Ec-27_006190.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006190.1
Unique NameEc-27_006190.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length177
Homology
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BLAST of Ec-27_006190.1 vs. uniprot
Match: D8LAW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAW5_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 3.100e-127
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 
Query:    1 MVREDDFAWQVIVVQTRRDHTGITKQQELPLQITITYGDEKVSTPLVRARQPLWNFWTQLPDKGGSEGMVFSLVGRDSSTGKISVEGEARLDLSKFRRSGQSFELWETLHPTKARGVLPMVVKSARPADSTAEVHLTITYCPNTQKKDIPDGEDTDCLMCATFATFGLSRGSCSIS 528
            MVREDDFAWQVIVVQTRRDHTGITKQQELPLQITITYGDEKVSTPLVRARQPLWNFWTQLPDKGGSEGMVFSLVGRDSSTGKISVEGEARLDLSKFRRSGQSFELWETLHPTKARGVLPMVVKSARPADSTAEVHLTITYCPNTQKKDIPDGEDTDCLMCATFATFGLSRGSCSIS
Sbjct:    1 MVREDDFAWQVIVVQTRRDHTGITKQQELPLQITITYGDEKVSTPLVRARQPLWNFWTQLPDKGGSEGMVFSLVGRDSSTGKISVEGEARLDLSKFRRSGQSFELWETLHPTKARGVLPMVVKSARPADSTAEVHLTITYCPNTQKKDIPDGEDTDCLMCATFATFGLSRGSCSIS 176
The following BLAST results are available for this feature:
BLAST of Ec-27_006190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW5_ECTSI3.100e-127100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5750356..5755618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length531
Hectar predicted targeting categoryother localisation
Gene idEc-27_006190.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006190Ec-27_006190Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5750356..5755618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006190.1Ec-27_006190.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5750356..5755618 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006190.1.5Ec-27_006190.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5750356..5750445 -
Ec-27_006190.1.4Ec-27_006190.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5751542..5751734 -
Ec-27_006190.1.3Ec-27_006190.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5752444..5752610 -
Ec-27_006190.1.2Ec-27_006190.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5753386..5753454 -
Ec-27_006190.1.1Ec-27_006190.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5755607..5755618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006190.1CDS:Ec-27_006190.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5750356..5750445 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006190.1 ID=Ec-27_006190.1|Name=Ec-27_006190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=177bp
MVREDDFAWQVIVVQTRRDHTGITKQQELPLQITITYGDEKVSTPLVRAR
QPLWNFWTQLPDKGGSEGMVFSLVGRDSSTGKISVEGEARLDLSKFRRSG
QSFELWETLHPTKARGVLPMVVKSARPADSTAEVHLTITYCPNTQKKDIP
