Ec-27_006150.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006150.1
Unique NameEc-27_006150.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length329
Homology
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI)

HSP 1 Score: 598 bits (1543), Expect = 9.350e-213
Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 1 
Query:    1 MGGEATERRSPFAKLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQGFGRRGRESLAFGNFGARKQWVKEEEGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVAG 984
            MGGEATERRSPFAKLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQGFGRRGRESLAFGNFGARKQWVKEEEGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVAG
Sbjct:  162 MGGEATERRSPFAKLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQGFGRRGRESLAFGNFGARKQWVKEEEGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVAG 489
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE)

HSP 1 Score: 479 bits (1234), Expect = 9.110e-167
Identity = 268/328 (81.71%), Postives = 276/328 (84.15%), Query Frame = 1 
Query:    1 MGGEATERRSPFAKLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQGFGRRGRESLAFGNFGARKQWVKEEEGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVAG 984
            MGG++TER SPFAKLAGVGDGLRARARRLLVAE+EGRQKHDAG PRRRQGFGRR RESLAFGNFGARKQWVKEEE EVISAEMLA      A      +    DG       +                 XXXXXX     E AAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMV+NRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVP+EE AAAKK+ VAG
Sbjct:   99 MGGKSTERSSPFAKLAGVGDGLRARARRLLVAEMEGRQKHDAGAPRRRQGFGRRSRESLAFGNFGARKQWVKEEEEEVISAEMLARTMR--AWTRCWPSSSPMDGNMLPKSPASSSSGNSSHPLPRHAPSXXXXXXXXXXXEEAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPREEVAAAKKKNVAG 424
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: A0A835YQ35_9STRA (START domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ35_9STRA)

HSP 1 Score: 213 bits (543), Expect = 6.770e-66
Identity = 103/158 (65.19%), Postives = 124/158 (78.48%), Query Frame = 1 
Query:  457 AMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANS 930
            A GTL A A DL+ LF  N+RVHEYNDNC +VRDLE +S  +K++WA +PR+ PFKARDFVT V Y TL DGT+ V+NRPV H AA   K YVRAEILIATN+MR N  DP KTDF++V H+NPGG+ADS +GA +VN LCA+AP+ LL ALER+ANS
Sbjct:    2 ARGTLAAHAEDLFALFQSNDRVHEYNDNCADVRDLEVVSQHSKITWARSPRFGPFKARDFVTVVSYTTLADGTLAVVNRPVNHAAAPATKDYVRAEILIATNMMRANAHDPRKTDFVTVAHVNPGGVADSTLGANVVNMLCAQAPLKLLQALERAANS 159
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: A0A7S2RES9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES9_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.170e-62
Identity = 103/223 (46.19%), Postives = 150/223 (67.26%), Query Frame = 1 
Query:  268 NDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAP 936
            N A+V+++LAV+   GW +V+  +    +R ++                  D+ AAAKF+CVKA   L+A   D+YKLFLDN +VHEYN++C+++ D+ER+S DTKV+W+ T  + PFK RDFVT VHYR   DGT+MVLNRP  HP      ++ RAE+L+A N+MRP + D SKT+F  +TH+NPGG+ ++ +GA IVN++C++ PV+ +  LER+A S P
Sbjct:   82 NQANVDSMLAVVRGAGWRQVSSTNDHNRIRVYLKSVTPGTHLETEA----ADDVAAAKFSCVKATAILNASPHDVYKLFLDNSQVHEYNEHCQKLEDVERVSKDTKVAWSVTAPFGPFKPRDFVTMVHYRREPDGTLMVLNRPCNHPDRPPVPQFQRAELLLAGNVMRPVQGDKSKTEFTMITHVNPGGVVNNALGAAIVNRICSQGPVDFIRRLERAAQSHP 300
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: A0A7S3UPT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPT8_HETAK)

