Ec-27_006130.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006130.2
Unique NameEc-27_006130.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length578
Homology
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BLAST of Ec-27_006130.2 vs. uniprot
Match: A0A6H5JT04_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT04_9PHAE)

HSP 1 Score: 868 bits (2243), Expect = 3.340e-307
Identity = 458/500 (91.60%), Postives = 463/500 (92.60%), Query Frame = 2 
Query:  359 EAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRDAAADCQAGALVAGQAQRRSGGGDIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHFSACHRHRHXXXXXFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTAVRLRCGSGGSNCCSETAHVDSKACAKGAAALFVTEQQLATKAEAEVLPFSPLAERQNSAAVVSAVVSGADGSARANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSHETTAICYACSVLSRMVSFVAGPFVRFFRGLWERRRQQREQTAEGGGDREAGEGNEAAEGVVRFAPPALDSPAATPVPPSVVAA 1858
            +AFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPG+PGTTTPFGRD    C+AGALVAGQAQRRSGGGDI G RKVVPAGAGAVGSMETRE KAAAGAVRSPK GDTLHMLAPPSDIG VGRGGARG FGTARIASSDA A AAA AEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGP HS  GPHAHGENGEKHLE GELGESLGKHDHF ACHR   XXX  FHQHLSQEMKV SSWTGSAQTDAPSIGSDDDNDDTAVRLRCGSGGSNCCSETAHVDSKACAKGAAAL VTEQQLATKA AEVLP SPLAE QNSAA VS VVSGADGSARANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWI GHPSCPYCKGDLNVIPQENNSS ETTAICYACSVLS MVSFV GP VRFFRG+WERRRQQREQTAEGGGDREAGEGNEAAEGVV FAPPAL+S AATPVPPSVVAA
Sbjct:   56 QAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGSPGTTTPFGRDPGGGCRAGALVAGQAQRRSGGGDITGCRKVVPAGAGAVGSMETRESKAAAGAVRSPKIGDTLHMLAPPSDIGQVGRGGARGAFGTARIASSDAGATAAATAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPCHSADGPHAHGENGEKHLEVGELGESLGKHDHFLACHRXXXXXXRPFHQHLSQEMKVSSSWTGSAQTDAPSIGSDDDNDDTAVRLRCGSGGSNCCSETAHVDSKACAKGAAALLVTEQQLATKAGAEVLPLSPLAEHQNSAAAVSVVVSGADGSARANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWICGHPSCPYCKGDLNVIPQENNSSSETTAICYACSVLSGMVSFVTGPLVRFFRGIWERRRQQREQTAEGGGDREAGEGNEAAEGVVSFAPPALESSAATPVPPSVVAA 555
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BLAST of Ec-27_006130.2 vs. uniprot
Match: D8LAX1_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX1_ECTSI)

HSP 1 Score: 862 bits (2226), Expect = 3.660e-306
Identity = 460/531 (86.63%), Postives = 460/531 (86.63%), Query Frame = 2 
Query:  266 MVAVVSQGYLCAIFVSIPPDPKPRGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRDAAADCQAGALVAGQAQRRSGGGDIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHFSACHRHRHXXXXXFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTAVRLRCGSGGSNCCSETAHVDSKACAKGAAALFVTEQQLATKAEAEVLPFSPLAERQNSAAVVSAVVSGADGSARANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSHETTAICYACSVLSRMVSFVAGPFVRFFRGLWERRRQQREQTAEGGGDREAGEGNEAAEGVVRFAPPALDSPAATPVPPSVVAA 1858
            MVAVVSQGYLCAIFVSIPPDPKPRGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRDAAADCQAGALVAGQAQRRSGGGDIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHFSACHRHRH XXXXFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTAVRLR                                                                      ANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSHETTAICYACSVLSRMVSFVAGPFVRFFRGLWERRRQQREQTAEGGGDREAGEGNEAAEGVVRFAPPALDSPAATPVPPSVVAA
