Ec-27_006090.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006090.1
Unique NameEc-27_006090.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length460
Homology
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BLAST of Ec-27_006090.1 vs. uniprot
Match: D8LAX4_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAX4_ECTSI)

HSP 1 Score: 652 bits (1681), Expect = 5.590e-232
Identity = 459/459 (100.00%), Postives = 459/459 (100.00%), Query Frame = 1 
Query:    1 MAEGADAVSAASATATIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED 1377
            MAEGADAVSAASATATIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED
Sbjct:    1 MAEGADAVSAASATATIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATMARMAQNPAVMQGXXXXXXXXXXXXXXXXXXXXMQSVMARPGGLAQAFEAIQNNPAMXXXXXXXXXXPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEGGGEAGEEGKEMTEDELIAEAIRRSMED 459
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BLAST of Ec-27_006090.1 vs. uniprot
Match: A0A7S2SMK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SMK3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.090e-20
Identity = 79/235 (33.62%), Postives = 127/235 (54.04%), Query Frame = 1 
Query:   46 TIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEP--KRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVL----APGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL 732
            T+ VK TS ++   +++++ + +V   K AI+++  V+P  +R+I +G+IL KDDQ L   K+  G TV++QV     A GA+P                       T  P A  A    + + +      ++ +  A+  +S  P    R  L TL KVIDNI  +P E+KYR+++ ANA F+RKVG++PGG  C+R +GF + G+ + + +LAPS  AW+ L + R  +Q  L
Sbjct:    7 TVKVKRTSGEQMV-EMTVAPDLSVQAFKEAIQAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPS---------------------GTQAPVAAAAPMPPTAAAMAGTTAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTD-GEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217
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BLAST of Ec-27_006090.1 vs. uniprot
Match: A0A7S2SNT8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNT8_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.670e-19
Identity = 79/235 (33.62%), Postives = 127/235 (54.04%), Query Frame = 1 
Query:   46 TIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQFDVEP--KRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVL----APGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRAL 732
            T+ VK TS ++   +++++ + +V   K AI+++  V+P  +R+I +G+IL KDDQ L   K+  G TV++QV     A GA+P                       T  P A  A    + + +      ++ +  A+  +S  P    R  L TL KVIDNI  +P E+KYR+++ ANA F+RKVG++PGG  C+R +GF + G+ + + +LAPS  AW+ L + R  +Q  L
Sbjct:    7 TVKVKRTSGEQMV-EMTVAPDLSVQAFKEAIQAKLGVDPAAQRLIHKGKIL-KDDQGLDVYKVATGETVLLQVTQRPAAAGATPS---------------------GTQAPVAAAAPMPPTAAAMAGTTAPTTGIQAALEELSSNPPDALRLGLETLLKVIDNIIQNPNEDKYRRLRPANATFNRKVGSLPGGLRCVREMGFTD-GEEEGTLILAPSTEAWHHLNSCRRLVQEKL 217