HSP 1 Score: 202 bits (513), Expect = 2.280e-58
Identity = 111/246 (45.12%), Postives = 157/246 (63.82%), Query Frame = 1 
Query:  244 EMLALQAENDASVEAVLA-VIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXR------------GIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGK-KYVRAEILIATNIMRPNREDP-SKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAP 936
            E   L A+N   V+ +L+ V + +GW  V E+ G+ V +KF+                             ++E  AAKFA VKA GT++A AS +Y+LFLDN RVHEYN  C +V+DL  LS+DTKV+WAC+PR+ P KARDF T VH R L DGT +V+NRP  H  A R   +Y+R+E+LIA ++MRPNR+DP +KTDF  +TH+N GGI ++   A ++N+LCA +P++L+  LE++A+  P
Sbjct:  145 EKAMLDAQNQRDVDRLLSEVTDDEGWGLVVERQGIKVWKKFLSPGRHSSLRDGESSSITAYDEQEQAALAAMEE-RAAKFAAVKAAGTINAPASSIYRLFLDNSRVHEYNSLCHKVKDLAYLSEDTKVTWACSPRFGPVKARDFCTVVHCRRLRDGTCVVVNRPAFHRGALRSDPQYIRSELLIAGHVMRPNRKDPENKTDFYVMTHVNLGGICETPPVAALINRLCASSPISLMKNLEKAASHQP 389
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: A0A6H5J623_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J623_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 2.290e-57
Identity = 128/328 (39.02%), Postives = 170/328 (51.83%), Query Frame = 1 
Query:   40 KLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQGFGRRGRESLAFGNFGARKQWVKEEEGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKF-----------------------VXXXXXXXXXXXXXXRGIVDEGAAA----------KFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 924
            ++AG  + LR R R L +  +  RQ  D             G + L  G            EGE    +M  LQ   D  V+ V+ V+  DGWE V E+ GVVV R++                       V               G  D+ A            +FACVKA   L      +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R  PFKARDF T VH+RTL DGT+  +++PVEHPAA R  +YVR+EIL+A N MRP   DPS+T+F+ VTH+NPGG A++R GA +VN LC  +PV  +  LE +A
Sbjct:  222 RIAGCAELLRRRGRELFLLGLRKRQNPDGS-----------GGDKLGMGK-----------EGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAPAAPAAHAQAAGVPKAEAYSASVGGRVEGSADDPAPVGEDSGKFRPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAA 527
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: D8LLJ0_ECTSI (START domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ0_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.830e-57
Identity = 125/328 (38.11%), Postives = 169/328 (51.52%), Query Frame = 1 
Query:   40 KLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQGFGRRGRESLAFGNFGARKQWVKEEEGEVISAEMLALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKF-----------------------VXXXXXXXXXXXXXXRGIVDEGAAA----------KFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 924
            ++AG  + LR R R L +  +  +Q  D                       G   +  K +EGE    +M  LQ   D  V+ V+ V+  DGWE V E+ GVVV R++                       V               G  D+              +FACVKA   L      +Y LF DN RV EYN++C+EV+DLE LS D+K++WA + R  PFKARDF T VH+RTL DGT+  +++PVEHPAA R  +YVR+EIL+A N MRP   DPS+T+F+ VTH+NPGG A++R GA +VN LC  +PV  +  LE +A
Sbjct:  255 RIAGCAELLRRRGRELFLLGLRKKQNPDG---------------------LGGEGKLGKGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAXXXXXXXXQAAGVPKAEASSAFVGGRVEGSADDSVPVGDDSGKSKPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAA 561
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: A0A7S1HKH9_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1HKH9_HEMAN)

HSP 1 Score: 183 bits (464), Expect = 6.950e-53
Identity = 93/226 (41.15%), Postives = 138/226 (61.06%), Query Frame = 1 
Query:  253 ALQAENDASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRP--VEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSA 924
            A+Q  N+  +  +  V+  D WE V    GV V RK                  I D     KF C+KA+ T++AR  D+Y L  D +RV EYND C    +L  LSDDT+++WAC+ +Y PFKARDF+T VH+R + DGT++V+++   +E   ++ G  YVR E+L+A N+MRP+  DP+KT+F ++ H+NPGG AD+ +G+++VN +C   PVN +  LE +A
Sbjct:   21 AVQTHNNELIGRLFNVMGGDDWEHVLCLGGVNVYRK-----------------RITDVPGGEKFYCIKAVRTINARPIDVYDLLKDPQRVSEYNDECALTEELPPLSDDTRLTWACSKKYGPFKARDFITRVHHRKMTDGTLVVMSQSEDIEWERSQPGTDYVRTEVLLAGNVMRPDPTDPTKTEFTTIAHVNPGGAADTPLGSRLVNHICTHGPVNFINKLEIAA 229
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: I2CRQ3_NANGC (Lipid transfer protein 5-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRQ3_NANGC)