DGEDTDCLMCATFATFGLSRGSCSIS*
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spliced messenger RNA

>Ec-27_006190.1 ID=Ec-27_006190.1|Name=Ec-27_006190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=531bp|location=Sequence derived from alignment at chr_27:5750356..5755618- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGAGAGGATGATTTCGCGTGGCAAGTTATCGTCGTGCAGACTCG
AAGAGACCACACGGGCATCACCAAACAACAGGAGCTACCGCTCCAGATCA
CCATCACCTACGGAGACGAGAAGGTTTCTACGCCTCTGGTGCGAGCGAGA
CAGCCGCTTTGGAACTTCTGGACCCAGCTGCCAGACAAGGGGGGGTCGGA
GGGTATGGTGTTTTCTCTTGTCGGCCGGGACAGCTCAACTGGGAAAATTT
CGGTGGAAGGAGAGGCGAGGCTCGATCTTTCCAAGTTTCGGCGGAGTGGC
CAGAGCTTCGAGCTATGGGAGACGTTGCACCCGACGAAGGCGCGAGGGGT
CTTGCCGATGGTCGTTAAATCCGCCCGCCCGGCTGATTCCACAGCGGAGG
TCCACCTCACCATCACCTACTGCCCGAATACCCAGAAGAAGGATATACCC
GATGGCGAAGATACGGATTGCCTGATGTGCGCAACGTTTGCAACGTTCGG
ATTATCTCGAGGGTCGTGCTCGATATCGTAA
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protein sequence of Ec-27_006190.1

>Ec-27_006190.1 ID=Ec-27_006190.1|Name=Ec-27_006190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=177bp
MVREDDFAWQVIVVQTRRDHTGITKQQELPLQITITYGDEKVSTPLVRAR
QPLWNFWTQLPDKGGSEGMVFSLVGRDSSTGKISVEGEARLDLSKFRRSG
QSFELWETLHPTKARGVLPMVVKSARPADSTAEVHLTITYCPNTQKKDIP
DGEDTDCLMCATFATFGLSRGSCSIS*
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mRNA from alignment at chr_27:5750356..5755618-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006190.1 ID=Ec-27_006190.1|Name=Ec-27_006190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5263bp|location=Sequence derived from alignment at chr_27:5750356..5755618- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGCGAGAGGTGAGAGCCTTGGCGTTGCATCATGAAAAGCTTTTGTT
GTTGCTGGCGTCACAGACAAAAATCTTGCATAGTTTTATTTGCTTCCCAG
CTGTCGGGTTCGGGGTCCTCTAGTTTTGAGGCATGTCGCACTAGGCCCCA
CGTCGTTTCAGGGGGGGAAGCCGCGCTCGATCAAGGTTGTGCAACGACCA
GGGACCGCTGTGCCAGACATCCTCGTCAGTGCAGCTTATTTTCAAGAAGG
ATAATTTCAAAAATCTCCTACTACATTGTATCGCGACGAACAACGCTCGT
CGTTTTTTTTTTTTGCACGTCTCGCTTTTGGCCCCTGCAGCGCCGGAAAA
ACATAATTTCACTAAATACGTTCCTGCTCTACAGCAGGACTGCTGTACAT
AGTAGCCGTATGCATGGGGCCACACTGACACTTCAGCGTGCGTAGCATGA
AGCATTCGGCATGTACTGATACGTTAAGTCCATCTCATCGAGGTCTCTAA
TTCAGTCTATTCCGTACATGTAGATAGATAGACTTCACGGTCGAATACAC
TGACAAACCCGGAATAACCTTGATCATCACTACCGTATGTATTTATTTTC
GTTCGATGTTGCTCTTGTTGTCACGATTTTGGGACGGTTCCGATCCTGTT
GAGTACCTCCCAACATTCGGTACGGTTCCTACTGACCCGGACACCTTCGT
AAGCAAGCGATGTAGCTACTGCCATAGCCTAGACCAACTGTTTCCACCTG
TACTCCGATTTTTTTTTTTTTTTGAAAAGCCGAAGAGGATCCACTAAAAC
AAGCGAAAAATCAACAATACTCGTACTTCCAAAGGCCCCCTAGACACAGC
AGTTAATAGCGGAATTTGAGCAAGCAACGTTTTGGACAAAAGAAAGCGGT
TCGATAAGGGACATCGACGCACAGAGAGAGCCCGTCGCTGCCCCCTCCCA
CTCGCCGCGCAAGGGCCAGGCAAACGAAACGAACACAAGTCAACCATGGA
