Ec-27_006220.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-27_006220.1
Unique Name	Ec-27_006220.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	801

Homology

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BLAST of Ec-27_006220.1 vs. uniprot
Match: D8LAW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW1_ECTSI)

HSP 1 Score: 709 bits (1830), Expect = 2.250e-244
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 3

Query: 1485 MSSLDRFPRGRLFSEEEIREREATPGPEAYDVGLENRLEGCSFEKMYGSLETLASWGSLGASRAGGGVCSNDKVAADGIVHESENTNKGTNISKSGNGGVEEEGYAKDRQSVAELAERNSSRRSHAPCVAGQSTLSSPAKLETNSARRSSNGRRQHCSRLSPASSVAACRGVPCPDCASVEVATAAGTFAAASASLSDANLFRRARTIGASVRFGDMPRLRSAPAFTIGRGQRDVSSRLLHTTPAEALYKEDRLGRSGKGPTTASPRAGERLTRPRPIAARVVLPKQGPRASAGGGSEXXXXXXXXXXXXXMEVAERGVIVVDGALGTQVKSRRPTSPSFTLAGPRRAATLFHERLRYDGKALSVRQQDQAQPKIFFNAHVPPINAEDE 2651
            MSSLDRFPRGRLFSEEEIREREATPGPEAYDVGLENRLEGCSFEKMYGSLETLASWGSLGASRAGGGVCSNDKVAADGIVHESENTNKGTNISKSGNGGVEEEGYAKDRQSVAELAERNSSRRSHAPCVAGQSTLSSPAKLETNSARRSSNGRRQHCSRLSPASSVAACRGVPCPDCASVEVATAAGTFAAASASLSDANLFRRARTIGASVRFGDMPRLRSAPAFTIGRGQRDVSSRLLHTTPAEALYKEDRLGRSGKGPTTASPRAGERLTRPRPIAARVVLPKQGPRASAGGGSEXXXXXXXXXXXXXMEVAERGVIVVDGALGTQVKSRRPTSPSFTLAGPRRAATLFHERLRYDGKALSVRQQDQAQPKIFFNAHVPPINAEDE
Sbjct:    1 MSSLDRFPRGRLFSEEEIREREATPGPEAYDVGLENRLEGCSFEKMYGSLETLASWGSLGASRAGGGVCSNDKVAADGIVHESENTNKGTNISKSGNGGVEEEGYAKDRQSVAELAERNSSRRSHAPCVAGQSTLSSPAKLETNSARRSSNGRRQHCSRLSPASSVAACRGVPCPDCASVEVATAAGTFAAASASLSDANLFRRARTIGASVRFGDMPRLRSAPAFTIGRGQRDVSSRLLHTTPAEALYKEDRLGRSGKGPTTASPRAGERLTRPRPIAARVVLPKQGPRASAGGGSEXXXXXXXXXXXXXMEVAERGVIVVDGALGTQVKSRRPTSPSFTLAGPRRAATLFHERLRYDGKALSVRQQDQAQPKIFFNAHVPPINAEDE 389

The following BLAST results are available for this feature:

BLAST of Ec-27_006220.1 vs. uniprot

BLAST of Ec-27_006220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LAW1_ECTSI	2.250e-244	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:5766229..5770967 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	3688
Hectar predicted targeting category	other localisation
Gene id	Ec-27_006220.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-27_006220	Ec-27_006220	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_27 5766229..5770967 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_006220.1	Ec-27_006220.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_27 5766481..5769934 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_006220.1.1	Ec-27_006220.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 5766229..5767197 +
Ec-27_006220.1.2	Ec-27_006220.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 5767636..5769234 +
Ec-27_006220.1.3	Ec-27_006220.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 5769848..5770967 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_006220	5UTR:Ec-27_006220.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_27 5766229..5766480 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_006220.1	CDS:Ec-27_006220.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_27 5766481..5767197 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_006220	3UTR:Ec-27_006220.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_27 5769935..5770967 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_27:5766229..5770967+
coding sequence from alignment at chr_27:5766229..5770967+