Sbjct:    1 MVAVVSQGYLCAIFVSIPPDPKPRGVTQINREAFASFPFDATASLVRRKGSGTRPPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRDAAADCQAGALVAGQAQRRSGGGDIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLAPPSDIGLVGRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAGPVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHFSACHRHRHCXXXXFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTAVRLR----------------------------------------------------------------------ANDETVVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSHETTAICYACSVLSRMVSFVAGPFVRFFRGLWERRRQQREQTAEGGGDREAGEGNEAAEGVVRFAPPALDSPAATPVPPSVVAA 461
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BLAST of Ec-27_006130.2 vs. uniprot
Match: A0A836CLU7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.840e-12
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 2 
Query: 1409 TVVRVSELPDVCAICLGQYATGEEVHVLPC--LHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSHET 1615
            T V  SEL   C ICLG Y TGE +  LPC   H++H EC+++W+ GH +CPYCK DL +  +E  S   T
Sbjct:   64 TAVATSELQ--CVICLGDYTTGESLCRLPCPFQHVYHVECINLWLDGHSTCPYCKYDLMLAAEEEQSPSAT 132
[Close]
BLAST of Ec-27_006130.2 vs. uniprot
Match: A0A8C3ZMD8_9TELE (RING-type domain-containing protein n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZMD8_9TELE)

HSP 1 Score: 72.8 bits (177), Expect = 6.230e-12
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 2 
Query: 1442 CAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDL 1576
            C ICL +Y  GEE+ VLPCLH FHAEC+D W++ +PSCP C+ D+
Sbjct:   47 CRICLCEYTAGEELRVLPCLHDFHAECVDRWLQQNPSCPICRADV 91
[Close]
BLAST of Ec-27_006130.2 vs. uniprot
Match: A0A5E4F3R2_PRUDU (RING-type E3 ubiquitin transferase n=2 Tax=Prunus TaxID=3754 RepID=A0A5E4F3R2_PRUDU)

HSP 1 Score: 73.9 bits (180), Expect = 1.350e-11
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 2 
Query: 1397 ANDETVVRVSELPD-VCAICLGQYATGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 1591
            A+ + +  V E+ D +CA+CL ++  GE + VLP C+H+FHAEC+D+W+  H +CP C+ D+   PQ
Sbjct:   73 AHHQLIPTVEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPPQ 139
[Close]
BLAST of Ec-27_006130.2 vs. uniprot
Match: A0A251NVP6_PRUPE (RING-type E3 ubiquitin transferase n=4 Tax=Prunus TaxID=3754 RepID=A0A251NVP6_PRUPE)

HSP 1 Score: 73.9 bits (180), Expect = 1.420e-11
Identity = 29/67 (43.28%), Postives = 46/67 (68.66%), Query Frame = 2 
Query: 1397 ANDETVVRVSELPD-VCAICLGQYATGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 1591
            A+ + +  V E+ D +CA+CL ++  GE + VLP C+H+FHAEC+D+W+  H +CP C+ D+   PQ
Sbjct:   75 AHHQLIPTVEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPPQ 141
[Close]
BLAST of Ec-27_006130.2 vs. uniprot
Match: A0A4Y1RQH7_PRUDU (RING-type E3 ubiquitin transferase n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RQH7_PRUDU)

HSP 1 Score: 72.8 bits (177), Expect = 1.590e-11
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 2 
