Ec-27_006200.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006200.1
Unique NameEc-27_006200.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length138
Homology
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BLAST of Ec-27_006200.1 vs. uniprot
Match: D8LAW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAW4_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 2.880e-95
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 
Query:    1 MSTIPSFLVGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRKMPRQFGRPKGERGGCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDARTKWNAAVLRCSDTVFSALYGRGSATEGKAEGGDEPRDS 411
            MSTIPSFLVGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRKMPRQFGRPKGERGGCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDARTKWNAAVLRCSDTVFSALYGRGSATEGKAEGGDEPRDS
Sbjct:    1 MSTIPSFLVGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRKMPRQFGRPKGERGGCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDARTKWNAAVLRCSDTVFSALYGRGSATEGKAEGGDEPRDS 137
The following BLAST results are available for this feature:
BLAST of Ec-27_006200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW4_ECTSI2.880e-95100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5755983..5757484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length414
Hectar predicted targeting categorysignal peptide
Gene idEc-27_006200.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006200Ec-27_006200Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5755848..5763830 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006200.1.1Ec-27_006200.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5755983..5756132 +
Ec-27_006200.1.2Ec-27_006200.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5757221..5757484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006200.1CDS:Ec-27_006200.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5755983..5756132 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006200.1Ec-27_006200.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5755983..5757484 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006200.1 ID=Ec-27_006200.1|Name=Ec-27_006200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=138bp
MSTIPSFLVGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRK
MPRQFGRPKGERGGCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDART
KWNAAVLRCSDTVFSALYGRGSATEGKAEGGDEPRDS*
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spliced messenger RNA

>Ec-27_006200.1 ID=Ec-27_006200.1|Name=Ec-27_006200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=414bp|location=Sequence derived from alignment at chr_27:5755983..5757484+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACCATCCCATCATTTCTTGTGGGGCTGGTTGCCTCTGGTGTGGG
CTACGCGTACCTGTCGCGCGATCTGGTCACCTCTAGGAATAAGCTAATGT
CGAAGCACTTCAAGGCCGACGGGGTCGAGCCCTACTACCCTGTGCGGAAG
ATGCCTCGCCAGTTTGGGAGACCAAAAGGCGAGCGCGGCGGTTGCCCACG
CGGCTCTAGCTTCAATTCGGAAACGAGCAGGGGGGTCGTCAGCGGCTTAC
CGGAACCCGCGCCAGCGGGTGAGCACCACCTCGTCACGGATGCCCGCACC
AAGTGGAACGCGGCTGTTTTGCGATGCTCCGATACGGTATTCAGCGCCTT
GTATGGCCGCGGAAGTGCGACGGAGGGCAAGGCCGAGGGTGGTGACGAAC
CACGGGATTCATGA
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protein sequence of Ec-27_006200.1