mRNA sequence

>Ec-27_006220.1 ID=Ec-27_006220.1|Name=Ec-27_006220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=801bp
MPHSSSEETQDIPEQQPNGCTEAHKNHAVTLPAKVPGPGPGDYNVTPPTI
GQNGHAVRFGYPGLGRKYPPRTPDQPRAEIPCTYAEPAHVSSLNNQLTSD
RPTSYAVFFGAAPRFQGKCSVSNQAKDVLHVAHAKPMGRRSPTVAAASGS
TTTTTSPSGPGPGDYDVAHHAVGQNGPAITFGDPALGGKRYPPRTPDQPR
AEVPCTYAEPGHISCLRHQLTSDRPTSPAVFFGGAPRFQERRKTWEARID
AATQRKPAGQTRAKSSSALRPGNTLPQPISTTDSRRRKKRRKRRWGGPRI
FRRGNYGWLTSCAEPRQWEPQLKLLEDKGKGSESHPATPISDVSRTWSLT
EKNAPRPVLRRGERHNQSEYNPQHRDLPREKDGYPGPKYDRPPGAFGRTG
GGGGTVAPSAFMSSLDRFPRGRLFSEEEIREREATPGPEAYDVGLENRLE
GCSFEKMYGSLETLASWGSLGASRAGGGVCSNDKVAADGIVHESENTNKG
TNISKSGNGGVEEEGYAKDRQSVAELAERNSSRRSHAPCVAGQSTLSSPA
KLETNSARRSSNGRRQHCSRLSPASSVAACRGVPCPDCASVEVATAAGTF
AAASASLSDANLFRRARTIGASVRFGDMPRLRSAPAFTIGRGQRDVSSRL
LHTTPAEALYKEDRLGRSGKGPTTASPRAGERLTRPRPIAARVVLPKQGP
RASAGGGSEGGKSSAAAGGEGGMEVAERGVIVVDGALGTQVKSRRPTSPS
FTLAGPRRAATLFHERLRYDGKALSVRQQDQAQPKIFFNAHVPPINAEDE
*