Query: 1406 ETVVRVSELPD-VCAICLGQYATGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 1591
            + +  V E+ D +CA+CL ++  GE + VLP C+H+FHAEC+D+W+  H +CP C+ D+   PQ
Sbjct:   46 QLIPTVEEIKDGICAVCLCEFKDGEAIRVLPECMHLFHAECIDMWLSSHSNCPLCRTDIEPPPQ 109
[Close]
BLAST of Ec-27_006130.2 vs. uniprot
Match: UPI000C1CE394 (RING-H2 finger protein ATL8-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE394)

HSP 1 Score: 74.7 bits (182), Expect = 1.960e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 2 
Query: 1418 RVSELPDVCAICLGQYATGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNV 1582
            RV +L D CAIC+ ++A GEEV VLP C HIFH EC+D W+R H SCP C+ +L V
Sbjct:  101 RVEKLAD-CAICMAEFAAGEEVRVLPQCRHIFHVECVDTWLRSHSSCPSCRENLVV 155
[Close]
BLAST of Ec-27_006130.2 vs. uniprot
Match: D8LS07_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS07_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 3.400e-11
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 2 
Query: 1412 VVRVSELPDVCAICLGQYATGEEVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNV 1582
            V+R SEL   C++CL  Y   E V +LPC H++H EC+D+W+R H  CPYC+ D+NV
Sbjct:  312 VIRASELNASCSVCLFGYFVDEAVTLLPCGHLYHTECIDIWMRDHVDCPYCRADMNV 368
[Close]
BLAST of Ec-27_006130.2 vs. uniprot
Match: A0A1E5VXG3_9POAL (RING-type domain-containing protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VXG3_9POAL)

HSP 1 Score: 73.6 bits (179), Expect = 8.660e-11
Identity = 48/140 (34.29%), Postives = 70/140 (50.00%), Query Frame = 2 
Query: 1175 VRLRCGSGGSNCCSETAHVDSKACAKGAAALFVTEQQLATKAEAEVLPFSPLAERQNSAAVVSAVVSGADGSARANDETVVRVSELPDVCAICLGQYATGEEVHVLP-CLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQ 1591
            +RL C      C +   H +S+    GA   F+ + Q A  +   VLP  P        A V AV        +  +E   R   LP+ CA+CLG+  TGE V  LP CLH+FH +C+D W+R H +CP C+ ++  +P+
Sbjct:   96 LRLPC-----RCAARLRHRNSRGGGSGALPQFMVQGQAAGLSSIYVLPREPPVR---GGARVVAVDDLPAYEQQQQEEDAKRPDGLPE-CAVCLGEVETGEMVKRLPGCLHMFHQQCIDPWLREHSTCPVCRYNVLTVPE 226
The following BLAST results are available for this feature:
BLAST of Ec-27_006130.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JT04_9PHAE3.340e-30791.60RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LAX1_ECTSI3.660e-30686.63RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CLU7_9STRA3.840e-1247.89RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A8C3ZMD8_9TELE6.230e-1260.00RING-type domain-containing protein n=1 Tax=Dentic... [more]
A0A5E4F3R2_PRUDU1.350e-1143.28RING-type E3 ubiquitin transferase n=2 Tax=Prunus ... [more]
A0A251NVP6_PRUPE1.420e-1143.28RING-type E3 ubiquitin transferase n=4 Tax=Prunus ... [more]
A0A4Y1RQH7_PRUDU1.590e-1143.75RING-type E3 ubiquitin transferase n=1 Tax=Prunus ... [more]
UPI000C1CE3941.960e-1158.93RING-H2 finger protein ATL8-like n=1 Tax=Olea euro... [more]
D8LS07_ECTSI3.400e-1150.88RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A1E5VXG3_9POAL8.660e-1134.29RING-type domain-containing protein n=1 Tax=Dichan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5699126..5705386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score872.1
