Ec-27_006260.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006260.1
Unique NameEc-27_006260.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length54
Homology
The following BLAST results are available for this feature:
BLAST of Ec-27_006260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5792477..5792638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length162
Hectar predicted targeting categorysignal peptide
Gene idEc-27_006260.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006260Ec-27_006260Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5792477..5792638 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006260.1.1Ec-27_006260.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5792477..5792638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006260.1CDS:Ec-27_006260.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5792477..5792638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006260.1Ec-27_006260.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5792477..5792638 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006260.1 ID=Ec-27_006260.1|Name=Ec-27_006260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=54bp
MCVCVYAPFLLVGPCLFLGIRARNDGGWRAHEVGGLEHFETRYIKKREGS
SIF*
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spliced messenger RNA

>Ec-27_006260.1 ID=Ec-27_006260.1|Name=Ec-27_006260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=162bp|location=Sequence derived from alignment at chr_27:5792477..5792638+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTGTGTGTGTGTATGCACCGTTTCTCCTCGTTGGTCCTTGTCTCTT
CCTCGGGATTCGGGCGCGAAATGACGGGGGATGGCGTGCGCATGAAGTTG
GAGGCTTGGAACATTTTGAGACACGTTATATAAAGAAAAGAGAAGGTAGC
AGTATTTTTTGA
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protein sequence of Ec-27_006260.1

>Ec-27_006260.1 ID=Ec-27_006260.1|Name=Ec-27_006260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=54bp
MCVCVYAPFLLVGPCLFLGIRARNDGGWRAHEVGGLEHFETRYIKKREGS
SIF*
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mRNA from alignment at chr_27:5792477..5792638+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006260.1 ID=Ec-27_006260.1|Name=Ec-27_006260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=162bp|location=Sequence derived from alignment at chr_27:5792477..5792638+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGTGTGTGTGTGTATGCACCGTTTCTCCTCGTTGGTCCTTGTCTCTT
CCTCGGGATTCGGGCGCGAAATGACGGGGGATGGCGTGCGCATGAAGTTG
GAGGCTTGGAACATTTTGAGACACGTTATATAAAGAAAAGAGAAGGTAGC
AGTATTTTTTGA
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Coding sequence (CDS) from alignment at chr_27:5792477..5792638+

>Ec-27_006260.1 ID=Ec-27_006260.1|Name=Ec-27_006260.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=162bp|location=Sequence derived from alignment at chr_27:5792477..5792638+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTGTGTGTGTGTGTATGCACCGTTTCTCCTCGTTGGTCCTTGTCTCTT
CCTCGGGATTCGGGCGCGAAATGACGGGGGATGGCGTGCGCATGAAGTTG
GAGGCTTGGAACATTTTGAGACACGTTATATAAAGAAAAGAGAAGGTAGC
AGTATTTTTTGA
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Synonyms
The feature 'Ec-27_006260.1' has the following synonyms
Synonym
Esi0000_0051
Esi_0000_0051