Ec-27_006110.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006110.1
Unique NameEc-27_006110.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length222
Homology
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BLAST of Ec-27_006110.1 vs. uniprot
Match: D8LAX3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX3_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 4.920e-153
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 1 
Query:    1 MRQAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGTRRGKTSTHEQQRASGGSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVVRECRAVHLDEAAILNKIYEFL 663
            MRQAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGTRRGKTSTHEQQRASGGSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVVRECRAVHLDEAAILNKIYEFL
Sbjct:    1 MRQAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGTRRGKTSTHEQQRASGGSRSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVVRECRAVHLDEAAILNKIYEFL 221
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BLAST of Ec-27_006110.1 vs. uniprot
Match: A0A6H5JYH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYH9_9PHAE)

HSP 1 Score: 341 bits (875), Expect = 3.420e-117
Identity = 182/213 (85.45%), Postives = 184/213 (86.38%), Query Frame = 1 
Query:   73 MDPHTRLPGYTCSTMLGVTQV---------------WFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEAERRRAXXRECRRLVVGLAVSQRRSDPGTRRGKTSTHEQQRASGGS-RSGMSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVVRECRAVHLDEAAILNKIYEFL 663
            MDPHTRLPGYTCSTMLGVTQV               WFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKE      XX ECRRLVVGLAVSQRRSDPGTRRGKT THEQQRASGGS RSGMSRSSSRTWSLPPLT+A HLKGGEEDQG SSGGG RAPCHGGAVAAP  VRECRAVHLDEAAILNK+YEFL
Sbjct:    1 MDPHTRLPGYTCSTMLGVTQVIDGSHQATSDLAPDVWFTAHHVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAKEXXXXXXXXXECRRLVVGLAVSQRRSDPGTRRGKTFTHEQQRASGGSSRSGMSRSSSRTWSLPPLTDATHLKGGEEDQGVSSGGGWRAPCHGGAVAAPPAVRECRAVHLDEAAILNKVYEFL 213
The following BLAST results are available for this feature:
BLAST of Ec-27_006110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAX3_ECTSI4.920e-153100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYH9_9PHAE3.420e-11785.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5688898..5691670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length666
Hectar predicted targeting categoryother localisation
Gene idEc-27_006110.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006110Ec-27_006110Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5688898..5691670 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006110.1.1Ec-27_006110.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5688898..5689029 +
Ec-27_006110.1.2Ec-27_006110.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5690818..5690891 +
Ec-27_006110.1.3Ec-27_006110.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5691211..5691670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006110.1CDS:Ec-27_006110.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5688898..5689029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006110.1Ec-27_006110.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5688898..5691670 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006110.1 ID=Ec-27_006110.1|Name=Ec-27_006110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=222bp
MRQAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAH
HVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAK
EAERRRARRRECRRLVVGLAVSQRRSDPGTRRGKTSTHEQQRASGGSRSG
MSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVV
RECRAVHLDEAAILNKIYEFL*
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spliced messenger RNA

>Ec-27_006110.1 ID=Ec-27_006110.1|Name=Ec-27_006110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=666bp|location=Sequence derived from alignment at chr_27:5688898..5691670+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACAAGCTGGCAGCGCCGGCCGTGTCCCCGATCCCAGCGAGGTGTT
TCAGACACGAAGAGGGGGAGCGATGGACCCGCACACACGGCTACCGGGCT
ACACGTGCTCGACGATGCTGGGCGTCACGCAGGTGTGGTTCACAGCACAT
CACGTGGGCCACGTCCTGAAAACCCTGCGATCGGGCCGGTTGGACGACCT
TCACAGGAGAATGAAGCGCAACCCACACGTGCTGGACGCCCGCGTTTGCC
GGGCGGTCATCTGGTGGAGCATTCTTGCGGAGGCGATGGAGGCCGCGAAG
GAGGCTGAGCGGCGGCGAGCCAGGCGGCGAGAATGCCGCCGGTTGGTGGT
CGGGCTCGCCGTCTCGCAGCGGCGGAGCGACCCCGGCACTCGACGAGGCA
AAACCAGCACGCACGAACAGCAACGAGCATCGGGTGGGTCCCGATCGGGC
ATGTCCCGCTCGTCCTCTCGCACGTGGTCACTCCCACCATTAACGGAAGC
GATTCACCTCAAGGGCGGCGAGGAGGACCAAGGGTTTTCCAGCGGTGGCG
GAGGGCGTGCTCCCTGCCACGGGGGGGCGGTGGCGGCGCCGTCGGTGGTT
CGGGAGTGTCGCGCGGTTCACCTTGATGAGGCGGCTATTCTCAATAAAAT
CTACGAGTTTTTGTGA
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protein sequence of Ec-27_006110.1

>Ec-27_006110.1 ID=Ec-27_006110.1|Name=Ec-27_006110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=222bp
MRQAGSAGRVPDPSEVFQTRRGGAMDPHTRLPGYTCSTMLGVTQVWFTAH
HVGHVLKTLRSGRLDDLHRRMKRNPHVLDARVCRAVIWWSILAEAMEAAK
EAERRRARRRECRRLVVGLAVSQRRSDPGTRRGKTSTHEQQRASGGSRSG
MSRSSSRTWSLPPLTEAIHLKGGEEDQGFSSGGGGRAPCHGGAVAAPSVV
RECRAVHLDEAAILNKIYEFL*
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mRNA from alignment at chr_27:5688898..5691670+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006110.1 ID=Ec-27_006110.1|Name=Ec-27_006110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2773bp|location=Sequence derived from alignment at chr_27:5688898..5691670+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGACAAGCTGGCAGCGCCGGCCGTGTCCCCGATCCCAGCGAGGTGTT
TCAGACACGAAGAGGGGGAGCGATGGACCCGCACACACGGCTACCGGGCT
ACACGTGCTCGACGATGCTGGGCGTCACGCAGGTGATTGATGGCTCACAC
CAAGCGAGAACTGACGCCGCACCCCGTATAGCTTGAAGGGAGCATGTGCG
TCCCTGTACAACACGTCCTGCACACACGCTGTCACAGCAGCCCCCACCGC
ATCAAAACTCGATCCTTCGCGTATCCGTTACACAGCAAGTTACGCAGGTT
CCGAGCACGACTGCGACTGCTTGTATGCACATGATGATGTTCTTTTGGGT
GTCTGCGGAAAGGGTGGTCGGCGACGCAGAGACTCGGACCTGCAGCTTGA
AAAGTCGAGAGTCGAGAGGCATGCCGACAGAAGGTCACACTGCTGCTGCT
GCTGCTGCTGTGGTTTTGACAGTTTGGACGCGGAAGACACACATTTTTCG
TAATTTATTGTTTTAAGGCAGCAAGAGTCTGCACCAAAGGACTGGCCTCT
CCTCTTCGACAGCAGTCTCTTGAATGTATTGGTCTCTATGTACAGCAGTC
GTACAGCAGTAGTGAGGAGTTAAATACCTCCTGCAGGATGGTGCTGTACG
ACAAGACCGACGACGATGGCATAGACTTAGTGCATCGCGGTTTTCTTCTG
ATCATGACGATTCCGTTCCTTCGCGCACGACGTTACATGTTGATCTGATC
CGCCCATTAGTTCAACCTCGCAAAAAGCAGGCGGGGATTTTATTATGTCG
GCCGATATTCAACGCTCCCTCGCTTGATGTGTCGAAAAGCGGACGAAAAT