Seed ortholog evalue1.5e-250
Seed eggNOG ortholog2880.D8LAX1
Length3011
KEGG koko:K16271
Hectar predicted targeting categorysignal peptide
Gene idEc-27_006130.2
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006130Ec-27_006130Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5699126..5705386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006130.2Ec-27_006130.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5700275..5705258 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006130.2.5Ec-27_006130.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5699126..5700616 -
Ec-27_006130.2.4Ec-27_006130.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5700902..5702059 -
Ec-27_006130.2.3Ec-27_006130.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5702786..5702824 -
Ec-27_006130.2.2Ec-27_006130.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5703719..5703892 -
Ec-27_006130.2.1Ec-27_006130.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5705238..5705386 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0061303UTR:Ec-27_006130.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 5699126..5700274 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006130.2CDS:Ec-27_006130.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5700275..5700616 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0061305UTR:Ec-27_006130.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 5705259..5705386 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006130.2 ID=Ec-27_006130.2|Name=Ec-27_006130.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=578bp
MSWAAVMLFGSGLIFSTGLVWFFVQAWIFAIEAQTVWLIILLTVTTMVAV
VSQGYLCAIFVSIPPDPKPRGVTQINREAFASFPFDATASLVRRKGSGTR
PPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRDAAADCQAGALVAGQAQ
RRSGGGDIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLA
PPSDIGLVGRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAG
PVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHF
SACHRHRHCHRRHFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTAV
RLRCGSGGSNCCSETAHVDSKACAKGAAALFVTEQQLATKAEAEVLPFSP
LAERQNSAAVVSAVVSGADGSARANDETVVRVSELPDVCAICLGQYATGE
EVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSHETTAIC
YACSVLSRMVSFVAGPFVRFFRGLWERRRQQREQTAEGGGDREAGEGNEA
AEGVVRFAPPALDSPAATPVPPSVVAA*
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spliced messenger RNA

>Ec-27_006130.2 ID=Ec-27_006130.2|Name=Ec-27_006130.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3011bp|location=Sequence derived from alignment at chr_27:5699126..5705386- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTTGCTGTCTCGGAAGTCGGCTCCGCCAGTACTACTGCGGTCCCGCGTAG
CACAGGAGTGTCCCAGACCTACAATGCAACACACAAGACAAGACTAATTC
TACACAGGTTGCCGAAACAGCGGAAACCATGAGCTGGGCTGCAGTGATGC
TGTTTGGGAGCGGCCTCATTTTCTCGACCGGTCTGGTGTGGTTCTTCGTT
CAGGCCTGGATCTTCGCGATCGAAGCGCAAACCGTATGGCTCATCATTCT
CCTCACGGTCACGACCATGGTCGCGGTTGTGTCGCAGGGGTACCTGTGCG
CGATTTTCGTCTCCATCCCACCGGATCCCAAGCCCAGAGGGGTGACGCAA
ATCAACAGAGAGGCTTTCGCTTCATTCCCCTTCGACGCCACCGCCAGCCT
CGTCCGTCGGAAGGGGTCCGGCACAAGGCCACCGGTCGGCTGGGAGGTAA
AGTCTTCCCAGCAGCTCGCCGCCTCGCTTCGCCACCCCGACCCTGGAGCC
