCCCGTAGTTTCTACTGCCCCCTCCGGCGCCCCTGC
CAATGGGAGCCTTCCAGTCGTTCATTGCGGCACCAGTGAGAGTCACCGAC
CCCCGCGTTCACCCTCTCGCTCCTCCTCTCTGTCCCCCGCAACGACCACG
CGCCCGTACTGCTGTGTGCGAGCCGAGGGCCGAGAGGCACCCATAACAAG
GGGCGACGCACATATCGCAAGAACAAGTACTAGGGTTACGCCCCAAATGG
CGCGTAGCCCCCGCCCCATCAACCAAGGTGGGTCACAGCAGTGGAGGTTG
GCGAACCACCGCCTACCGCTGCTGGCTGAAGTCACCAGAATCAAGCCGTG
TGGTGTGTCTCCAAGCTCTCGGTCATGGCAGAGCTAGGTGGTAAACGCAA
CCGATTCCTCATGAAGAACCCAGAGGTGAGCGAAAACGGGAATTTTGCGA
TTGATCTCAAAACGGTCCGAACACCAGCATCGAAGATACTTCAGATACCA
AGATACGGGTGCTCTCACGTAAAATAGGAGGGAGTAAACATGATCGAACG
CGCGGCGGGAGGGCACTATGCATGAGCTAATAATCTCGAAAGAGGTAACC
TTATAACATCGTGGAAATTTGTGGACGGAGAGCCTCGTTGCTACAACTGC
CACGCACAGAACCAACCATCGTAGTTGCCCCGCATCTTCGCTCCGTCGAC
CGATTGACGACTGAAATTCTACACATGTTCCCGCAGATATCACGCCCTAA
AGCAGCACCCGCCCCCCCCCTGCGCGCATGGCCACCATGTTTACAGAACG
GAGATCTTAACCAGTACTGGTACTCGAAGGCGACAATTGACGCTATTGTA
GGTGAGGATTTGAACAGGTTCCATCATTTCAGACATGACTCGCCCACCTA
CTTTATTTAGTTGTAGGATTTCGCATGTGTGGGAATGGTATAGCTTGGCT
GGGTTGATGTAAAATTTCGTAACAGAGAATAGCTTGCCCGATATGCGTGG
AGACACGATGCGATTCGACAGAAACGTGAAACATTGGGTCGTGAGCGGAA
GCGGAGCGTATCGGTGGTACCACTGTACATACACACGATTGGATACAATG
TCGGCGCAATTACATCTTTGCAGACTATTCCTCAAAAAAGTTCACGAAAG
GATTGTATGTGGGACTATAGTCTAGATATCCATTAACGCCGCCATTTGTG
CAACAGACGTTGACAGGTGTATTAGCCAGATTGTTGTTCCTTGCCGTCGC
CGCCGACCCGTACCCGCAGCGGAAGTGGGGGAGTTTGGATCTGGCGGTAC
CGCGTTTCTGTCCACCCCGAGCATATACTTCTCCTTGGACAGGGATCTCA
GGGCGAAATGCAAGGTTTTCGACGTGAGTTATTACGCACCGTGGTATGTT
CAGGGGTGTCTTTTCGGCGCTACGCGTAGCGGTTGCGACTGGAATGGACA
CGGGCCGCCTCGTATCCTCACAACCTAGGGACGGTACTGCCCTTGAGATA
CACTTTCGGGCAATATGCAACCCCCTCCGTACCGGAGTATTCAAGTTCGC
CACTTCATTACTCTACTTGTCGAGAATCCCAGGGAGAGTTCCATGAAGAA
ACTGAAGATCGATAGCTGCGTTCTTGTTCTCATGCCGCGACAACCCCACC
ACGGTATGCGCTTTTGCGTTGTCCAGCTTGACACCAAGTGGGCGAAAGAC
CCCGGTTTCGTGCTATATGACTATACCAAGCCTCAAGACATCCCGGAAAC
GTTACGGGGTACATTCGACATGGTCGTTGTCGACCCTCCGTTCGTCACCA
GACAGGTGAGGCTCGTTCTCCGTATACGTAACCCAGTTAAGGTCTAGGAT
AAAAAGGTAGAATAGCGAGGGCACATGGCAGAAACATCGAAAGCTCAATC
GAGGAGAGCTGTCCGCCGTTGTGTTATTTTGTTGTTGTTATGGAAAGGTG
CTACAAAAGGGCAAATTATAGGAACAAGCCGTCTAAAATGCGGGACATCG
ATCGACGTTGCCTCACTACGGTATCCCCTGCGAGAGCCTTCCACGAAACA
ATGACCAATCAACATGCGCGGGATGTCCAAACTGCGTCCAATTATGCACC
GCTCTCTAGCCGCTGTTTACTTGAGGGTCCACTAACGGTATTTTGTACTT
CGAAGTACGAGCTTCTATGCATTGCGCCTTGCATTTATGGTTAATGTGGT
AGGTGCAGTTGACTCCCTACGACCCTGTGCTCCAGATCCCATTCTCACTG
AGATTCTTCGAGCATGGTGAGGTACATTTCTGACCCCTGCACATAATGTA
TGCACTCGATAGTCAGTCGTTTGAACTCACGTTTCGCGCCACACGAGCAT
TGGCTTACAGGCATTCGCTCTATCCTATCAGAACGTCATCCGACAATATT
CATGCAACCCACGTTGTTTGCAATCGCGCCCATACTGCTTCCCACTGAGC
TAGGTGTGGGAGAGCTACACGGCCGCGACGAAACTGCTACTGCGGCCGGG
GGGTGCCAGGCTCGTCTTGTGTAGCACGATATTGGAGAACGCACCGTTCA
TGGAGGAACTGCTTGGAGCAAGCCCGTGCGAGTTCAAGCCGTCCATACCG
AACCTTGTGTACCAGTATTCGCTTTACGTCAACTACGACTCCAAGAGGCT
TGCATCATGCAACCCGGAGATACCATCAGAGGCGTGATGATGGGTGCCAA