>Ec-27_006200.1 ID=Ec-27_006200.1|Name=Ec-27_006200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=138bp
MSTIPSFLVGLVASGVGYAYLSRDLVTSRNKLMSKHFKADGVEPYYPVRK
MPRQFGRPKGERGGCPRGSSFNSETSRGVVSGLPEPAPAGEHHLVTDART
KWNAAVLRCSDTVFSALYGRGSATEGKAEGGDEPRDS*
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mRNA from alignment at chr_27:5755983..5757484+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006200.1 ID=Ec-27_006200.1|Name=Ec-27_006200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1502bp|location=Sequence derived from alignment at chr_27:5755983..5757484+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTACCATCCCATCATTTCTTGTGGGGCTGGTTGCCTCTGGTGTGGG
CTACGCGTACCTGTCGCGCGATCTGGTCACCTCTAGGAATAAGCTAATGT
CGAAGCACTTCAAGGCCGACGGGGTCGAGCCCTACTACCCTGTGCGGAAG
GTGATGTGCAGTACTACTGTAGTGCCTTGGGGTGCCACCCTACTTCACGG
GGTTGGATGGAGTGAACGCGCAGTTAGTTTGACTGTATGGTTCCAACGGC
AGTATCATACACCTGGAGTTTTTGCTGTTGTCGTTTGCATTCTGGTGTGT
GTAGAAGACATACACATTTGATGTACCAATATAAAATATACCAATATAAA
ATATACGGGGGTGTTTGAATTATTTAATTGTTTTTGGGTTTGAGGTGTAC
ATGAAGGTGGTACAATTAAAATATATGGGGGTGTTTGATTTAATTAGTTG
TTTTTGGGTTTGGGGAGTACATATGGAGTATGTATGTACTCAAACGTGTC
CGCGTGTAGAGCTGTACATACTGCTGTAGGGGCAAGAACTTGAAGGCACT
GCTGCATATGGTCCGGTATCATCGACACTCTCAGAATCTGTAGCACGCTG
CCTGTGGGCCCCCATTAGGAAAATAATCAACAACCGCGGCAACACTAGCA
TGTGGCGACTATGGTCATGATCATGTGGGATTATTTTAGCTGACAATTAG
TTTGCACTTCCGAAGTGTTTTCAGCCGCTACTGAATACTCCATACTCGAT
GAATACTGGCGCCCCCAGCAAGCTTCCGCAGACTACCAGCAAGTTCCCAC
ACCAGTTTCAAATGGACCTGGCCTGCTCCACTAGTCGATCAACACGTCAC
GACGTTGGCGATGTAGCTATAGCGTGAGCGCCTGAACTACTTCAAAGTTA
AGGTTTGTGATGATGTATTAGTATACCGTAGGGTGCTCGATCTTCACTCG
TCTTACTCGCACCCTCAACCGACCGTGTCGACGAAGTCGGAGTGTCCACC
AATGTTTTCGCATGCATTTCCCATGCACAGGACAGGCAGGTCACATGTTT
GCACCCCTCTAACTTCAGGGTACCCTACAACAACTGCACGTACCCTGCAA
CACCTGACAACAAAGACGATCATTCCTGCACCTAATATTCACGTCCTCTA
CTCCAGCTTGTGACCAGTTTTCCTGTTTGTCTTGCGATCCTGGCCCATTC
CCTCGGTGGCCCTCAAAAAATATGTGTTGCCGTGCCAGATGCCTCGCCAG
TTTGGGAGACCAAAAGGCGAGCGCGGCGGTTGCCCACGCGGCTCTAGCTT
CAATTCGGAAACGAGCAGGGGGGTCGTCAGCGGCTTACCGGAACCCGCGC
CAGCGGGTGAGCACCACCTCGTCACGGATGCCCGCACCAAGTGGAACGCG
GCTGTTTTGCGATGCTCCGATACGGTATTCAGCGCCTTGTATGGCCGCGG
AAGTGCGACGGAGGGCAAGGCCGAGGGTGGTGACGAACCACGGGATTCAT
GA
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Coding sequence (CDS) from alignment at chr_27:5755983..5757484+

>Ec-27_006200.1 ID=Ec-27_006200.1|Name=Ec-27_006200.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=414bp|location=Sequence derived from alignment at chr_27:5755983..5757484+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTACCATCCCATCATTTCTTGTGGGGCTGGTTGCCTCTGGTGTGGG
CTACGCGTACCTGTCGCGCGATCTGGTCACCTCTAGGAATAAGCTAATGT
CGAAGCACTTCAAGGCCGACGGGGTCGAGCCCTACTACCCTGTGCGGAAG
ATGCCTCGCCAGTTTGGGAGACCAAAAGGCGAGCGCGGCGGTTGCCCACG
CGGCTCTAGCTTCAATTCGGAAACGAGCAGGGGGGTCGTCAGCGGCTTAC
CGGAACCCGCGCCAGCGGGTGAGCACCACCTCGTCACGGATGCCCGCACC
AAGTGGAACGCGGCTGTTTTGCGATGCTCCGATACGGTATTCAGCGCCTT
GTATGGCCGCGGAAGTGCGACGGAGGGCAAGGCCGAGGGTGGTGACGAAC
CACGGGATTCATGA
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Synonyms
The feature 'Ec-27_006200.1' has the following synonyms
Synonym
Esi0000_0059
Esi_0000_0059