CCCGGCACCACCACACCCTTCGGCCGCGATGCCGCCGCCGATTGCCAAGC
AGGTGCCCTAGTAGCGGGCCAAGCTCAGCGACGAAGCGGCGGCGGCGACA
TCGCAGGCTTTAGAAAGGTTGTACCGGCGGGGGCGGGAGCGGTGGGAAGT
ATGGAAACCCGGGAGTGCAAGGCGGCGGCGGGGGCGGTGCGTTCGCCGAA
AAGTGGCGACACGCTGCACATGTTGGCGCCGCCGTCCGATATCGGCCTGG
TGGGTCGCGGTGGCGCGCGGGGCGTGTTTGGAACGGCAAGGATTGCGTCG
TCGGACGCCAGGGCTGCGGCGGCTGCGGCGGCGGAGGGACAATGCGTCGA
AGACGTGGTGGAGTCCGGTCACGCAGGACCGGTTCTATTGTTGGGCCGGA
CGAAGACGAAGCCGCTGTCGCCAGGGCCCTCCCACTCCACCCGCGGACCC
CACGCGCACGGCGAGAACGGGGAGAAACATCTCGAGGGGGGGGAGTTGGG
TGAGTCGCTGGGAAAGCACGACCACTTCTCAGCATGCCACAGGCATCGCC
ACTGTCACCGCCGCCATTTCCACCAGCACCTCAGCCAGGAGATGAAGGTT
TGCAGCAGCTGGACCGGGTCGGCACAAACAGACGCACCCAGCATCGGCTC
CGACGACGACAACGACGACACGGCCGTGCGGCTCAGGTGCGGCAGCGGTG
GGTCGAACTGCTGCAGCGAAACAGCCCATGTTGACAGCAAGGCTTGCGCC
AAAGGCGCAGCCGCGCTGTTTGTGACGGAGCAGCAATTGGCGACGAAGGC
GGAGGCCGAGGTACTGCCGTTTTCGCCTTTGGCGGAGCGGCAGAATTCGG
CGGCGGTTGTCTCTGCCGTCGTTTCCGGCGCCGACGGAAGCGCCAGGGCG
AACGACGAAACCGTGGTGCGCGTGAGCGAGCTGCCGGACGTGTGCGCGAT
CTGCTTGGGGCAGTACGCCACAGGGGAGGAGGTTCACGTGCTGCCCTGCC
TGCACATATTTCACGCCGAGTGCCTGGACGTCTGGATCCGCGGTCACCCG
TCCTGCCCTTACTGCAAGGGTGACCTGAACGTTATCCCGCAAGAAAACAA
TTCGTCACACGAGACGACGGCAATATGTTATGCCTGCAGCGTGCTGTCTC
GGATGGTGTCGTTCGTCGCCGGGCCCTTCGTTCGGTTTTTCCGCGGACTC
TGGGAGCGGCGGCGGCAGCAGCGAGAGCAGACGGCCGAGGGTGGCGGGGA
CAGGGAGGCGGGAGAGGGGAACGAAGCTGCCGAAGGGGTTGTTAGGTTTG
CTCCACCAGCGTTGGACTCTCCGGCAGCGACACCCGTGCCGCCATCTGTG
GTGGCAGCGTGAGATACTCGGCACACCTGTGTAAACGGGGCGCCTTTTCT
GTTTGCTCGTTCAAAGATTTCGCGATCGTTGTGATTTTTCATGTGTCCGT
TTTTGTTCCAGGCGTGTGTGTGGTGTTTACATGCGTAGAGGACGCGTGAA
GAACCCCCTGATGAAGACTCGCGTTGTGGTTGAACCTCTTTCAACAGCAT
TGCTTGCTGTTGCCTAGCTCTCTTTGGTAGACTGGACAACCGGGGAAGCG
ACTACAACCAGGGAGCGGTCGGTAGCTTAACTCATCCCCTGCCTAATCAA
TCCCAGCGGGTTGCAGCTCCCGCCATATCCCATACCTGCTATTTCGTTTC
CAAGAACAAACGTTGAGGTTCTTGTACTCAAATTCCATGGCTAATCTGCA
GCCCACCCTTGGAGTTGAACACATGCAGTTACATGGAAAACCCATCATTC
GAAGCATGGATCGAAGATAGATGTGCAAAACGTCGTAGTAGCGTGACAGT
TCGCCCTCGCATAAGTTTAAAATAGATGAACAGAAGGCCATCGTCGTAAA
CTGAGTGCGCACTACAAGTCGCGTACATGGTCAGGATACAATCCAGTCGT
CGGCCCGACAGAAGACGAAGAACCTCGTAGAGAACAATGTGGCGCAAGAT
GCTGCACTGAACCGATCGTGCCACATTGGCGGAACAAGAACCTCACACCA
GCACACCAAGGGCAAACTGAAAAACAAAACCGCCTCGATTAATATATCTG
ATAGTGGAAAACCGATGGTGGTGACATGTACGATGGTCTACGGTATATAC
TTACGACGGCAGATGCCCCAACATGCAAAGTAGACAAAGAACGGGAATTA
GTGTCACGTACAAAGGAACACAGGGATCGACGGAAACTAATTATTCACAT
ATTTCCTCGCAATTTCAAGTACCATGGATACGCTGGGAGCCAAACCACGC
TCAGACTCAGGCACCGAAGAAATCGAAGACGGAAAGACAGAAAGTAATCC
GCAAAGAAGGGTAGGTACTGCAGAGGAGGCCGCAAACATGACTTCGCCGG
TCCCCAAAATAGGACACATGGCTCAAGTAACGCTGCATGGCCTCCGGGCC
TGTGGCTCCTCCGTCCAAGCTCCGTGGCGCTTGCTGAAGATACGTATGCA
GAACTGGAGAA
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protein sequence of Ec-27_006130.2

>Ec-27_006130.2 ID=Ec-27_006130.2|Name=Ec-27_006130.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=578bp
MSWAAVMLFGSGLIFSTGLVWFFVQAWIFAIEAQTVWLIILLTVTTMVAV
VSQGYLCAIFVSIPPDPKPRGVTQINREAFASFPFDATASLVRRKGSGTR
PPVGWEVKSSQQLAASLRHPDPGAPGTTTPFGRDAAADCQAGALVAGQAQ
RRSGGGDIAGFRKVVPAGAGAVGSMETRECKAAAGAVRSPKSGDTLHMLA
PPSDIGLVGRGGARGVFGTARIASSDARAAAAAAAEGQCVEDVVESGHAG
PVLLLGRTKTKPLSPGPSHSTRGPHAHGENGEKHLEGGELGESLGKHDHF
SACHRHRHCHRRHFHQHLSQEMKVCSSWTGSAQTDAPSIGSDDDNDDTAV