GCATCACTTTCCGCAGTTGAAGCAGTCTACTGTATGTAAAGATAGCGCCA
CAACGATGTGACAATAGGTTGAATATGCTGCCACTTGGTGATGGACAACA
GGAGAAGACGGTTAATTTTACCGCGTAGACATGTACAAGGTAGAGTTGAA
GCTCGAGCCCCTTGATCATCTTACTTCATGACATGATCGCTGCACTAGCG
GGCGCTGCTAGAAGCACTGCTGTGGGCCGATGCTTAAGATCTCATCTTGT
CGCCAACATTGAGCACAGGTTACTGCTGTACTCTGTTTGCATATCGGCAG
GGCTTAATTTCGTGTGGTGCTAGAGGCTGGGCCCAGTTGCTTGGCATTCT
CTCAAATTACAAAAACCTGAACCTCCGGTTCGTAAAACTTGCATCCTCGC
GCTACTGCAAGAAGAACAGGATTGGTATTGATACCTTGGCAAGTGCACAC
GTGCCGAAGGTTTGGATGCTAATGGTGCTAACATAGGACAGGCAGAACAA
GTTATGTGGGGAGTTGGAGGACGAGGTGTTGCAGAAAAGGACTGAGTTCC
AGCGGTTTCGCATGGACACACGTACAAGGAGGTGCCCAAAAAATATGTAT
TCCCTCGGTAGCGGCGACGAGAGTTGTGCCACCTAGCCAAGCCGTTTGTT
CCACAAGACGCCGATTGCGAGTGCAAGTATCGACAAAAAAGACCCCTCTC
CTCAAGCCCCATGCGAGAAACAAACCGCCACCGCGAAATACTACGACATT
GGAGAAAATTGTAGGAGACCAAAAGTCGCCACAGAGCCAAGAATAATACT
CCAAGATCGGTCGGTAACGGCACCAGGCGATGACACGGATGCAAGGGACA
AGGGCATCTCCAGTCAGTTATTGAGGCACACGCGTGGCGAGCGCGAGAAT
TCCGGGGGCTGCTCTACAAGTATGTGGTGTAGGCAAGGGCCGATGCGAGG
TCAATGGCCAAACGGCAAAGAAAAATCTACAGTCGCGTGAACCCCCCCCC
CCCCCCCCTCTGTGTGTGCTCGCCGCAACTGTTTGTACCTGGGCCGGAAC
TCTACAATTGCTGCTGTCAGGTGTGGTTCACAGCACATCACGTGGGCCAC
GTCCTGAAAACCCTGCGATCGGGCCGGTTGGACGACCTTCACAGGTAGGT
GCAGCTGTATGAAAATATGAACCATTATGAACCATTAAATAAAGAGGAAG
TATGTCACAGAGGAAGTACATACCATGACGATTTTCCGCAACCCCTCTGA
GTTACTTTGTGCTGCGAGCCGGTTGGGCTGCATCCTTTACCACCCGCCAA
TGCTCATCGCCCAAAACCACGACTTGCCCACGACATCCGCAGGAAACCTC
ACAGGCAGTTAGAATAGAATCTACGTTCGCAAGCATCCAATTATCTCGAG
AAGGCTACGCCCTCTCGACGGCCTATTCAACCCCCCCCGCGCGCCCCCCG
TCCTGTCCCGCAGGAGAATGAAGCGCAACCCACACGTGCTGGACGCCCGC
GTTTGCCGGGCGGTCATCTGGTGGAGCATTCTTGCGGAGGCGATGGAGGC
CGCGAAGGAGGCTGAGCGGCGGCGAGCCAGGCGGCGAGAATGCCGCCGGT
TGGTGGTCGGGCTCGCCGTCTCGCAGCGGCGGAGCGACCCCGGCACTCGA
CGAGGCAAAACCAGCACGCACGAACAGCAACGAGCATCGGGTGGGTCCCG
ATCGGGCATGTCCCGCTCGTCCTCTCGCACGTGGTCACTCCCACCATTAA
CGGAAGCGATTCACCTCAAGGGCGGCGAGGAGGACCAAGGGTTTTCCAGC
GGTGGCGGAGGGCGTGCTCCCTGCCACGGGGGGGCGGTGGCGGCGCCGTC
GGTGGTTCGGGAGTGTCGCGCGGTTCACCTTGATGAGGCGGCTATTCTCA
ATAAAATCTACGAGTTTTTGTGA
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Coding sequence (CDS) from alignment at chr_27:5688898..5691670+

>Ec-27_006110.1 ID=Ec-27_006110.1|Name=Ec-27_006110.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=666bp|location=Sequence derived from alignment at chr_27:5688898..5691670+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGACAAGCTGGCAGCGCCGGCCGTGTCCCCGATCCCAGCGAGGTGTT
TCAGACACGAAGAGGGGGAGCGATGGACCCGCACACACGGCTACCGGGCT
ACACGTGCTCGACGATGCTGGGCGTCACGCAGGTGTGGTTCACAGCACAT
CACGTGGGCCACGTCCTGAAAACCCTGCGATCGGGCCGGTTGGACGACCT
TCACAGGAGAATGAAGCGCAACCCACACGTGCTGGACGCCCGCGTTTGCC
GGGCGGTCATCTGGTGGAGCATTCTTGCGGAGGCGATGGAGGCCGCGAAG
GAGGCTGAGCGGCGGCGAGCCAGGCGGCGAGAATGCCGCCGGTTGGTGGT
CGGGCTCGCCGTCTCGCAGCGGCGGAGCGACCCCGGCACTCGACGAGGCA
AAACCAGCACGCACGAACAGCAACGAGCATCGGGTGGGTCCCGATCGGGC
ATGTCCCGCTCGTCCTCTCGCACGTGGTCACTCCCACCATTAACGGAAGC
GATTCACCTCAAGGGCGGCGAGGAGGACCAAGGGTTTTCCAGCGGTGGCG
GAGGGCGTGCTCCCTGCCACGGGGGGGCGGTGGCGGCGCCGTCGGTGGTT
CGGGAGTGTCGCGCGGTTCACCTTGATGAGGCGGCTATTCTCAATAAAAT
CTACGAGTTTTTGTGA
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Synonyms
The feature 'Ec-27_006110.1' has the following synonyms
Synonym
Esi0000_0073
Esi_0000_0073