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BLAST of Ec-27_006090.1 vs. uniprot
Match: A0A836CLK8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLK8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-14
Identity = 67/234 (28.63%), Postives = 92/234 (39.32%), Query Frame = 1 
Query:   49 IGVKFTSSDKAAGQVSI---SLEGTVGELKGAIRSQFDVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATL 741
            + VKFT+    +G   I       T+ +LK AI  Q     KRIIFQGR+L+KD+ TL + K++DG T+                                                                                      V DNI  HP EEKYR IK++N  F+ +VG VPGG A ++ALGF +     ++W+L PS  AW  L  GR  +Q  L++L
Sbjct:  131 VNVKFTTGGDGSGGTLILPSQANTTIAQLKSAITEQLGKATKRIIFQGRVLSKDEATLAEMKVQDGQTI-------------------------------------------------------------------------------------HVADNIINHPLEEKYRSIKKSNKSFAARVGNVPGGAAAIQALGFTDSPTVPDTWVLLPSADAWPTLRQGRDLLQSTLSSL 279
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BLAST of Ec-27_006090.1 vs. uniprot
Match: A0A7S2EXK5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EXK5_TRICV)

HSP 1 Score: 74.3 bits (181), Expect = 1.450e-10
Identity = 48/111 (43.24%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:  421 SSPVGQAVATV-SRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEH---GDA-QESWLLAPSEAAWNVLTAGRVDIQRALA 735
            S P+  A+ T+ SR      +  L TL K++ N+K+HP EEKYR++K+ NA F R++G +PGG   M A GF VE    GDA +E + L PS  AW  L A +  +  ALA
Sbjct:  174 SDPLPAALGTIRSRCTPAQYKTALQTLDKLLGNVKSHPMEEKYRRVKKGNAAFQRRLGGLPGGHDAMLAAGFTVEQECSGDACEEIYSLTPSADAWPKLVAAKDAVATALA 284
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BLAST of Ec-27_006090.1 vs. uniprot
Match: A0A448ZQX1_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQX1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 5.760e-10
Identity = 51/148 (34.46%), Postives = 73/148 (49.32%), Query Frame = 1 
Query:  421 SSPVGQAVATV-SRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF---VEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPG--------APAAAGASTGGFAGGLGVLPPPGAFPQ 828
            S P+G A+  + S  P  V    + TL KV+ NI +HP EEKYR++K+ N  F +++G + GG  CM A GF   V+ G+  E + L  +  +WN L   +  ++ A+A            AP  AG   GG        PPPG  P 
Sbjct:  145 SDPLGLALERLRSGNPPSVYATAVGTLGKVLGNIVSHPMEEKYRRVKKQNPAFRKRLGGLAGGHDCMLACGFRVEVDEGENAEVYKLHATADSWNALVEAKTRVEEAVAKAAAGDRQQPVQAPGPAGLLPGGG------FPPPGGLPN 286
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BLAST of Ec-27_006090.1 vs. uniprot
Match: A0A1Z5JL72_FISSO (Ubiquitin-like domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JL72_FISSO)

HSP 1 Score: 68.9 bits (167), Expect = 5.510e-9
Identity = 75/233 (32.19%), Postives = 122/233 (52.36%), Query Frame = 1 