RLRCGSGGSNCCSETAHVDSKACAKGAAALFVTEQQLATKAEAEVLPFSP
LAERQNSAAVVSAVVSGADGSARANDETVVRVSELPDVCAICLGQYATGE
EVHVLPCLHIFHAECLDVWIRGHPSCPYCKGDLNVIPQENNSSHETTAIC
YACSVLSRMVSFVAGPFVRFFRGLWERRRQQREQTAEGGGDREAGEGNEA
AEGVVRFAPPALDSPAATPVPPSVVAA*
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mRNA from alignment at chr_27:5699126..5705386-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006130.2 ID=Ec-27_006130.2|Name=Ec-27_006130.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=6261bp|location=Sequence derived from alignment at chr_27:5699126..5705386- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTTGCTGTCTCGGAAGTCGGCTCCGCCAGTACTACTGCGGTCCCGCGTAG
CACAGGAGTGTCCCAGACCTACAATGCAACACACAAGACAAGACTAATTC
TACACAGGTTGCCGAAACAGCGGAAACCATGAGCTGGGCTGCAGTGATGG
TGAGCGTCAGCGTGTCTCTCGGTGGCCGTTTATCCGAGTTGTTTGATCCT
CTGCAAGCACCCCAAACCTGTGTATCATCTCATATGTCCCGTGTGTGTAC
ATTTGATCCCGCCATAATTTGCACAAAGGCATACACGATCCAGCAAGTAC
CTTTGGCCCTTCCCGTCCGGGAAGGTCTTTGCTACACATGAATGATTCGA
ACTTCATATCTATTGACTCGCCTTATTCGACGGACTACCGTACATCAAGT
TTCCGTACGCCTGCCGGTTACACGCATCGACGCGTCGGACGTACGTCCAA
CTGCCCGCATGCATGCACCTCCCACCTGATGTTCATATATCCGAGCATGT
ACCCAAACCACGCAATCCTAATCCTTTAACCCGGTTGCCGTGTTCGAACA
CAAGATCATGATGCCGCGTGCAGTTGAGGTTGACATGGGCCTCTCACAAC
ATAGATGAAGTATCCAAGTCTGGAGATACTATTGTATACAGTCTACTTGT
ACTTCAGTACCAGTACAAAGCGAGTAGTTCTTTAAAAACTACAACCTACA
ATCGCTTTACCTCCAAATTCGACAAACTTTCCTTTTTTCGGCGTTTCAGC
GTTACCTTGCTCAGGCTATGCCTTCCCGATTCAATTTATTTGTGTTCAAG
TGCGTTTGGCAGGAACCTCATCGTACCTATGTAGTCTATTGTTCATGGTT
TGTAGCCTGTGGCCAAGGTGTCAACTTCTTCCCTTCCTCGAGTAGGAAGA
AGAGGTTGCCGTACAGAGGTCCGAACATTTTCTATTGTCAAGACAACAAT
AATACATCAACGCATGGAATCTGTTGGACGACTTGCGGAAGTACCATAGA
TAAGGCGTACAGCCAACCTCAAAGCCTTGATACGAGAATACGATACGGAG
TGTAACCCGCCCGCCAATTTATCGGCATGGGTAAGGCCGGGTACATCTAC
AATGATTGCCCTGTACGTATCGTCGGTAATTATCACGCCTGTTGAAGACC
AAGGCTACTTGGCTCTGCTTGTTTGTTGCTTTGTTTCCAGCACGTTTGAC
GGCTACTACACGCCAAGGAATGTAAGCGTCATTTTGTACTTGGAAGCGTT
CGCTACAGCGCATACCACAAAATGCAACCAGGAATGAAAAGACTAGACTG
AATAGTCCATAATATGGAGCAAGCGTATCAAGATGGGATAGGTGACCTAT
ACGGCACATCGAAACAGGTCGACCCAGGTGATGAACTGACGACATGCTTC
TGCCTCCTTTTTCTCCTGATCCAAACGTCGTTCCATGGGGTATGGCACAC
TTTGCACGGACATCCACGACGACGACAACAACAACAAATAAAAGCTGTTT
GGGAGCGGCCTCATTTTCTCGACCGGTCTGGTGTGGTTCTTCGTTCAGGC
CTGGATCTTCGCGATCGAAGCGCAAACCGTATGGCTCATCATTCTCCTCA
CGGTCACGACCATGGTCGCGGTTGTGTCGCAGGGGTACCTGTGCGCGATT
TTCGTCTCCATCCCACCGGTGAGTGAGTGCTTTCGAAGGCACAAACAGAT
AAGTGATTGCTGATTTTCTGTCCAAACCCCCACTACCATGATCGACGATT
GAATAACTGGAACACGGTGGAAGCTGCTGGCAGAGAACCTGCGTGAGATT
AGTTTGGAGTCCTAGACGTAGAACACGGAGGGGAATGCTGACACACTACG
AACACCTTTTGGAACGTTGCGTGAAAAAACAAGCGCAAGGATTTTGAAAA
AGCGAGTGCCGTCAGCGTTGGTGATCAACACCACGTAAGTTAATCACACG
CACATAGAAATAAGTGAGTTGGCTCGGCGTTACAAGCAAACACATGCTCG
CGCACTTTCCCTTTCGCACGACCAAACGCTACAGTCAGGTGAAGAGGACG
ACCTCGTAGTTATACTGATGAGCCTTCACGATTCTCAGGCAACTGGTCGC
GTTGTTTCTTATGTGAGAGCGCTGCACCGTAGTGTTAAACCTGGCCTTTA
GCTTTAGTCTCCATGCGCATGACGTTCTACCAAGTCGATGTACAGCAGGC
TAACTCTTGTTTAGGGGTGGACATACATGTAAAGAAGGGGTACATTCTAA
GATCCCTTTTGGACGGGATGTGCACAGTTTGCAGAAGATTTACAATGGTT
TTGCGATATTCGTTTCACGATAAAGTTTGGGGTCTACCGCCAATAACCCT
TTCCTGAATTTTTATCGTGCCAATGTGCGGCCGCTGGCATGCATCGGATT