CGTGGAAGATGGTTGAAACGTACACTTCAAGCGACGACGAGCGGAGCCGA
AGTTCGCCCACCTCCACACCTCATGCACTCTCGAGATATTTGTCTGCTAG
ATAACCACCACCACCACCACCACCATGTCCCATGAACTTATCATCCTTTG
CCGCCACTGCTGCCCACCCGCTCCAAACGTGTCTACTGGATGTACATCGT
ATAAATATCGTCTATATTCCTTTCTGGTGTCACCACGCCGACCGCTACTA
CGGTGTTGGGGTGTTGTCTTTCAATTTTTTCTGGAGGTCGGGTGTTGGTT
AGACTACTGGTGTGCTTCCTTTTTCTTTACGTTGGCACCAGCCGGGGGTC
GCAGAGGGGTAGCCCTGCACGTGCTTTTTTTCTTCTCTCCTCCCCTCCTG
CTCTGCGATAATGCGGCAAGGCAATCTAACCGTGATCACTGTACAATAGA
GGCGGAGAAAATTTCACCCCCCCTATGGACCGACTTTCAAAGCTCGATTC
GATTGCTCCACGACCAAGATTGTCTGTACCGCACCGTGATATTCCGTAAG
AGGCGGAGAGATGCCACCCCCCCTAAACCGACTTTCAAAGGTCGATGCGA
TTGCTCCACAACCAAGTGGGTGCGGAAATAGCTCGATACGTCTATACATT
CGGAAAGACCTGGACGAAACGTTTCCAAACCCACCCTTTTTGGTGTTGGC
ACATGATTAGTTGTGGAGCATTCGTGTACTGAAAATCGGTTCAAGGGGGT
GGGTGCCATCTCTCCGCCTCTTCCGGTATGTGGCCATGGCGCAGGGGGCT
GATGTCCTGACAGATTGTTTTCCAACAGGAGGATGGCGTTTACTATGCAT
GCGTCGACATTCACTCATATGGCTGTCTGCTGTCGGCGTAAATCAGGACT
CGCGCGTATTTGTCCGTGACTTAGACGTTGTTCCGAGTGGGTCTTGCGAG
GACAGCGGCAGCGTCGTGCTCCTCGCCATTTTTCTCAGCTGCCCGCTTGA
CGTATATTGTTGTCCTGCAATATTCGTAAGCTTGTTCCTGGCGTGCGGCG
CCTTGTCCCCTGTTCTTCTCTGTTGTTTTGATTGCCCTTTCCATTCTTCT
TCTGCTGCTGCTGCTGCTGCTGCCCCTGCTCTCCCCCCTGGGTTGATGAA
CCCAATGACTCCAGGATGATTTCGCGTGGCAAGTTATCGTCGTGCAGACT
CGAAGAGACCACACGGGCATCACCAAACAACAGGTAGGCTGAAAACGAGC
ACCAGCCAACTGTATACAATGTCCTCTCTCAATCGCCTTGACGTAAGTAC
CATGTGACTACTACGGAGTATTGGAGGTGCCGCGGCGAGATATCCGGGGG
GCGGGGGGGGAGATATTGCACCTCGTCCAGAGACGGATCCTATCGAGAGA
TTGGAATTTTGCGAGCAGTTGCAAAGGATATCAACGCCCTCTTCCTATGT
TTTTGTTGGAACCGCAGTTGTTTCACCCTCCATACAATATAGAGCATGAG
TTCCGTGCCCGCTCACTGATCTACTTCCATGTTATCTCCAGTAATGGATT
TGGAAACCCGTCGTGTCGAGGTGCAGACGGTGACACCGCCCCCTCAATGC
CCCATGCGTACAGTCCATTGGCGTACCTCCGATAACAAGTAGAGCACCCG
CTCCCCCTCTTTCCTTTGTGTAACATAATTTTTAGCACGAAACTAGGCGA
CTACGAGCGAAACGAAGGCCCCAAGGAAAAGCACGAGCGTGCAGAAACGG
CACCCGCCAAGCACCATGCGGTTGCAAAACAACGCCTCCCTCGACCCGAG
CCGTGTGCCACCTTTCGCTGCAATATGTACTCCCCAAACCTGAAAAATGA
AAAGCACCCAAAACAAAAACACAACCAACACCCCTAATTCACATCTCCTC
CCCCCCCCCCCCCCTGATAACTTTACAACCTTCCCTTGCTTATGTGTCGA
CGCGCTAATTGCCTTTTTTCTCGGAACAAACTCTCCCGCCGCCTCCTGCC
GCACTCAGGAGCTACCGCTCCAGATCACCATCACCTACGGAGACGAGAAG
GTTTCTACGCCTCTGGTGCGAGCGAGACAGCCGCTTTGGAACTTCTGGAC
CCAGCTGCCAGACAAGGGGGGGTCGGAGGGTATGGTGTTTTCTCTTGTCG
GCCGGGACAGCTCAACTGGGAAAATGTGAGTGCTCTCTGTTGCTCTCTCT
CTCTCTCTCTCTCTAGCAGGTGGAGTCATTTCGTGCGGTCTAAATGTGTT
GTGTTAATCAACGGTTTCAAGAATTTATGTTTGAAAGCACTCTTGAGGTT
TTGTGCGTGGGACTCTGAAGGATTCGGAGTTCGTATGGGCTTGTGGTAGA
AGAAGAGAGTAGGCCACGGCGATGGGCCATGAAGCTGAACATCCAGGTTT
GGTGATGAGTTTTTTATATTAGCACTGCTGTAGTCTAACACCGGTGGGGC
GTGATGTTCCGGACAGAAACAAATCACCGAATCTTGAGCGTCGAAATATT
GATTAAATCTCTCAGTTCTACGGCAACATCATTGGTATGCACAATACAAC
TGCAAGCAAAAGAGTCTTGAGTCGAAATGTTGATAGCAACTTCTCTCGGA