Query:   40 TATIGVKFTSSDKAAGQVSISLEGTVGELK----GAIRSQFDVEPKRIIFQGRILNKDDQTL--QDCKLKDGLTVVVQVLAPGASPXXXXXXXXXXXXXXXXXXXXSPATPNPAAGLAAATQSMSGLXXXAVSSSPVGQAVATVSRQPAGVARE----CLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEHGDAQESWLLAPSEAAWNVLTA 705
            T T+ +  T +D A  +V +++E +V   +     A  ++  +E  ++IF+GR+++ +D  L   + KL+DG   V+  +   A           XXXXXXXXX  S +   PA+ L+      + +   A ++ P+  A+AT+    AG+++      + TL K++ NI   P EEKYR +K++NA F RK+G   GG+  M+A GF VE  +  E + L  S  AW  L A
Sbjct:    3 TLTVHLTITGADGAP-KVPLTIEPSVTSTQLRQQAAEATKIPIESLKLIFRGRLISNNDTQLAVSEFKLEDGS--VLHCMGKPAPAASSAEGGVSXXXXXXXXXLASASAAQPASRLSFNAFPSASVSAPAPTADPLQAALATLR---AGLSQADYLTAVQTLEKILSNIVTQPMEEKYRSLKKSNAAFQRKLGGKRGGDELMKAAGFIVEIREGVEYYALQASAEAWPKLVA 229
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BLAST of Ec-27_006090.1 vs. uniprot
Match: A0A7S4EG88_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG88_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 9.690e-9
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  454 SRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGF-VEHGDAQESWLLAPSEAAWNVL 699
            S  P  V    + TL KV+ NI A+P EEKYR++KR N  F +++G + GG ACM A GF VE   A+E + L  S   WN L
Sbjct:  193 SNNPPSVYATAVATLEKVLTNIVANPMEEKYRRVKRQNPAFRKRLGGLGGGHACMLACGFTVEQQAAEEVYQLRASADRWNNL 275
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BLAST of Ec-27_006090.1 vs. uniprot
Match: A0A7S2IH61_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IH61_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.260e-8
Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 1 
Query:  487 LTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEA-AWNVLTA------GRVDI-QRALATLPGAPAAAGASTGGFAGGLGVLPPPGAFPQAGFGG------GTGGGGMPD------MATMARMAQNPAVMQG 918
            L TL+K++ NI +HP EEKYR++K+ NA F R++G +  G   M A+GFVE  +  E + +  + A AW  L        G V++ +R +     AP    A        +G + PP      GFGG      G GGGG+P          +A M  NP  ++G
Sbjct:   65 LQTLSKLLTNITSHPMEEKYRRVKKGNAAFQRRLGGLEKGHEVMLAVGFVEKSEEGEDYYVMEASAEAWPALVKNAEVVKGEVEVVKRRVEGAGSAPTPQPA--------VGTMAPP--MGAGGFGGSXXXXSGMGGGGLPQNIPPGMQDAVANMMSNPEALRG 218
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BLAST of Ec-27_006090.1 vs. uniprot
Match: A0A7S3VBJ8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBJ8_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.570e-8
Identity = 34/80 (42.50%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:  487 LTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVPGGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQR 726
            +TTL K++ NI   P EEKYRK+KRANA F +++G + G    M  LGF  +   Q  ++L PS  AW  L  G+ ++ R
Sbjct:   46 ITTLQKILGNIVTKPQEEKYRKVKRANAAFQKRLGRLNGAHDVMTMLGFSVND--QNEYVLVPSPEAWPKLVEGKKEVDR 123
The following BLAST results are available for this feature:
BLAST of Ec-27_006090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LAX4_ECTSI5.590e-232100.00Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