TTGGCGGAGATGCTGACTGTTCTTGAACCGTTGCGTGTAGACTGAAACAC
CCTCTATCCGACCCCGCCTCCGCCTAGTACAAACCTCTTGGAGTCCGTTC
AACGCGACAATTAATTAACATGACACCCTAACTCCCCCCCTGTCGTTTTC
GTGCTTAATCAGGATCCCAAGCCCAGAGGGGTGACGCAAATCAACAGAGA
GGTACGTGAAGAAGTGCTGTAGGATGTCAGGCGAAGAGCATCAGAGGGCC
TAACACTCCCTAGCGAGAACTCAGATTGTTTTCAGACATTACATACTCAG
CGACATGCAATATACTAACCTTGCAATTTAGACTTATGACACTCCGTATT
CTTCGCATGGGTTTTCCAAAAACCCTGGAGCTGCTAGGGTATCTATCGCC
CGTATTGCACAACAAACACGAGCCCAAGTACACGGGGTCCCAGAACCGCG
CTGTAGCTGGGTGTAGGACAGGTGACTCTGTGCACAATCAATCTTGGGCT
GCACAGCTCTACGATGAAAAACACAGGGGTGGCTAAGTTTCGAGCCAAAC
AAGGCGCACATGGGTCCTAACCAGGGTTAGGATTTGCGAATGAGCCTCGT
GCACTTTATAAGTAATCAGAATTGGACCCCTTTTTGATGTTTCTCCTTGA
GCACTCTACTTCGCAGCAATAGCTAAACCACATGCAAAATGTTTTCGTCC
AACGTGTGTCATTCTTGGTAAGAGGGTCCGCGCGGCCTCCGCACACCACC
ACCACCAACGGTGCAAATGGGAGGCAGAAGTGCCCAATGAACTACGGGAC
AAAACGAAGTGTTGGGCGACAAAGCAGGCTAATCCCTCATTTCCGTGAGC
CAATCCGTTCATGCGACCTACCCCACTCTCCATCTGTTGCCACCGCCGCT
GAACCCCCCTCCCTCCCCCGCTCGCAGGCTTTCGCTTCATTCCCCTTCGA
CGCCACCGCCAGCCTCGTCCGTCGGAAGGGGTCCGGCACAAGGCCACCGG
TCGGCTGGGAGGTAAAGTCTTCCCAGCAGCTCGCCGCCTCGCTTCGCCAC
CCCGACCCTGGAGCCCCCGGCACCACCACACCCTTCGGCCGCGATGCCGC
CGCCGATTGCCAAGCAGGTGCCCTAGTAGCGGGCCAAGCTCAGCGACGAA
GCGGCGGCGGCGACATCGCAGGCTTTAGAAAGGTTGTACCGGCGGGGGCG
GGAGCGGTGGGAAGTATGGAAACCCGGGAGTGCAAGGCGGCGGCGGGGGC
GGTGCGTTCGCCGAAAAGTGGCGACACGCTGCACATGTTGGCGCCGCCGT
CCGATATCGGCCTGGTGGGTCGCGGTGGCGCGCGGGGCGTGTTTGGAACG
GCAAGGATTGCGTCGTCGGACGCCAGGGCTGCGGCGGCTGCGGCGGCGGA
GGGACAATGCGTCGAAGACGTGGTGGAGTCCGGTCACGCAGGACCGGTTC
TATTGTTGGGCCGGACGAAGACGAAGCCGCTGTCGCCAGGGCCCTCCCAC
TCCACCCGCGGACCCCACGCGCACGGCGAGAACGGGGAGAAACATCTCGA
GGGGGGGGAGTTGGGTGAGTCGCTGGGAAAGCACGACCACTTCTCAGCAT
GCCACAGGCATCGCCACTGTCACCGCCGCCATTTCCACCAGCACCTCAGC
CAGGAGATGAAGGTTTGCAGCAGCTGGACCGGGTCGGCACAAACAGACGC
ACCCAGCATCGGCTCCGACGACGACAACGACGACACGGCCGTGCGGCTCA
GGTGCGGCAGCGGTGGGTCGAACTGCTGCAGCGAAACAGCCCATGTTGAC
AGCAAGGCTTGCGCCAAAGGCGCAGCCGCGCTGTTTGTGACGGAGCAGCA
ATTGGCGACGAAGGCGGAGGCCGAGGTACTGCCGTTTTCGCCTTTGGCGG
AGCGGCAGAATTCGGCGGCGGTTGTCTCTGCCGTCGTTTCCGGCGCCGAC
GGAAGCGCCAGGGCGAACGACGAAACCGTGGTGCGCGTGAGCGAGCTGCC
GGACGTGTGCGCGATCTGCTTGGGGCAGTACGCCACAGGGGAGGAGGTTC
ACGTGCTGCCCTGCCTGCACATATTTCACGCCGAGGTGATTGCTTGGCTC
TCTCTGCCGGCAAGAGGAATCTTGCGTGACGTTCAGATCGCAGCAGAACA
TATCTACTGCTGTTGCAGAGACAGTTGCAGCTATAGGCTTCAACCGCTTT
GTGGTCTCTGCAACTCACGGGAGTCGTGACCTTAGCTCGCTTTCATTAAA
CTTGTTGTTGGTCAATCGTCTGTACGACCCTATAACCGTTCTTCTGGTGA
CGACGCCACTAATGCACCAAATCTCGCTGCGCCCCCCCCCCCCCCATCAA
TGGACCGATCGAATCATCAGTGCCTGGACGTCTGGATCCGCGGTCACCCG
TCCTGCCCTTACTGCAAGGGTGACCTGAACGTTATCCCGCAAGAAAACAA
TTCGTCACACGAGACGACGGCAATATGTTATGCCTGCAGCGTGCTGTCTC
GGATGGTGTCGTTCGTCGCCGGGCCCTTCGTTCGGTTTTTCCGCGGACTC
TGGGAGCGGCGGCGGCAGCAGCGAGAGCAGACGGCCGAGGGTGGCGGGGA
CAGGGAGGCGGGAGAGGGGAACGAAGCTGCCGAAGGGGTTGTTAGGTTTG
CTCCACCAGCGTTGGACTCTCCGGCAGCGACACCCGTGCCGCCATCTGTG
GTGGCAGCGTGAGATACTCGGCACACCTGTGTAAACGGGGCGCCTTTTCT
GTTTGCTCGTTCAAAGATTTCGCGATCGTTGTGATTTTTCATGTGTCCGT
TTTTGTTCCAGGCGTGTGTGTGGTGTTTACATGCGTAGAGGACGCGTGAA
GAACCCCCTGATGAAGACTCGCGTTGTGGTTGAACCTCTTTCAACAGCAT
TGCTTGCTGTTGCCTAGCTCTCTTTGGTAGACTGGACAACCGGGGAAGCG
ACTACAACCAGGGAGCGGTCGGTAGCTTAACTCATCCCCTGCCTAATCAA
TCCCAGCGGGTTGCAGCTCCCGCCATATCCCATACCTGCTATTTCGTTTC