HSP 1 Score: 177 bits (448), Expect = 1.370e-51
Identity = 82/144 (56.94%), Postives = 111/144 (77.08%), Query Frame = 1 
Query:  439 KFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVN 870
            +FACVKA+G +DA    ++ LFLD+ RV EYN++C+E++D++ LS +TKV+W+ + RY PFKARDF T VHYR LEDG ++V+NR  EH  A R  KYVR+EIL+A NIMRP+  DP+KT  +++THINPGG  DS+ GA +VN
Sbjct:   16 RFACVKAVGVVDAPVDRVFDLFLDSARVGEYNEHCREIQDIDTLSANTKVTWSASGRYGPFKARDFCTVVHYRRLEDGRLVVVNRAAEHVRAPRSDKYVRSEILLAGNIMRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVN 159
[Close]
BLAST of Ec-27_006150.1 vs. uniprot
Match: L1J651_GUITC (START domain-containing protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=L1J651_GUITC)

HSP 1 Score: 184 bits (468), Expect = 1.870e-51
Identity = 97/229 (42.36%), Postives = 137/229 (59.83%), Query Frame = 1 
Query:  241 AEMLALQAENDASVEAVLA----VIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXRGIVDEGAAAKFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALE 915
            AE+ A  AE + + + +L     V+  DGWE V  + GV V RK +                        KF CVKA+G +DA+A+D+Y+L  D+ RV EYN+ C +VRDL  LS DTKV+WA +  Y PFK RDFVT VH   L DGT ++++R  +      G  YVR E+L+A N+MRP  +DP+KT+F ++ HINPGG AD+ +GA+I N++C   PV+ +  +E
Sbjct:  195 AELAASAAEVEGTNKMLLGRLFTVLAGDGWEHVLHQDGVDVYRKRIVDLYQ----------------GGEKFYCVKAVGVIDAKAADIYELLKDSARVDEYNEECAQVRDLSALSSDTKVTWAASKTYFPFKPRDFVTRVHNTQLNDGTYVIMSRSEDVDFTDGGADYVRTEVLLAGNVMRPCPDDPNKTEFTTIAHINPGGAADTPLGAQITNRICIHGPVSFIRKIE 407
The following BLAST results are available for this feature:
BLAST of Ec-27_006150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAW9_ECTSI9.350e-213100.00START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JSI0_9PHAE9.110e-16781.71START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835YQ35_9STRA6.770e-6665.19START domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S2RES9_9STRA4.170e-6246.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3UPT8_HETAK2.280e-5845.12Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6H5J623_9PHAE2.290e-5739.02START domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LLJ0_ECTSI3.830e-5738.11START domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S1HKH9_HEMAN6.950e-5341.15Hypothetical protein n=2 Tax=Hemiselmis TaxID=7792... [more]
I2CRQ3_NANGC1.370e-5156.94Lipid transfer protein 5-like protein (Fragment) n... [more]
L1J651_GUITC1.870e-5142.36START domain-containing protein n=2 Tax=Geminigera... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5720704..5723679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.1
Seed ortholog evalue1.4e-32
Seed eggNOG ortholog2880.D7G2E9
Length987
KEGG koko:K10779
Hectar predicted targeting categoryother localisation
Gene idEc-27_006150.1
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006150Ec-27_006150Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5719263..5726458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006150.1Ec-27_006150.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5720704..5723679 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006150.1.1Ec-27_006150.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5720704..5720958 +
Ec-27_006150.1.2Ec-27_006150.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5721460..5721585 +
Ec-27_006150.1.3Ec-27_006150.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5722356..5722499 +
Ec-27_006150.1.4Ec-27_006150.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5722798..5722988 +
Ec-27_006150.1.5Ec-27_006150.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5723409..5723679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006150.1CDS:Ec-27_006150.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5720704..5720958 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006150.1 ID=Ec-27_006150.1|Name=Ec-27_006150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=329bp
MGGEATERRSPFAKLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQG
FGRRGRESLAFGNFGARKQWVKEEEGEVISAEMLALQAENDASVEAVLAV
IESDGWERVTEKSGVVVVRKFVPPPPKAPSSSSSSSRGIVDEGAAAKFAC
VKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWAC
TPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEIL
IATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNL
LVALERSANSAPVPKEEAAAAKKQKVAG*
back to top