spliced messenger RNA

>Ec-27_006220.1 ID=Ec-27_006220.1|Name=Ec-27_006220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3688bp|location=Sequence derived from alignment at chr_27:5766229..5770967+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CATGTGAGCGTATTAGATTATATGCATATGAGCATATGTGTATGAGGCGT
ACTCTCTCTCTCCCTCTCCATCTCCCTCTCCCTCTCCCTCTCCACCTTCG
TCGCTGAAAAGCAGTAAGTACCATGGACAGATGAAGGAGGCAAGTTGGGA
ACTACAATACAGCAATACGCGGCGAGCGTTTGGTTCATCGGCGCGAATAT
AGTAGACCACGAGCAACAGCGACCGACCTGGGCGTAATAACACGCTGTGC
GAATGCCTCATTCTTCTTCCGAAGAAACACAGGACATCCCTGAACAACAG
CCAAACGGCTGCACGGAGGCACATAAAAATCATGCCGTCACACTGCCGGC
GAAGGTCCCGGGGCCCGGGCCTGGGGACTACAATGTCACGCCTCCTACAA
TTGGGCAGAACGGCCACGCGGTTAGGTTCGGTTACCCCGGACTAGGGAGA
AAGTACCCGCCGAGAACCCCGGATCAACCGCGAGCAGAGATCCCGTGCAC
CTACGCCGAGCCCGCGCACGTTTCTAGCCTCAACAATCAGTTGACCTCTG
ATCGGCCCACGTCTTACGCGGTTTTCTTCGGTGCGGCACCTCGTTTCCAG
GGGAAGTGTTCAGTTTCAAATCAAGCCAAAGATGTGCTTCACGTTGCTCA
CGCCAAGCCAATGGGACGACGAAGCCCAACGGTGGCCGCCGCCAGCGGTT
CTACTACAACAACTACAAGTCCGAGCGGACCTGGTCCCGGGGACTACGAT
GTCGCACATCATGCAGTCGGGCAGAACGGCCCCGCGATCACGTTCGGCGA
CCCCGCCCTGGGGGGGAAAAGGTACCCGCCGAGGACCCCGGACCAACCGC
GAGCCGAAGTCCCGTGCACCTACGCCGAGCCTGGGCATATCTCTTGCCTG
CGCCACCAATTGACCTCGGATCGACCCACGTCTCCCGCGGTCTTCTTTGG
CGGAGCACCTCGTTTCCAGGAACGTCGGAAGACGTGGGAGGCGAGGATTG
ATGCTGCCACACAGCGAAAGCCAGCAGGCCAGACGAGGGCTAAATCGTCT
TCTGCTCTGCGCCCGGGCAACACTCTTCCTCAACCCATCTCCACCACCGA
TTCGCGTCGCCGAAAGAAGCGAAGAAAGCGGCGGTGGGGAGGCCCGAGAA
TATTTCGTCGTGGAAACTACGGCTGGCTGACGTCGTGCGCGGAGCCGAGA
CAGTGGGAACCGCAACTCAAACTTCTCGAAGACAAAGGCAAGGGTAGCGA
AAGCCACCCGGCAACACCCATCTCAGACGTCTCGAGAACATGGTCGCTGA
CGGAAAAGAACGCCCCACGCCCAGTGCTGAGGCGCGGCGAGCGCCACAAT
CAGTCGGAGTACAACCCGCAGCACCGCGATCTGCCGCGAGAGAAGGACGG
GTACCCCGGTCCGAAGTACGACCGACCCCCCGGAGCGTTTGGAAGAACGG
GCGGCGGTGGCGGAACGGTCGCCCCGAGCGCCTTTATGTCTTCGCTGGAT
CGCTTCCCCCGTGGCCGGCTGTTTTCTGAGGAGGAAATACGAGAAAGGGA
AGCCACTCCAGGCCCAGAAGCGTACGACGTTGGGCTGGAAAACCGCTTGG
AAGGGTGTTCTTTTGAAAAGATGTACGGGTCATTGGAGACGCTCGCGTCT
TGGGGTAGTCTGGGGGCTAGCAGAGCAGGGGGGGGGGTATGCAGTAACGA