CAAGAACAAACGTTGAGGTTCTTGTACTCAAATTCCATGGCTAATCTGCA
GCCCACCCTTGGAGTTGAACACATGCAGTTACATGGAAAACCCATCATTC
GAAGCATGGATCGAAGATAGATGTGCAAAACGTCGTAGTAGCGTGACAGT
TCGCCCTCGCATAAGTTTAAAATAGATGAACAGAAGGCCATCGTCGTAAA
CTGAGTGCGCACTACAAGTCGCGTACATGGTCAGGATACAATCCAGTCGT
CGGCCCGACAGAAGACGAAGAACCTCGTAGAGAACAATGTGGCGCAAGAT
GCTGCACTGAACCGATCGTGCCACATTGGCGGAACAAGAACCTCACACCA
GCACACCAAGGGCAAACTGAAAAACAAAACCGCCTCGATTAATATATCTG
ATAGTGGAAAACCGATGGTGGTGACATGTACGATGGTCTACGGTATATAC
TTACGACGGCAGATGCCCCAACATGCAAAGTAGACAAAGAACGGGAATTA
GTGTCACGTACAAAGGAACACAGGGATCGACGGAAACTAATTATTCACAT
ATTTCCTCGCAATTTCAAGTACCATGGATACGCTGGGAGCCAAACCACGC
TCAGACTCAGGCACCGAAGAAATCGAAGACGGAAAGACAGAAAGTAATCC
GCAAAGAAGGGTAGGTACTGCAGAGGAGGCCGCAAACATGACTTCGCCGG
TCCCCAAAATAGGACACATGGCTCAAGTAACGCTGCATGGCCTCCGGGCC
TGTGGCTCCTCCGTCCAAGCTCCGTGGCGCTTGCTGAAGATACGTATGCA
GAACTGGAGAA
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Coding sequence (CDS) from alignment at chr_27:5699126..5705386-

>Ec-27_006130.2 ID=Ec-27_006130.2|Name=Ec-27_006130.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1734bp|location=Sequence derived from alignment at chr_27:5699126..5705386- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGCTGGGCTGCAGTGATGCTGTTTGGGAGCGGCCTCATTTTCTCGAC
CGGTCTGGTGTGGTTCTTCGTTCAGGCCTGGATCTTCGCGATCGAAGCGC
AAACCGTATGGCTCATCATTCTCCTCACGGTCACGACCATGGTCGCGGTT
GTGTCGCAGGGGTACCTGTGCGCGATTTTCGTCTCCATCCCACCGGATCC
CAAGCCCAGAGGGGTGACGCAAATCAACAGAGAGGCTTTCGCTTCATTCC
CCTTCGACGCCACCGCCAGCCTCGTCCGTCGGAAGGGGTCCGGCACAAGG
CCACCGGTCGGCTGGGAGGTAAAGTCTTCCCAGCAGCTCGCCGCCTCGCT
TCGCCACCCCGACCCTGGAGCCCCCGGCACCACCACACCCTTCGGCCGCG
ATGCCGCCGCCGATTGCCAAGCAGGTGCCCTAGTAGCGGGCCAAGCTCAG
CGACGAAGCGGCGGCGGCGACATCGCAGGCTTTAGAAAGGTTGTACCGGC
GGGGGCGGGAGCGGTGGGAAGTATGGAAACCCGGGAGTGCAAGGCGGCGG
CGGGGGCGGTGCGTTCGCCGAAAAGTGGCGACACGCTGCACATGTTGGCG
CCGCCGTCCGATATCGGCCTGGTGGGTCGCGGTGGCGCGCGGGGCGTGTT
TGGAACGGCAAGGATTGCGTCGTCGGACGCCAGGGCTGCGGCGGCTGCGG
CGGCGGAGGGACAATGCGTCGAAGACGTGGTGGAGTCCGGTCACGCAGGA
CCGGTTCTATTGTTGGGCCGGACGAAGACGAAGCCGCTGTCGCCAGGGCC
CTCCCACTCCACCCGCGGACCCCACGCGCACGGCGAGAACGGGGAGAAAC
ATCTCGAGGGGGGGGAGTTGGGTGAGTCGCTGGGAAAGCACGACCACTTC
TCAGCATGCCACAGGCATCGCCACTGTCACCGCCGCCATTTCCACCAGCA
CCTCAGCCAGGAGATGAAGGTTTGCAGCAGCTGGACCGGGTCGGCACAAA
CAGACGCACCCAGCATCGGCTCCGACGACGACAACGACGACACGGCCGTG
CGGCTCAGGTGCGGCAGCGGTGGGTCGAACTGCTGCAGCGAAACAGCCCA
TGTTGACAGCAAGGCTTGCGCCAAAGGCGCAGCCGCGCTGTTTGTGACGG
AGCAGCAATTGGCGACGAAGGCGGAGGCCGAGGTACTGCCGTTTTCGCCT
TTGGCGGAGCGGCAGAATTCGGCGGCGGTTGTCTCTGCCGTCGTTTCCGG
CGCCGACGGAAGCGCCAGGGCGAACGACGAAACCGTGGTGCGCGTGAGCG
AGCTGCCGGACGTGTGCGCGATCTGCTTGGGGCAGTACGCCACAGGGGAG
GAGGTTCACGTGCTGCCCTGCCTGCACATATTTCACGCCGAGTGCCTGGA
CGTCTGGATCCGCGGTCACCCGTCCTGCCCTTACTGCAAGGGTGACCTGA
ACGTTATCCCGCAAGAAAACAATTCGTCACACGAGACGACGGCAATATGT
TATGCCTGCAGCGTGCTGTCTCGGATGGTGTCGTTCGTCGCCGGGCCCTT
CGTTCGGTTTTTCCGCGGACTCTGGGAGCGGCGGCGGCAGCAGCGAGAGC
AGACGGCCGAGGGTGGCGGGGACAGGGAGGCGGGAGAGGGGAACGAAGCT
GCCGAAGGGGTTGTTAGGTTTGCTCCACCAGCGTTGGACTCTCCGGCAGC
GACACCCGTGCCGCCATCTGTGGTGGCAGCGTGA
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Synonyms
The feature 'Ec-27_006130.2' has the following synonyms
Synonym
Esi0000_0070
Esi_0000_0070