spliced messenger RNA

>Ec-27_006150.1 ID=Ec-27_006150.1|Name=Ec-27_006150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=987bp|location=Sequence derived from alignment at chr_27:5720704..5723679+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGAGAGGCCACGGAGAGAAGAAGCCCTTTCGCCAAGCTGGCGGG
GGTTGGCGACGGGCTCAGAGCTCGCGCGCGGCGGCTGCTGGTAGCCGAGG
TGGAAGGGAGGCAGAAACATGACGCAGGGGTGCCGAGGAGGAGGCAAGGG
TTCGGCCGGAGGGGCAGGGAATCCTTGGCTTTCGGGAATTTCGGCGCGCG
AAAGCAGTGGGTCAAGGAGGAAGAAGGGGAGGTTATCAGCGCGGAAATGT
TGGCGCTCCAGGCAGAGAACGATGCGAGCGTGGAGGCGGTGTTGGCCGTC
ATCGAGTCCGACGGGTGGGAACGTGTCACCGAAAAGTCCGGCGTCGTCGT
CGTCCGGAAGTTCGTCCCACCCCCTCCCAAGGCGCCATCATCCTCCTCCT
CTTCCAGCAGAGGGATCGTCGACGAAGGAGCAGCCGCCAAGTTTGCTTGT
GTCAAGGCCATGGGGACGCTCGACGCTCGAGCCAGCGATCTGTACAAGCT
CTTCCTCGACAACGAGCGCGTGCACGAGTACAACGATAACTGCAAGGAAG
TGCGAGACCTCGAGAGGCTGTCGGACGACACCAAGGTGTCGTGGGCCTGC
ACGCCCAGGTACCGGCCGTTTAAGGCCAGGGACTTCGTGACCGCTGTCCA
CTACCGCACCCTGGAAGACGGAACGATGATGGTGCTCAACAGGCCCGTCG
AGCACCCGGCGGCAAGGCGCGGGAAGAAGTACGTTCGAGCCGAGATCCTC
ATAGCGACCAACATCATGCGGCCCAACCGCGAGGACCCCAGCAAGACCGA
CTTCATCTCGGTGACCCACATCAACCCCGGCGGCATAGCGGACTCGAGGA
TCGGGGCCAAGATAGTCAACAAGCTATGCGCCAAGGCGCCGGTGAACCTG
CTCGTCGCCCTGGAACGTTCCGCGAACTCGGCGCCCGTTCCGAAGGAGGA
AGCGGCGGCGGCCAAGAAACAGAAGGTGGCGGGGTAG
back to top

protein sequence of Ec-27_006150.1

>Ec-27_006150.1 ID=Ec-27_006150.1|Name=Ec-27_006150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=329bp
MGGEATERRSPFAKLAGVGDGLRARARRLLVAEVEGRQKHDAGVPRRRQG
FGRRGRESLAFGNFGARKQWVKEEEGEVISAEMLALQAENDASVEAVLAV
IESDGWERVTEKSGVVVVRKFVPPPPKAPSSSSSSSRGIVDEGAAAKFAC
VKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWAC
TPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEIL
IATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNL
LVALERSANSAPVPKEEAAAAKKQKVAG*
back to top