CAAAAATTTGCGCGGAGAACTGGCTTCTTTAGTACCACCAATCACCTGTA
CCGGCAGTGTGCTCTTGCAGACGAATTTTTATGTTGTTCGTTTTGTGCTG
CAGTGGTGCACATAATTCCGAAGATCGATCATTTCCATGAAAAAGGCGAA
ATGTTTGTGGTGCTATTAGTTCTGTAGGCTGCGATTTTTGTTGGTTATAT
TGAAATTCTGTACAGGTTTGGTGTTTTCGCGCGGATTCACGCACACATCG
GGATCGACATGCATAGGAATGCACATACGACAGGCATGGCGACCTGGAGT
AGGGGTTTACATCGCTTTTACGGTGTGTTCCACACGGTTGGGTAACTCGA
TTCTACCAAGAGAGGAGGGAAGACACCTACACAACGAACGCTAACGTCGT
TTGAGAGAGGAGGGAAGATATTTGCACAACAAAAGCTTGTGTTATTTGAG
AGATGGTGGGAGAGCAACGCTTTTATTGATAGCGCAATCTACGCGGTCAG
AACCCGGGTTTTAGTATGGTACCCGGACTAGTGTGGGCAACGGGGCCCAC
CCACGAAAACTACCGCCACGAATCTCTTCAGCCACGCCACCGCTGCAAGC
TTTTCCTTGTCGTGCGGAAGGGATGGCGTGTGGTGCCTTGCCTGTTCGGC
GCCGGACTTGTAGAATACCCAGGTTCATCGGAGAGAGCTCAAGATAGCCC
GGTCGTTTCTGTGTTATCGTACGAGGTCGTACGCAACTCAGCCGTATGTG
TTCCAGCTAGGTACCCGCAACGCCCTTCACGAGGCGGAGGAATTTGCGGA
TCCACCACCGATCCGATTCGTACAGGATCACAGCAGAAAAAGGGAGGCAA
ACAGTATTCCGTTCGGCACATATCCTGACCAATCTCCGTTCGAGACACTC
TGCTATACGGGTGGTAGCTTTGTCAGGTGCTACGGAAAGGCAATCACGCG
TTTACAAACGACAAAATTATGGATTGATACATGCATCCCAAGCTGGGGCA
TTTTCGCGCCTATACCACAAGCCACGCAGCAGATAGTGCTATCTAGACCA
TGGCGGGCTTCGTCAAAACTGGAACGTCAAACCGAGGGCGCATGCCCGAC
AGCACCATCTGCCACCACCACTCTACAAGAAATTCCTTCGTCCGCAACCG
TGCAAGTTTACAGAGTCCCCCCCAAATATGTACATCAACTCCCGCCACAT
ATAGAAAACGCTGTCGGTGCAACGGAACCCCAGACCCTGCATCATTTTTT
ACCCACAACACCGGGTGGGTCCTCCCGCAGCCAATGCCACTGCAACACGG
AACCTGATATCGCACAAAGGTCGTGTTTGACCCGTGCCGCCCCCCCCCTC
TCGCAGCGCTTCCTGAAAATTCCAGGGATTCTTGGGGGCAGTTCTAGACA
TGTTTGCCGCACCCGCCGGCTCCTTGTTTGCCTTTGCGCGATTGCTGATG
TCATCACCCGCGCCAGGTTTTGCCCCCATCAACTTCACACGACCAAATCC
GAGTCCGTCGGTGGGGTCGCCGGTAATGGCAACGCGTCGTACGTT
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Coding sequence (CDS) from alignment at chr_27:5831999..5836343+

>Ec-27_006310.2 ID=Ec-27_006310.2|Name=Ec-27_006310.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=636bp|location=Sequence derived from alignment at chr_27:5831999..5836343+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCAGAGCTAGGTGGTAAACGCAACCGATTCCTCATGAAGAACCCAGA
GAACGGAGATCTTAACCAGTACTGGTACTCGAAGGCGACAATTGACGCTA
TTGTAGACGTTGACAGGTGTATTAGCCAGATTGTTGTTCCTTGCCGTCGC
CGCCGACCCGTACCCGCAGCGGAAGTGGGGGAGTTTGGATCTGGCGGTAC
CGCGTTTCTGTCCACCCCGAGCATATACTTCTCCTTGGACAGGGATCTCA
GGGCGAAATGCAAGGTTTTCGACCTTGACACCAAGTGGGCGAAAGACCCC
GGTTTCGTGCTATATGACTATACCAAGCCTCAAGACATCCCGGAAACGTT
ACGGGGTACATTCGACATGGTCGTTGTCGACCCTCCGTTCGTCACCAGAC
AGGTGTGGGAGAGCTACACGGCCGCGACGAAACTGCTACTGCGGCCGGGG
GGTGCCAGGCTCGTCTTGTGTAGCACGATATTGGAGAACGCACCGTTCAT
GGAGGAACTGCTTGGAGCAAGCCCGTGCGAGTTCAAGCCGTCCATACCGA
ACCTTGTGTACCAGTATTCGCTTTACGTCAACTACGACTCCAAGAGGCTT
GCATCATGCAACCCGGAGATACCATCAGAGGCGTGA
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Synonyms
The feature 'Ec-27_006310.2' has the following synonyms
Synonym
Esi0000_0039
Esi_0000_0039
Adenine-specific