CAAGGTTGCTGCGGACGGTATAGTACACGAGAGCGAGAATACTAACAAGG
GAACGAACATTAGTAAGAGTGGGAACGGGGGAGTGGAGGAGGAAGGATAC
GCCAAAGACCGGCAATCAGTAGCGGAGCTGGCCGAACGAAATTCTTCCCG
TCGTTCTCACGCACCCTGTGTGGCTGGGCAGTCGACGTTGTCCTCGCCAG
CGAAACTGGAGACCAACAGCGCTCGCCGCAGTAGCAACGGGCGGCGGCAG
CACTGTTCTCGACTATCACCGGCATCGTCGGTGGCGGCTTGTCGCGGCGT
GCCGTGTCCGGACTGTGCGAGCGTCGAGGTAGCCACCGCCGCGGGCACCT
TCGCCGCCGCGTCCGCCTCCCTGTCAGACGCGAACCTGTTCCGACGGGCG
AGGACGATCGGCGCAAGCGTCCGCTTCGGCGACATGCCCCGCCTCCGCAG
CGCCCCGGCCTTCACGATCGGCAGGGGCCAGAGGGACGTCTCTTCGCGGC
TCCTCCATACCACGCCAGCGGAAGCACTCTACAAGGAGGACCGTCTTGGG
CGGAGCGGGAAGGGGCCAACGACGGCCTCTCCCCGGGCGGGAGAACGACT
CACCAGACCCCGGCCGATTGCGGCGAGAGTCGTCCTCCCGAAACAGGGTC
CACGCGCTTCCGCGGGGGGGGGCTCGGAGGGAGGAAAATCGTCGGCGGCG
GCGGGGGGAGAAGGAGGGATGGAGGTTGCCGAGAGAGGGGTGATCGTGGT
TGATGGGGCTCTTGGAACGCAGGTAAAATCCCGCCGACCCACCAGCCCTA
GCTTTACCCTAGCGGGGCCGCGGCGTGCGGCAACCCTGTTCCACGAGCGG
CTTCGGTACGATGGAAAGGCGCTGTCTGTGAGGCAACAAGATCAAGCGCA
GCCAAAGATCTTCTTCAATGCCCACGTTCCACCAATCAATGCAGAAGACG
AGTGACGGGGAACGTTTTTCTTGGAGAGAGCCGGCTTCCTTCAGTCCCTA
CGAAAATGAGGTGGCTTGCTTCCCAGCATTGCGTCTTCTTACGAAAGCCC
GCGAGCGATAGGCAGAGTCATGATGGTTCAATCCATAGTAGGGTAGCAGA
GTAACCCTTCTGTGTGACCAGGGATTCTAGCTCCTACACGGCAGAAATGC
TGTGTGTGTGAGCCTTAGGTATAATTGATGAAAATAAAAGAGAGAAACGA
AAGAGGTCTCCTTGTCCAGGTGTAATCTGTGAACACCGAACCAGAGAACC
GATTTGCTTGTGTTTTTCAGACTTTCCAGACGGAGGCAGCCTCCTCCTCA
GCGTAGGTGCGTCCTCGAAGAAAGAGGTACAATACGGGGTGTGTTATTGT
TTTTATTGTCTGCTTTGCAACAGCAGTCTCTCTCCCTTTTGGTCTTCTTG
GTCCACCACCATGCGCAGCAATGCCACCGTCTTTGTTGCGTCTGAGTTTG
TACAGAATGTTGGAAACGGGACATGTCGAGTCGTGAAGTATGGCACCGAG
AGGTCGATAGTGTCAATCCGAGATGTCACCGCCGCTACCTTTTCGAACAC
GATGTTTGTTCTGCTGTGTGTACTCCTCTCCTACAAACGTCCAATTACCA
AGCACCATCCCAACCTTGGCCATGCTACTGCAGCAAGCCAAACACAAACG
AATGGTTCGCCATTTCTATTTTCCCGAAAACATCGTATGTATCACACCGT
CCACTCTTACCCTGACTCTGGAACGCAACTCTAACAAAACAGAATACTAT
TTTTTTCACTGCGAGCTCTGCTTCAATCTTATCCCCGAGGTAATGCTCCA
TGCGGTAGCAGAGGGTCCGGGCGTGTTCGGCCTGTCGCAGTTCTTCATGT
AGCACAGCCCAAAGTTTTTGTCAAAAGAAAAGGCTTGGCAACCAGCCCTT
CCGCCACACGCGGCGCAGCAGTCACCGAGAGAACCAGCCCTGACGGGTGA
TTTTCGAAGAGTCGTCCCGACCGACCGTTGGGGGTAAG