A0A7S2SMK3_9STRA3.090e-2033.62Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SNT8_9STRA3.670e-1933.62Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CLK8_9STRA1.200e-1428.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2EXK5_TRICV1.450e-1043.24Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A448ZQX1_9STRA5.760e-1034.46Ubiquitin-like domain-containing protein n=1 Tax=P... [more]
A0A1Z5JL72_FISSO5.510e-932.19Ubiquitin-like domain-containing protein n=1 Tax=F... [more]
A0A7S4EG88_9STRA9.690e-945.78Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2IH61_9STRA2.260e-833.54Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3VBJ8_9STRA3.570e-842.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5682844..5686434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score657.1
Seed ortholog evalue5.9e-186
Seed eggNOG ortholog2880.D8LAX4
Length1380
KEGG koko:K04523
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Gene idEc-27_006090.1
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016043,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0030433,GO:0030474,GO:0030674,GO:0031023,GO:0032446,GO:0033554,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051300,GO:0051603,GO:0051716,GO:0060090,GO:0070647,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0010@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03051,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006090Ec-27_006090Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5682844..5686434 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006090.1.1Ec-27_006090.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5682844..5682983 +
Ec-27_006090.1.2Ec-27_006090.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5684678..5685122 +
Ec-27_006090.1.3Ec-27_006090.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5685414..5685812 +
Ec-27_006090.1.4Ec-27_006090.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5686039..5686434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006090.1CDS:Ec-27_006090.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5682844..5682983 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006090.1Ec-27_006090.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5682844..5686434 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006090.1 ID=Ec-27_006090.1|Name=Ec-27_006090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=460bp
MAEGADAVSAASATATIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQF
DVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPSPSPAAA
AAATAPAAAAAAASPATPNPAAGLAAATQSMSGLGLGAVSSSPVGQAVAT
VSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVP
GGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGA
PAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATMARMAQN
PAVMQGMMNDPSVQAMMRSNPQMAAAMQSVMARPGGLAQAFEAIQNNPAM
AQMAQQMMQDPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPPAGGQA
GTPAAPSPAAGAAPSPPPAAAPAAAVPPASEGGGEAGEEGKEMTEDELIA
EAIRRSMED*
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spliced messenger RNA

>Ec-27_006090.1 ID=Ec-27_006090.1|Name=Ec-27_006090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1380bp|location=Sequence derived from alignment at chr_27:5682844..5686434+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGGGAGCAGATGCGGTGTCAGCGGCATCAGCTACGGCAACCAT
CGGGGTGAAATTCACGTCTTCGGACAAAGCTGCTGGGCAGGTTTCGATAT
CTCTAGAGGGCACAGTTGGCGAGCTTAAGGGAGCTATCAGGTCGCAGTTC
GACGTCGAGCCGAAGCGCATCATCTTCCAGGGGCGCATCCTCAACAAGGA
CGACCAGACCCTCCAAGATTGCAAGCTCAAGGATGGCCTTACCGTGGTTG
TCCAAGTGTTAGCGCCTGGGGCATCACCCTCGCCGTCGCCTGCCGCAGCT
GCCGCAGCGACGGCGCCTGCCGCCGCCGCGGCGGCGGCGTCCCCTGCCAC
GCCGAATCCCGCAGCCGGCCTTGCGGCCGCCACGCAATCGATGAGCGGGT
TGGGTTTAGGCGCGGTTAGCAGCAGCCCGGTGGGGCAGGCCGTGGCGACG
GTGTCTCGGCAGCCCGCGGGCGTGGCGCGCGAGTGCCTAACGACTCTTAC
CAAGGTGATCGACAACATCAAGGCACACCCGACCGAGGAGAAGTACCGCA
AGATCAAGAGAGCAAACGCGGGGTTCAGCCGGAAGGTTGGAGCGGTGCCG
GGCGGGGAGGCTTGCATGCGAGCCCTCGGATTCGTCGAGCACGGGGACGC
GCAAGAGAGCTGGCTCCTTGCCCCCAGCGAAGCGGCCTGGAACGTTCTTA
CCGCCGGCCGCGTAGACATCCAGAGAGCTCTGGCAACCCTCCCGGGAGCG
CCGGCGGCTGCTGGTGCGTCCACCGGCGGCTTCGCGGGGGGGTTGGGGGT
GCTCCCTCCCCCCGGGGCGTTTCCCCAGGCCGGGTTCGGGGGCGGGACGG
GGGGAGGGGGGATGCCGGACATGGCAACGATGGCGAGGATGGCGCAGAAC
CCGGCGGTGATGCAGGGGATGATGAACGACCCTTCGGTGCAGGCCATGAT
GAGGAGTAACCCGCAGATGGCGGCGGCGATGCAGTCCGTGATGGCCCGAC
CGGGCGGACTGGCTCAGGCATTCGAAGCGATTCAAAACAACCCGGCGATG
GCTCAGATGGCCCAACAGATGATGCAGGACCCTACCGCTCTTCAGCGAGC
CGCCCAGATGGATTTCGGAGGCGCCCTCGCGGCGGGAATAAACGCCGCAC
CACCCAACGCCGCACAGGGTTTCCAAGCACCCCCTGCAGGCGGACAGGCG
GGGACTCCCGCGGCACCATCCCCTGCTGCTGGTGCTGCTCCCTCGCCACC
ACCTGCAGCAGCACCAGCGGCGGCGGTGCCCCCGGCCTCCGAAGGGGGCG
GGGAAGCGGGGGAGGAGGGAAAGGAGATGACGGAAGACGAGCTGATTGCG
GAGGCGATTCGAAGATCTATGGAGGACTAG
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protein sequence of Ec-27_006090.1

>Ec-27_006090.1 ID=Ec-27_006090.1|Name=Ec-27_006090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=460bp
MAEGADAVSAASATATIGVKFTSSDKAAGQVSISLEGTVGELKGAIRSQF
DVEPKRIIFQGRILNKDDQTLQDCKLKDGLTVVVQVLAPGASPSPSPAAA
AAATAPAAAAAAASPATPNPAAGLAAATQSMSGLGLGAVSSSPVGQAVAT
VSRQPAGVARECLTTLTKVIDNIKAHPTEEKYRKIKRANAGFSRKVGAVP
GGEACMRALGFVEHGDAQESWLLAPSEAAWNVLTAGRVDIQRALATLPGA
PAAAGASTGGFAGGLGVLPPPGAFPQAGFGGGTGGGGMPDMATMARMAQN
PAVMQGMMNDPSVQAMMRSNPQMAAAMQSVMARPGGLAQAFEAIQNNPAM
AQMAQQMMQDPTALQRAAQMDFGGALAAGINAAPPNAAQGFQAPPAGGQA
GTPAAPSPAAGAAPSPPPAAAPAAAVPPASEGGGEAGEEGKEMTEDELIA
EAIRRSMED*
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mRNA from alignment at chr_27:5682844..5686434+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006090.1 ID=Ec-27_006090.1|Name=Ec-27_006090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3591bp|location=Sequence derived from alignment at chr_27:5682844..5686434+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGAGGGAGCAGATGCGGTGTCAGCGGCATCAGCTACGGCAACCAT