mRNA from alignment at chr_27:5720704..5723679+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006150.1 ID=Ec-27_006150.1|Name=Ec-27_006150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2976bp|location=Sequence derived from alignment at chr_27:5720704..5723679+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCGGAGAGGCCACGGAGAGAAGAAGCCCTTTCGCCAAGCTGGCGGG
GGTTGGCGACGGGCTCAGAGCTCGCGCGCGGCGGCTGCTGGTAGCCGAGG
TGGAAGGGAGGCAGAAACATGACGCAGGGGTGCCGAGGAGGAGGCAAGGG
TTCGGCCGGAGGGGCAGGGAATCCTTGGCTTTCGGGAATTTCGGCGCGCG
AAAGCAGTGGGTCAAGGAGGAAGAAGGGGAGGTTATCAGCGCGGAAATGT
TGGCGGTGCGTTTCAAGCCGGTGTGCGTGTGGGAATTGTTGTCGCAAGTG
CGCACATCGTGTTGTAGCTGTAGGCGGGGAAAGCTTGCCAAACAACTAGC
CTGGGTGGCAGTACGTACCCCGAAACGTCCCCTCCGTTCGTTTGTCAGCA
TCGCCACAACGGCACTTGGCAAAGTTTGGTTTCGTACTACGTACTGTACA
TGATGGCTTACGACCCCACGGTGAAATTAATTTTGCCGCCTTTGTTTTTT
GGGCGCATCAGGCTGAGACTTGGTGACATAGTGTAGATCAGAACTCACAG
ACAATTGATTTTGCGATCTATATCACCTTATCCACACGCTTGGTACCAAC
ATTTCCGGGTCACGACGCTACACAATAAGCCGCGGCACGAGCTGCGGTGG
GTTTGCTCTGTGCTGGTTTGGTGATCCGAGACAACGGTAGAGGGCACCGA
AAGCAGCAACAACACCCGCAATCAACGATGCCCGCATCCCTCCCCTGGCC
TCCCAGCTCCAGGCAGAGAACGATGCGAGCGTGGAGGCGGTGTTGGCCGT
CATCGAGTCCGACGGGTGGGAACGTGTCACCGAAAAGTCCGGCGTCGTCG
TCGTCCGGAAGTTCGTCCCACCCCCTCCCAAGGCATGTAGGGATGCGAGG
TCAATGGTCTAGCGACTGCGGCTTGCACGATTGTATGAGTACACCGCCCT
CCCAAGGCATGGATGTAGATAGAAGCATTATTTGTGTTGCAATATATCCG
GCAACGTGATGAATCCGCCGGTTCGGTGAGATTGTTGTGAGTTATCTGTC
GGTGGAGCTTACTCTTCGAACAACCATGGCGATGAAACACGCAGCAGTAT
TTTTTTTGTCGAACGGCATACAATAATGTCGAAAGTAAAACGTATCAAAT
GTTTTTCCATGGGCACCCCCCCACACACCTTACTCCCGGGGCCCCTTATT
TAAAGTTCGCTGTTGCATTCTTGGGGTATTGTAGGTTGTGGACGAAAGGC
ATGAACGGTAGATAACTTTACGCCTGCGTGCTTGTCATTGGTACCTCCCC
CCCCTCAATGCTCCATCATCTCGTGGTCAATGGTCTAGCAACCAAGACAT
GCAAAACGTAAGTACGCCGCCCCCCCCCTCCCCCCATCACACTTGCATAT
ACACCCTTCCCCCCGTTTCCCTGTACTGGGGCATAGGAAATGGGTTGAAA
AGGTGAGTAGTGATGTCGATAGGATAGATGGTTAGGGGAAACAATTTTGA
GCCAGCTTTGGCAAAGTAGGAAGAGACGATTGGCCGTCGGTGATCGGTCC
TGTGGAAACAACGTTCCGTCCCCTCGAGGACGCGTGGTCAATCGTCTAAC
CGCTAGGGTACGCAAAACATGAGAGTACGCCTCCCCCCGTTTCCCTGCGC
AGGCGCCATCATCCTCCTCCTCTTCCAGCAGAGGGATCGTCGACGAAGGA
GCAGCCGCCAAGTTTGCTTGTGTCAAGGCCATGGGGACGCTCGACGCTCG
AGCCAGCGATCTGTACAAGCTCTTCCTCGACAACGAGCGCGTGCACGTGA
GTAGGGGGTGCCGTGGTGTCGGAGCACGGGGGGGGGGGGGGGAAGCGTTA
CCCTTACGTGTATTCACGCGCGCGTTGCCATGTTGCCATCGATGGCGTAC
ATCGTCCTGCTGTCTCTTTTTTTGTGCTCGTGTTTCCTGACTGGCGTTAC
GCGTTGCTGCTAGACTTGTGCCAATCGCGCTCATCTTTCTGCGCCGCTGC
CACATCTCTCTCTGTTTTGTGGGCCTCCTCTCTCCCTCGCTCCGTCTATT
GTTGCTCGTCTGGATTTTGATACGACGACGCCCGGCGGGGACAGGAGTAC
AACGATAACTGCAAGGAAGTGCGAGACCTCGAGAGGCTGTCGGACGACAC
CAAGGTGTCGTGGGCCTGCACGCCCAGGTACCGGCCGTTTAAGGCCAGGG
ACTTCGTGACCGCTGTCCACTACCGCACCCTGGAAGACGGAACGATGATG
GTGCTCAACAGGCCCGTCGAGCACCCGGCGGCAAGGTGGGCCAATGGAAA
ATGTATTTTTGCCGTACGTCGACAACGCACACGTCAATCCGGGGGCGTGG
TCAGAAGGATGAGAAAGGAGGCGGTTTTGTAGCGGACGACCTCTGGCTAC
GCGCGGCGCGGGGGGGCGTTATTTGGCCTTCAAGCAGAAGCGTCAGTTTT
GCATCTGGCTGGCTGGCAGGCAGCGGGGTAGACGTGCATGTTGTGCTGGT
GCGCCTTTTTCTTTCTTTTTGCGAGAGTCAACAACCATATTTCGGACAAT
GAAGCGTAGAGGTTTCTATGCCACCCATGCTGAGGTAGTGGCGCTTTCTT
CGCCGTGAACCCTACAGCTTCTTCGCAAATAGCCATATGCACATGCATGC
GTTATTTCGCGACGATACATCACAGCAACAATGACGTCACCGAAAACATT
TACAGGCGCGGGAAGAAGTACGTTCGAGCCGAGATCCTCATAGCGACCAA
CATCATGCGGCCCAACCGCGAGGACCCCAGCAAGACCGACTTCATCTCGG
TGACCCACATCAACCCCGGCGGCATAGCGGACTCGAGGATCGGGGCCAAG
ATAGTCAACAAGCTATGCGCCAAGGCGCCGGTGAACCTGCTCGTCGCCCT
GGAACGTTCCGCGAACTCGGCGCCCGTTCCGAAGGAGGAAGCGGCGGCGG
CCAAGAAACAGAAGGTGGCGGGGTAG
back to top