CCTTCTTCCTGCTCTCCACTTCCCATCCCGCCTCTGTCCCTCACTCTTGC
TCTTCCCACCTCTCCATCCGCTCCGGCCCGTTGCCTTGTACTCATGAGAC
AACCTACAATAACGCCTCTTTGCTTCCGCTGACGCCCCCCCCCCCCCCCC
CAAAATGCATTACAAATATACATCTCANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAAAATACCCCTTTTTTTTTTAGG
GGGGGCCCCCCCCCCCCCCCCCCCCCCCCCCCAGTTCGGTGGAAGGAGAG
GCGAGGCTCGATCTTTCCAAGTTTCGGCGGAGTGGCCAGAGCTTCGAGCT
ATGGGAGACGTTGCACCCGACGAAGGCGCGAGGGGTCTTGCCGATGGTCG
TTAAATCCGCCCGCCCGGCTGATTCCACAGCGGAGGTCCACCTCACCATC
ACCTACTGCCCGAATACCCAGAAGAAGGTGTGTAACACAATATGGGATTT
CCCGTGTGTATCATGAGAGGATTTCTCGTGGGCATCATGAGCCGAACCAA
AGAACGCCCGAAGCCAGTTAGAGCTCCTCTTCTGGGTTTTCCGGTATCGG
GACCGCGAGCCAAGTGGCTTAGACCTAAGTTGCAGCCACGGTGTGTCGGT
ACGCACGTTTCAGTAGAGATACGAACTACCAGCCTCGACATTTCGTTCGC
AAATGTTGGTAGACATTCTTGCCAGCCTCGGTGTTTGAGTTCATAAGTAT
GTGTCATCAGACATGGTGCAAGCTTTAGCTTCGGTGTGTCGCTTCGTTCC
TACGGTATGCATGTGTGCGTCATTCGACGCGAGTGGACGTATGCATACCG
CAGAAGAAAGGGATTGGCGTAAGTAGCAGGCAGTTATAGCGCAATTGGCG
GCGATGCTATAATGCCGCTGCCGTAGCGATGATGGTCGAGTAATTAGCAG
GCAATTTTCTACCCGCTGCTGGTGCACAGCCGAGGGTCGATCGCAGTGGA
ATGCTTCAGATCATTTCTTGCATCTTTGGTAGATGGACAAGCGACATCTC
TGCTAGAGGCGGCCGCCAATCGTCCTCGCTCGTCCGGATGTAGTGTTCCC
AGTCGGTACGATACGTCGTATGGTCCGTGAGCAACAGTTGGAGGTTGTTG
TTGCCCCCCCCCCCCCCCCCCCTTTTTCCACTTGGGGTGCCGGGGTAAAT
ATTCAATTTTCACCACGGGATTTTTTTTTTTGGGGAAACCCCCAAACCCC
CCAACCCCACCCCCCCCTCTGGGTTTTCTTTTTTGGGATTCGGGGGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTTTTTCCCCCCCCCCCCCCCCGCCAT
TGTAAAAGTGGGGATGCGAGGAAAATAATTTAATTTTTATTAGGCCATTG
GTTTTCAGGGGTACACCCCAAACCCCCCCCCCCCCCCCCCCCCCCCGCGT
GTTCGTTGTTCGGATCTCGGCAGGATATACCCGATGGCGAAGATACGGAT
TGCCTGATGTGCGCAACGTTTGCAACGTTCGGATTATCTCGAGGGTCGTG
CTCGATATCGTAA
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Coding sequence (CDS) from alignment at chr_27:5750356..5755618-

>Ec-27_006190.1 ID=Ec-27_006190.1|Name=Ec-27_006190.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=531bp|location=Sequence derived from alignment at chr_27:5750356..5755618- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGCGAGAGGATGATTTCGCGTGGCAAGTTATCGTCGTGCAGACTCG
AAGAGACCACACGGGCATCACCAAACAACAGGAGCTACCGCTCCAGATCA
CCATCACCTACGGAGACGAGAAGGTTTCTACGCCTCTGGTGCGAGCGAGA
CAGCCGCTTTGGAACTTCTGGACCCAGCTGCCAGACAAGGGGGGGTCGGA
GGGTATGGTGTTTTCTCTTGTCGGCCGGGACAGCTCAACTGGGAAAATTT
CGGTGGAAGGAGAGGCGAGGCTCGATCTTTCCAAGTTTCGGCGGAGTGGC
CAGAGCTTCGAGCTATGGGAGACGTTGCACCCGACGAAGGCGCGAGGGGT
CTTGCCGATGGTCGTTAAATCCGCCCGCCCGGCTGATTCCACAGCGGAGG
TCCACCTCACCATCACCTACTGCCCGAATACCCAGAAGAAGGATATACCC
GATGGCGAAGATACGGATTGCCTGATGTGCGCAACGTTTGCAACGTTCGG
ATTATCTCGAGGGTCGTGCTCGATATCGTAA
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Synonyms
The feature 'Ec-27_006190.1' has the following synonyms
Synonym
Esi0000_0060
Esi_0000_0060