CGGGGTGAAATTCACGTCTTCGGACAAAGCTGCTGGGCAGGTTTCGATAT
CTCTAGAGGGCACAGTTGGCGAGCTTAAGGGAGCTATCAGGTACGGCTTA
AGCCTCTCGGCTCACAAGATAGAAATGCAATACTGTAACGTATGCATAGC
GGGGAGTAGAAGTGCAGTACAGGGTGCCCACGTGCCCCCTTCTCGAAGGT
TCGCCCAGCATCTATCTGCATGTACTGCTGTATACGGAGTAGTACTGCTG
TAGCGCAAGGCGGGTGTCGCGTGACACAGATGGAATACTCAACTGGTGTC
ATGATCTGAATAGTAGCGGGTGCACGGTATGCAGCCTGCTGCCAAATTCC
TTGGCAATACTATCCCACTTGCTCGTGCTGTGTACAATAAAACTGCTTGA
ATCTCTGCGTAGACCCAGTTTGAGACGAGCCATTTCCTCGTGTTTTAGTA
CAGACGTGCAGGGCTACGAGGAAAGCATCCCACAGAGTGAGTGCGTGTTT
GGCACAAGCACTATTGTAGTCGTAGGGGCATCTACGGCTGGAAGTTTGCA
GCGGTGTCTTTTGGTAGTCGGTTTTGCCAAGAGGCAACTAGTGTACTATC
GTCTTTCCCGTGCCTTTCCAACGGCATATTAGAGGGAATCCACGTGTTGT
TGAAATGACGTGAAAGATTGACATTTCAGGAAGTTTTGACGTGACGAGGT
TACGCCGCGTTTTTGGAGGCAAAAACTCTGACGGCGAAATTTTGGTGAAA
AAGCGTCAAAACTTAAACCGACGCGAAGAGATTGACACTTCAAATGTCGC
CAGACTGTGGCTCACACACGCTTGCTCTGTGCTCTGTTACCATCACCAAA
TCACGAAAGGAGCGCGGTCAGCAGCGAACACATTGGCCATGCCTACTGAT
TGCTCCTAGCGGCCCTGCACACACACGTCTCGGCAGTTCTCACGGCGGCC
CAGTGGCCGGACTCGCGTGTTCGGCGCGCGCGTTCGGTAGATGAGCCATC
GCGATTGCGCACGGGCTTTCAGCAGCAAAAAGGGGCATAGGCAGTAATCG
GGGGAGTCCCGCCCTCGAAGGGAGCACATATAGAGGATTAAGGGAGGGTA
CACGGACTTGGCCAGTCAGTAGGTGCATTTCGCCCGCCCCCTCACGGGGT
TTGGTGCTCTGCTGCCGCAGTGACATCGGTACACAGCAGTACAGCGAGCA
GCTGCCTCACTCAGCAACGGCAGTTTGACGCCTGGGAAGTCGCCGCGGCA
AAAGAGGGAAGTTCGGCGGGATGAGGCGGAGGGGTACACCTAGTCTCCTG
GGAGCCTGGGAGTGTGAGTCTTCGCTTCAGCATTTCGTCCCTGGGTGGCA
TCCCGAACCAACCCGGGGTCGTGAACACATGACCGGCGTTTAACGCATCA
ACTCTACATCACCATTTTTTTTTTTCCCTCCCACGTGCCAACGGGCACAC
GCGGTGCGAATTTTTTTCCCGTCAAAACCCTCAACCGGTACTTTATGTTG
GCATCAATCCTCAAAGGTCAAAATTCCGCGTCAATCCATAGTGGATACCC
TATATTGTACACCCGCTGGGTACTCTCCGAGAGCTTACAAGCAAAGACGT
TCATTCACGTCTGCTTTTTACTCAACACGCGTCGTATTCAAGACAAACTG
GACAACATCAAACTACCCAGCGTTCGTAAGCATGTGAATCGTGGCAAGCA
ACCAGAAAACACTGATTTGATCGATACGCGTCGTCCGGATGAGAAACCTC
CTCTTGGCCTCTCGCCCCTCCGCCGACCCCACAGGTCGCAGTTCGACGTC
GAGCCGAAGCGCATCATCTTCCAGGGGCGCATCCTCAACAAGGACGACCA
GACCCTCCAAGATTGCAAGCTCAAGGATGGCCTTACCGTGGTTGTCCAAG
TGTTAGCGCCTGGGGCATCACCCTCGCCGTCGCCTGCCGCAGCTGCCGCA
GCGACGGCGCCTGCCGCCGCCGCGGCGGCGGCGTCCCCTGCCACGCCGAA
TCCCGCAGCCGGCCTTGCGGCCGCCACGCAATCGATGAGCGGGTTGGGTT
TAGGCGCGGTTAGCAGCAGCCCGGTGGGGCAGGCCGTGGCGACGGTGTCT
CGGCAGCCCGCGGGCGTGGCGCGCGAGTGCCTAACGACTCTTACCAAGGT
GATCGACAACATCAAGGCACACCCGACCGAGGAGAAGTACCGCAAGATCA
AGAGAGCAAACGCGGGGTTCAGCCGGAAGGTGGGGTGGGGGCGCGCGGTC
TCAAGCGTTATCTTACGTTTCGTGTGGAGATGCTGCCGTGCCGGTTGGGC
GCACGTGATCGTTGGTTTGCTGTGTTGGGTATTGATGTAATAGTACGTCC
GCATCACCACCGTTTGGATTGTTTTGCTTCTGTACTTCGGCGAGACGCTT
CCGACGACTTTGCGGGGAGTCAACCGCGTCTCTTTTCACCGTCGCCATCC
TGCTCGATGTAATAGTACATCACCTTTCCCGTTGCATGCTACGCCCCTCC
TCTCCGTACGTTATGTACAGGTTGGAGCGGTGCCGGGCGGGGAGGCTTGC
ATGCGAGCCCTCGGATTCGTCGAGCACGGGGACGCGCAAGAGAGCTGGCT
CCTTGCCCCCAGCGAAGCGGCCTGGAACGTTCTTACCGCCGGCCGCGTAG