Coding sequence (CDS) from alignment at chr_27:5720704..5723679+

>Ec-27_006150.1 ID=Ec-27_006150.1|Name=Ec-27_006150.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=987bp|location=Sequence derived from alignment at chr_27:5720704..5723679+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCGGAGAGGCCACGGAGAGAAGAAGCCCTTTCGCCAAGCTGGCGGG
GGTTGGCGACGGGCTCAGAGCTCGCGCGCGGCGGCTGCTGGTAGCCGAGG
TGGAAGGGAGGCAGAAACATGACGCAGGGGTGCCGAGGAGGAGGCAAGGG
TTCGGCCGGAGGGGCAGGGAATCCTTGGCTTTCGGGAATTTCGGCGCGCG
AAAGCAGTGGGTCAAGGAGGAAGAAGGGGAGGTTATCAGCGCGGAAATGT
TGGCGCTCCAGGCAGAGAACGATGCGAGCGTGGAGGCGGTGTTGGCCGTC
ATCGAGTCCGACGGGTGGGAACGTGTCACCGAAAAGTCCGGCGTCGTCGT
CGTCCGGAAGTTCGTCCCACCCCCTCCCAAGGCGCCATCATCCTCCTCCT
CTTCCAGCAGAGGGATCGTCGACGAAGGAGCAGCCGCCAAGTTTGCTTGT
GTCAAGGCCATGGGGACGCTCGACGCTCGAGCCAGCGATCTGTACAAGCT
CTTCCTCGACAACGAGCGCGTGCACGAGTACAACGATAACTGCAAGGAAG
TGCGAGACCTCGAGAGGCTGTCGGACGACACCAAGGTGTCGTGGGCCTGC
ACGCCCAGGTACCGGCCGTTTAAGGCCAGGGACTTCGTGACCGCTGTCCA
CTACCGCACCCTGGAAGACGGAACGATGATGGTGCTCAACAGGCCCGTCG
AGCACCCGGCGGCAAGGCGCGGGAAGAAGTACGTTCGAGCCGAGATCCTC
ATAGCGACCAACATCATGCGGCCCAACCGCGAGGACCCCAGCAAGACCGA
CTTCATCTCGGTGACCCACATCAACCCCGGCGGCATAGCGGACTCGAGGA
TCGGGGCCAAGATAGTCAACAAGCTATGCGCCAAGGCGCCGGTGAACCTG
CTCGTCGCCCTGGAACGTTCCGCGAACTCGGCGCCCGTTCCGAAGGAGGA
AGCGGCGGCGGCCAAGAAACAGAAGGTGGCGGGGTAG
back to top
Synonyms
The feature 'Ec-27_006150.1' has the following synonyms
Synonym
Esi0000_0067
Esi_0000_0067