protein sequence of Ec-27_006220.1

>Ec-27_006220.1 ID=Ec-27_006220.1|Name=Ec-27_006220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=801bp
MPHSSSEETQDIPEQQPNGCTEAHKNHAVTLPAKVPGPGPGDYNVTPPTI
GQNGHAVRFGYPGLGRKYPPRTPDQPRAEIPCTYAEPAHVSSLNNQLTSD
RPTSYAVFFGAAPRFQGKCSVSNQAKDVLHVAHAKPMGRRSPTVAAASGS
TTTTTSPSGPGPGDYDVAHHAVGQNGPAITFGDPALGGKRYPPRTPDQPR
AEVPCTYAEPGHISCLRHQLTSDRPTSPAVFFGGAPRFQERRKTWEARID
AATQRKPAGQTRAKSSSALRPGNTLPQPISTTDSRRRKKRRKRRWGGPRI
FRRGNYGWLTSCAEPRQWEPQLKLLEDKGKGSESHPATPISDVSRTWSLT
EKNAPRPVLRRGERHNQSEYNPQHRDLPREKDGYPGPKYDRPPGAFGRTG
GGGGTVAPSAFMSSLDRFPRGRLFSEEEIREREATPGPEAYDVGLENRLE
GCSFEKMYGSLETLASWGSLGASRAGGGVCSNDKVAADGIVHESENTNKG
TNISKSGNGGVEEEGYAKDRQSVAELAERNSSRRSHAPCVAGQSTLSSPA
KLETNSARRSSNGRRQHCSRLSPASSVAACRGVPCPDCASVEVATAAGTF
AAASASLSDANLFRRARTIGASVRFGDMPRLRSAPAFTIGRGQRDVSSRL
LHTTPAEALYKEDRLGRSGKGPTTASPRAGERLTRPRPIAARVVLPKQGP
RASAGGGSEGGKSSAAAGGEGGMEVAERGVIVVDGALGTQVKSRRPTSPS
FTLAGPRRAATLFHERLRYDGKALSVRQQDQAQPKIFFNAHVPPINAEDE
*