ACATCCAGAGAGCTCTGGCAACCCTCCCGGGAGCGCCGGCGGCTGCTGGT
GCGTCCACCGGCGGCTTCGCGGGGGGGTTGGGGGTGCTCCCTCCCCCCGG
GGCGTTTCCCCAGGCCGGGTTCGGGGGCGGGACGGGGGGAGGGGGGATGC
CGGACATGGCAACGATGGCGAGGATGGCGCAGAACCCGGCGGTGATGCAG
GGGATGATGAACGACCCTTCGGTGCAGGCCATGATGAGGAGTAACCCGCA
GATGGCGGCGGCGATGCAGGTGTGTTTTTATGGGTGTGATGTTTTCAGCA
AGGATGGGGGTCGTGTATGTATGTAGCAGGTCACGGCTTTTGGCGACATC
CGGGTATTTGCTAGGTTCGCTTCCTGCTATTGCTGCACCCCTGTATTGGT
CTCGCGCTTGTTTTTTTTTTGCCTCTACTGCATGTAATCTTCACGCTCCG
AAACCTCTTGTCCGTTCGCCCCTTCGCCCGCTACACTTTCCGCAGTCCGT
GATGGCCCGACCGGGCGGACTGGCTCAGGCATTCGAAGCGATTCAAAACA
ACCCGGCGATGGCTCAGATGGCCCAACAGATGATGCAGGACCCTACCGCT
CTTCAGCGAGCCGCCCAGATGGATTTCGGAGGCGCCCTCGCGGCGGGAAT
AAACGCCGCACCACCCAACGCCGCACAGGGTTTCCAAGCACCCCCTGCAG
GCGGACAGGCGGGGACTCCCGCGGCACCATCCCCTGCTGCTGGTGCTGCT
CCCTCGCCACCACCTGCAGCAGCACCAGCGGCGGCGGTGCCCCCGGCCTC
CGAAGGGGGCGGGGAAGCGGGGGAGGAGGGAAAGGAGATGACGGAAGACG
AGCTGATTGCGGAGGCGATTCGAAGATCTATGGAGGACTAG
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Coding sequence (CDS) from alignment at chr_27:5682844..5686434+

>Ec-27_006090.1 ID=Ec-27_006090.1|Name=Ec-27_006090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1380bp|location=Sequence derived from alignment at chr_27:5682844..5686434+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGAGGGAGCAGATGCGGTGTCAGCGGCATCAGCTACGGCAACCAT
CGGGGTGAAATTCACGTCTTCGGACAAAGCTGCTGGGCAGGTTTCGATAT
CTCTAGAGGGCACAGTTGGCGAGCTTAAGGGAGCTATCAGGTCGCAGTTC
GACGTCGAGCCGAAGCGCATCATCTTCCAGGGGCGCATCCTCAACAAGGA
CGACCAGACCCTCCAAGATTGCAAGCTCAAGGATGGCCTTACCGTGGTTG
TCCAAGTGTTAGCGCCTGGGGCATCACCCTCGCCGTCGCCTGCCGCAGCT
GCCGCAGCGACGGCGCCTGCCGCCGCCGCGGCGGCGGCGTCCCCTGCCAC
GCCGAATCCCGCAGCCGGCCTTGCGGCCGCCACGCAATCGATGAGCGGGT
TGGGTTTAGGCGCGGTTAGCAGCAGCCCGGTGGGGCAGGCCGTGGCGACG
GTGTCTCGGCAGCCCGCGGGCGTGGCGCGCGAGTGCCTAACGACTCTTAC
CAAGGTGATCGACAACATCAAGGCACACCCGACCGAGGAGAAGTACCGCA
AGATCAAGAGAGCAAACGCGGGGTTCAGCCGGAAGGTTGGAGCGGTGCCG
GGCGGGGAGGCTTGCATGCGAGCCCTCGGATTCGTCGAGCACGGGGACGC
GCAAGAGAGCTGGCTCCTTGCCCCCAGCGAAGCGGCCTGGAACGTTCTTA
CCGCCGGCCGCGTAGACATCCAGAGAGCTCTGGCAACCCTCCCGGGAGCG
CCGGCGGCTGCTGGTGCGTCCACCGGCGGCTTCGCGGGGGGGTTGGGGGT
GCTCCCTCCCCCCGGGGCGTTTCCCCAGGCCGGGTTCGGGGGCGGGACGG
GGGGAGGGGGGATGCCGGACATGGCAACGATGGCGAGGATGGCGCAGAAC
CCGGCGGTGATGCAGGGGATGATGAACGACCCTTCGGTGCAGGCCATGAT
GAGGAGTAACCCGCAGATGGCGGCGGCGATGCAGTCCGTGATGGCCCGAC
CGGGCGGACTGGCTCAGGCATTCGAAGCGATTCAAAACAACCCGGCGATG
GCTCAGATGGCCCAACAGATGATGCAGGACCCTACCGCTCTTCAGCGAGC
CGCCCAGATGGATTTCGGAGGCGCCCTCGCGGCGGGAATAAACGCCGCAC
CACCCAACGCCGCACAGGGTTTCCAAGCACCCCCTGCAGGCGGACAGGCG
GGGACTCCCGCGGCACCATCCCCTGCTGCTGGTGCTGCTCCCTCGCCACC
ACCTGCAGCAGCACCAGCGGCGGCGGTGCCCCCGGCCTCCGAAGGGGGCG
GGGAAGCGGGGGAGGAGGGAAAGGAGATGACGGAAGACGAGCTGATTGCG
GAGGCGATTCGAAGATCTATGGAGGACTAG
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Synonyms
The feature 'Ec-27_006090.1' has the following synonyms
Synonym
Esi0000_0074
Esi_0000_0074