mRNA from alignment at chr_27:5766229..5770967+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-27_006220.1 ID=Ec-27_006220.1|Name=Ec-27_006220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4739bp|location=Sequence derived from alignment at chr_27:5766229..5770967+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CATGTGAGCGTATTAGATTATATGCATATGAGCATATGTGTATGAGGCGT
ACTCTCTCTCTCCCTCTCCATCTCCCTCTCCCTCTCCCTCTCCACCTTCG
TCGCTGAAAAGCAGTAAGTACCATGGACAGATGAAGGAGGCAAGTTGGGA
ACTACAATACAGCAATACGCGGCGAGCGTTTGGTTCATCGGCGCGAATAT
AGTAGACCACGAGCAACAGCGACCGACCTGGGCGTAATAACACGCTGTGC
GAATGCCTCATTCTTCTTCCGAAGAAACACAGGACATCCCTGAACAACAG
CCAAACGGCTGCACGGAGGCACATAAAAATCATGCCGTCACACTGCCGGC
GAAGGTCCCGGGGCCCGGGCCTGGGGACTACAATGTCACGCCTCCTACAA
TTGGGCAGAACGGCCACGCGGTTAGGTTCGGTTACCCCGGACTAGGGAGA
AAGTACCCGCCGAGAACCCCGGATCAACCGCGAGCAGAGATCCCGTGCAC
CTACGCCGAGCCCGCGCACGTTTCTAGCCTCAACAATCAGTTGACCTCTG
ATCGGCCCACGTCTTACGCGGTTTTCTTCGGTGCGGCACCTCGTTTCCAG
GGGAAGTGTTCAGTTTCAAATCAAGCCAAAGATGTGCTTCACGTTGCTCA
CGCCAAGCCAATGGGACGACGAAGCCCAACGGTGGCCGCCGCCAGCGGTT
CTACTACAACAACTACAAGTCCGAGCGGACCTGGTCCCGGGGACTACGAT
GTCGCACATCATGCAGTCGGGCAGAACGGCCCCGCGATCACGTTCGGCGA
CCCCGCCCTGGGGGGGAAAAGGTACCCGCCGAGGACCCCGGACCAACCGC
GAGCCGAAGTCCCGTGCACCTACGCCGAGCCTGGGCATATCTCTTGCCTG
CGCCACCAATTGACCTCGGATCGACCCACGTCTCCCGCGGTCTTCTTTGG
CGGAGCACCTCGTTTCCAGGTGCGGTGCGGTGATGACCTTTCGAAAATCT
CGCCAGAAATTTGAACAGCTGGGCTTGAGCGAATGAGGCGGTGCGCCCAA
AAGTCAGACGTCCATATGACCTACAGACAGTAAGAAACGCGGACAACGAA
CTTTGTCTAGCTTGCAAACGGTGCTCGTTGAAGGGTTGAAGTTGCCCAGA
ACCGCCGGCACTCGCCCATCACAAACGTCGGCACCACAGGTATATTTTCC
CCCTAAAGCTCACAAGAAAAGAAATAAAGAAATGATCAAAAGACTAAAAT
AAGAGCGCTGAGAATCTCTGGACCACTTTGTGGGTGTTTGGGCGCGACTG
TTACGAATATTCCTCGCACCAGTCTGGACCATTACAAATGCCAACAATCG
CAGCAGCCACAAGTAATCAAAATCCATCAACGAGTGGTGCCCTGTGTGTC
GAAGCAGGAACGTCGGAAGACGTGGGAGGCGAGGATTGATGCTGCCACAC
AGCGAAAGCCAGCAGGCCAGACGAGGGCTAAATCGTCTTCTGCTCTGCGC
CCGGGCAACACTCTTCCTCAACCCATCTCCACCACCGATTCGCGTCGCCG
AAAGAAGCGAAGAAAGCGGCGGTGGGGAGGCCCGAGAATATTTCGTCGTG
GAAACTACGGCTGGCTGACGTCGTGCGCGGAGCCGAGACAGTGGGAACCG
CAACTCAAACTTCTCGAAGACAAAGGCAAGGGTAGCGAAAGCCACCCGGC
AACACCCATCTCAGACGTCTCGAGAACATGGTCGCTGACGGAAAAGAACG
CCCCACGCCCAGTGCTGAGGCGCGGCGAGCGCCACAATCAGTCGGAGTAC
AACCCGCAGCACCGCGATCTGCCGCGAGAGAAGGACGGGTACCCCGGTCC
GAAGTACGACCGACCCCCCGGAGCGTTTGGAAGAACGGGCGGCGGTGGCG
GAACGGTCGCCCCGAGCGCCTTTATGTCTTCGCTGGATCGCTTCCCCCGT
GGCCGGCTGTTTTCTGAGGAGGAAATACGAGAAAGGGAAGCCACTCCAGG
CCCAGAAGCGTACGACGTTGGGCTGGAAAACCGCTTGGAAGGGTGTTCTT
TTGAAAAGATGTACGGGTCATTGGAGACGCTCGCGTCTTGGGGTAGTCTG
GGGGCTAGCAGAGCAGGGGGGGGGGTATGCAGTAACGACAAGGTTGCTGC
GGACGGTATAGTACACGAGAGCGAGAATACTAACAAGGGAACGAACATTA
GTAAGAGTGGGAACGGGGGAGTGGAGGAGGAAGGATACGCCAAAGACCGG
CAATCAGTAGCGGAGCTGGCCGAACGAAATTCTTCCCGTCGTTCTCACGC
ACCCTGTGTGGCTGGGCAGTCGACGTTGTCCTCGCCAGCGAAACTGGAGA
CCAACAGCGCTCGCCGCAGTAGCAACGGGCGGCGGCAGCACTGTTCTCGA
CTATCACCGGCATCGTCGGTGGCGGCTTGTCGCGGCGTGCCGTGTCCGGA
CTGTGCGAGCGTCGAGGTAGCCACCGCCGCGGGCACCTTCGCCGCCGCGT
CCGCCTCCCTGTCAGACGCGAACCTGTTCCGACGGGCGAGGACGATCGGC
GCAAGCGTCCGCTTCGGCGACATGCCCCGCCTCCGCAGCGCCCCGGCCTT
CACGATCGGCAGGGGCCAGAGGGACGTCTCTTCGCGGCTCCTCCATACCA
CGCCAGCGGAAGCACTCTACAAGGAGGACCGTCTTGGGCGGAGCGGGAAG
GGGCCAACGACGGCCTCTCCCCGGGCGGGAGAACGACTCACCAGACCCCG
GCCGATTGCGGCGAGAGTCGTCCTCCCGAAACAGGGTCCACGCGCTTCCG
CGGGGGGGGGCTCGGAGGGAGGAAAATCGTCGGCGGCGGCGGGGGGAGAA
GGAGGGATGGAGGTTGCCGAGAGAGGGGTGATCGTGGTTGATGGGGCTCT
TGGAACGCAGGTAAAATCCCGCCGACCCACCAGCCCTAGCTTTACCCTAG
CGGGGCCGCGGCGTGCGGCAACCCTGTTCCACGAGCGGCTTCGGTACGAT
GGAAAGGTGAGCGAAGTGCTTGCTTTTTTCTCCGGGGGATAAGTCTAGGC
AAAGATCATGGTTCGCTCCTCACTCTCTCACACTCACGCGACGTCTAGCT
TTGAACAAGTGCCTCGTTTCTTGATCTGTTGTTGAACACAGTTGTTCCCG
TTGGGATTTGATTGCCCACTAGTCTTGGTTCTTTCATGTGCTGGCTTTGG
AACATTGCGAGACGCCGTGTAGAAAGAGATGTTTGGCGTTTTCCGCCAAG
GCTCTTGTCGCTTGTTGATATGTGCCTGTTGTCTACCTGCTCGTACGTGA
GACAAAATAAACCTGCTACATACGGCTTTCAGTTGAGGTCAACAAGCACA
CAACCAGAGACGTTTGCCCAGCAGCGTGAGCTCGAGATCTCGCCTAGAAG
ACAACCAAGACTGACTCTATCGCTTGTTACCATGATCCCGAACCTGCGCG
CAATACACGAAATTCTGAGAGCCCAAGATGTTGGTCGGGACTCTGTACCG
TCTAGCACGGTTGATCCGGCGGCGAGCCTTCCTCAGTTTTGCTGTCCCGG
CGGCCTTGAGTTTTCTAGACGCAGTCGTTTTCGCTGGCGCTCGCGTTTCT
TGACGCTGTGATGCTACAGGCGCTGTCTGTGAGGCAACAAGATCAAGCGC
AGCCAAAGATCTTCTTCAATGCCCACGTTCCACCAATCAATGCAGAAGAC
GAGTGACGGGGAACGTTTTTCTTGGAGAGAGCCGGCTTCCTTCAGTCCCT
ACGAAAATGAGGTGGCTTGCTTCCCAGCATTGCGTCTTCTTACGAAAGCC
CGCGAGCGATAGGCAGAGTCATGATGGTTCAATCCATAGTAGGGTAGCAG
AGTAACCCTTCTGTGTGACCAGGGATTCTAGCTCCTACACGGCAGAAATG
CTGTGTGTGTGAGCCTTAGGTATAATTGATGAAAATAAAAGAGAGAAACG
AAAGAGGTCTCCTTGTCCAGGTGTAATCTGTGAACACCGAACCAGAGAAC
CGATTTGCTTGTGTTTTTCAGACTTTCCAGACGGAGGCAGCCTCCTCCTC
AGCGTAGGTGCGTCCTCGAAGAAAGAGGTACAATACGGGGTGTGTTATTG
TTTTTATTGTCTGCTTTGCAACAGCAGTCTCTCTCCCTTTTGGTCTTCTT
GGTCCACCACCATGCGCAGCAATGCCACCGTCTTTGTTGCGTCTGAGTTT
GTACAGAATGTTGGAAACGGGACATGTCGAGTCGTGAAGTATGGCACCGA
GAGGTCGATAGTGTCAATCCGAGATGTCACCGCCGCTACCTTTTCGAACA
CGATGTTTGTTCTGCTGTGTGTACTCCTCTCCTACAAACGTCCAATTACC
AAGCACCATCCCAACCTTGGCCATGCTACTGCAGCAAGCCAAACACAAAC
GAATGGTTCGCCATTTCTATTTTCCCGAAAACATCGTATGTATCACACCG
TCCACTCTTACCCTGACTCTGGAACGCAACTCTAACAAAACAGAATACTA
TTTTTTTCACTGCGAGCTCTGCTTCAATCTTATCCCCGAGGTAATGCTCC
ATGCGGTAGCAGAGGGTCCGGGCGTGTTCGGCCTGTCGCAGTTCTTCATG
TAGCACAGCCCAAAGTTTTTGTCAAAAGAAAAGGCTTGGCAACCAGCCCT
TCCGCCACACGCGGCGCAGCAGTCACCGAGAGAACCAGCCCTGACGGGTG
ATTTTCGAAGAGTCGTCCCGACCGACCGTTGGGGGTAAG

Coding sequence (CDS) from alignment at chr_27:5766229..5770967+

>Ec-27_006220.1 ID=Ec-27_006220.1|Name=Ec-27_006220.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2403bp|location=Sequence derived from alignment at chr_27:5766229..5770967+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCTCATTCTTCTTCCGAAGAAACACAGGACATCCCTGAACAACAGCC
AAACGGCTGCACGGAGGCACATAAAAATCATGCCGTCACACTGCCGGCGA
AGGTCCCGGGGCCCGGGCCTGGGGACTACAATGTCACGCCTCCTACAATT
GGGCAGAACGGCCACGCGGTTAGGTTCGGTTACCCCGGACTAGGGAGAAA
GTACCCGCCGAGAACCCCGGATCAACCGCGAGCAGAGATCCCGTGCACCT
ACGCCGAGCCCGCGCACGTTTCTAGCCTCAACAATCAGTTGACCTCTGAT
CGGCCCACGTCTTACGCGGTTTTCTTCGGTGCGGCACCTCGTTTCCAGGG
GAAGTGTTCAGTTTCAAATCAAGCCAAAGATGTGCTTCACGTTGCTCACG
CCAAGCCAATGGGACGACGAAGCCCAACGGTGGCCGCCGCCAGCGGTTCT
ACTACAACAACTACAAGTCCGAGCGGACCTGGTCCCGGGGACTACGATGT
CGCACATCATGCAGTCGGGCAGAACGGCCCCGCGATCACGTTCGGCGACC
CCGCCCTGGGGGGGAAAAGGTACCCGCCGAGGACCCCGGACCAACCGCGA
GCCGAAGTCCCGTGCACCTACGCCGAGCCTGGGCATATCTCTTGCCTGCG
CCACCAATTGACCTCGGATCGACCCACGTCTCCCGCGGTCTTCTTTGGCG
GAGCACCTCGTTTCCAGGAACGTCGGAAGACGTGGGAGGCGAGGATTGAT
GCTGCCACACAGCGAAAGCCAGCAGGCCAGACGAGGGCTAAATCGTCTTC
TGCTCTGCGCCCGGGCAACACTCTTCCTCAACCCATCTCCACCACCGATT
CGCGTCGCCGAAAGAAGCGAAGAAAGCGGCGGTGGGGAGGCCCGAGAATA
TTTCGTCGTGGAAACTACGGCTGGCTGACGTCGTGCGCGGAGCCGAGACA
GTGGGAACCGCAACTCAAACTTCTCGAAGACAAAGGCAAGGGTAGCGAAA
GCCACCCGGCAACACCCATCTCAGACGTCTCGAGAACATGGTCGCTGACG
GAAAAGAACGCCCCACGCCCAGTGCTGAGGCGCGGCGAGCGCCACAATCA
GTCGGAGTACAACCCGCAGCACCGCGATCTGCCGCGAGAGAAGGACGGGT
ACCCCGGTCCGAAGTACGACCGACCCCCCGGAGCGTTTGGAAGAACGGGC
GGCGGTGGCGGAACGGTCGCCCCGAGCGCCTTTATGTCTTCGCTGGATCG
CTTCCCCCGTGGCCGGCTGTTTTCTGAGGAGGAAATACGAGAAAGGGAAG
CCACTCCAGGCCCAGAAGCGTACGACGTTGGGCTGGAAAACCGCTTGGAA
GGGTGTTCTTTTGAAAAGATGTACGGGTCATTGGAGACGCTCGCGTCTTG
GGGTAGTCTGGGGGCTAGCAGAGCAGGGGGGGGGGTATGCAGTAACGACA
AGGTTGCTGCGGACGGTATAGTACACGAGAGCGAGAATACTAACAAGGGA
ACGAACATTAGTAAGAGTGGGAACGGGGGAGTGGAGGAGGAAGGATACGC
CAAAGACCGGCAATCAGTAGCGGAGCTGGCCGAACGAAATTCTTCCCGTC
GTTCTCACGCACCCTGTGTGGCTGGGCAGTCGACGTTGTCCTCGCCAGCG
AAACTGGAGACCAACAGCGCTCGCCGCAGTAGCAACGGGCGGCGGCAGCA
CTGTTCTCGACTATCACCGGCATCGTCGGTGGCGGCTTGTCGCGGCGTGC
CGTGTCCGGACTGTGCGAGCGTCGAGGTAGCCACCGCCGCGGGCACCTTC
GCCGCCGCGTCCGCCTCCCTGTCAGACGCGAACCTGTTCCGACGGGCGAG
GACGATCGGCGCAAGCGTCCGCTTCGGCGACATGCCCCGCCTCCGCAGCG
CCCCGGCCTTCACGATCGGCAGGGGCCAGAGGGACGTCTCTTCGCGGCTC
CTCCATACCACGCCAGCGGAAGCACTCTACAAGGAGGACCGTCTTGGGCG
GAGCGGGAAGGGGCCAACGACGGCCTCTCCCCGGGCGGGAGAACGACTCA
CCAGACCCCGGCCGATTGCGGCGAGAGTCGTCCTCCCGAAACAGGGTCCA
CGCGCTTCCGCGGGGGGGGGCTCGGAGGGAGGAAAATCGTCGGCGGCGGC
GGGGGGAGAAGGAGGGATGGAGGTTGCCGAGAGAGGGGTGATCGTGGTTG
ATGGGGCTCTTGGAACGCAGGTAAAATCCCGCCGACCCACCAGCCCTAGC
TTTACCCTAGCGGGGCCGCGGCGTGCGGCAACCCTGTTCCACGAGCGGCT
TCGGTACGATGGAAAGGCGCTGTCTGTGAGGCAACAAGATCAAGCGCAGC
CAAAGATCTTCTTCAATGCCCACGTTCCACCAATCAATGCAGAAGACGAG
TGA

Synonyms

The feature 'Ec-27_006220.1' has the following synonyms


Synonym
Esi0000_0056
Esi_0000_0056