Ec-27_006050.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006050.1
Unique NameEc-27_006050.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length554
Homology
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BLAST of Ec-27_006050.1 vs. uniprot
Match: D8LAX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAX8_ECTSI)

HSP 1 Score: 952 bits (2462), Expect = 0.000e+0
Identity = 500/542 (92.25%), Postives = 500/542 (92.25%), Query Frame = 1 
Query:   34 MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVPXXXXMAQPTPAAGPDRFTIEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGVGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQRR 1659
            MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE                                          VYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVPXXXXMAQPTPAAGPDRFTIEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGVGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQRR
Sbjct:    1 MGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE------------------------------------------VYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVPXXXXMAQPTPAAGPDRFTIEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGVGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQRR 500
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BLAST of Ec-27_006050.1 vs. uniprot
Match: A0A6H5JPA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA7_9PHAE)

HSP 1 Score: 890 bits (2300), Expect = 0.000e+0
Identity = 500/555 (90.09%), Postives = 509/555 (91.71%), Query Frame = 1 
Query:    1 MMVRGDPTAVCMGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXX--AVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRVGGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTRREATSHGVPXXXXMAQPTPAAGPDRFTIEGADRRRYEDTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGWGVGGPAGVPPTVMFGNEWGRKREWRRTGYTDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFRQRR 1659
            MMVRG PTAV MGAVAG EAA +RPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXX  AV SVAD+TIDDHPSVYHKIPTALLLGGCARG PEDLLLA+R LSDRLGDPGCVETRLV FRLEGHISAEEFAGRLGECRGQASPAAIAALC AVESAVSDN RISTPTVDVFVRENLFPDAISSSQERLAAAA DE+GLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELP LSLEELSRRNVCRFA TGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASG VHSQ SPPRRR          GNGSWE+NTRRRVGGGG ADTSA+SGGGIG SEGVVRGRDGAWDNRGGS TWFHD+AS RT RREATSH VP    MA+P PAAGPDRFT+ GADRRRYE TGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTG G GGP GVPPTVMFGNEWGRKREWRRTGYTDDDIDP MGSCFFRTPANSTGVLRRSDLGEG GADLEEMELVRRIKS RQRR
Sbjct:  260 MMVRGGPTAVRMGAVAGPEAAASRPALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVRSVADVTIDDHPSVYHKIPTALLLGGCARGCPEDLLLARRSLSDRLGDPGCVETRLVAFRLEGHISAEEFAGRLGECRGQASPAAIAALCWAVESAVSDNGRISTPTVDVFVRENLFPDAISSSQERLAAAARDEEGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPILSLEELSRRNVCRFACTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGRVHSQPSPPRRR----------GNGSWEKNTRRRVGGGGRADTSAHSGGGIGSSEGVVRGRDGAWDNRGGSETWFHDQASGRTMRREATSHSVPPPPPMARPIPAAGPDRFTL-GADRRRYEYTGAPLGLAQEWTPRGGTGAGGSSRRRDHSDTGGGAGGPEGVPPTVMFGNEWGRKREWRRTGYTDDDIDPEMGSCFFRTPANSTGVLRRSDLGEGTGADLEEMELVRRIKSLRQRR 803
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BLAST of Ec-27_006050.1 vs. uniprot
Match: A0A835Z5Q0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5Q0_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.550e-54
Identity = 130/304 (42.76%), Postives = 168/304 (55.26%), Query Frame = 1 
Query:   79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGR-LGECR------GQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQSSP 969
            LL+TIGPQCAGKT+ L AL      A                             + D+ IDDHP VY+K+PTA  L   +    +D+LL  + +S+R+ D   V   LV  RLEG ++A+EF  + L          G+     IAA    VE+AV+  +R+ TPTVD+FV    +P  +  S  RL    +   G VAWGNTNT+++DYR ALE A+   RPVR+LRWGHELP + L +L  R++ RFA TGRYV   A+  AL RV+ LYA T GGDPA L  AAGFQM A   V + S P
Sbjct:   94 LLITIGPQCAGKTTTLLALGQSLGGAR----------------------------ICDVAIDDHPDVYYKLPTACALDPDSITPQQDVLLFDKTVSERMADYTVVGKCLVAKRLEGLLTADEFREQWLSSVEFYPYPDGEVEELWIAA----VEAAVAAGLRMETPTVDLFVPNGHYPRGVRDSNRRLRQECSRHPGPVAWGNTNTKSKDYREALECAQAVNRPVRYLRWGHELPAVPLRDLFARDLRRFAATGRYVPPQAVAAALRRVEHLYARTDGGDPALLTAAAGFQMGAGARVRAVSRP 365
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BLAST of Ec-27_006050.1 vs. uniprot
Match: A0A835YGB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGB3_9STRA)

HSP 1 Score: 181 bits (459), Expect = 4.630e-47
Identity = 119/300 (39.67%), Postives = 159/300 (53.00%), Query Frame = 1 
Query:   79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIA------ALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDPARLALAAGFQMDASGGVHSQ 960
            LL+TIGPQCAGKT+ LR +                                    V D+ ID+HP VY+++PTA +L   +  + ED+ +  R LSDRL   G     LV  RLEG +S+ +F     E +  A P  +A          +VE+AV++ VR+  PTVD+F+ E   P  +      L        G VAWGNTNT+ARDY  AL  A+   RPV F+R+GHE+P +S+ EL  RN+ RFA TGR++    +  A  RV  LYA T GG+PARLA AAGF MD  G V ++
Sbjct:   71 LLITIGPQCAGKTTTLRKM-----------------------------------GVFDVAIDEHPDVYYELPTAYILDPTST-TLEDVTIFGRRLSDRLQYTGVYANMLVAQRLEGLLSSAKFEA---EWKAIAGPYLLADRDVDRIFLESVEAAVAEGVRLYAPTVDLFLPEGHAPKGMREHSVVLRYECHRRRGAVAWGNTNTRARDYAAALATAQECTRPVHFVRYGHEIPAISIRELFGRNLRRFAATGRFIPPQTMWAARQRVKHLYARTGGGEPARLAAAAGFIMDDEGRVRAE 331
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BLAST of Ec-27_006050.1 vs. uniprot
Match: W7TBP9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TBP9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.690e-15
Identity = 87/298 (29.19%), Postives = 121/298 (40.60%), Query Frame = 1 
Query:   73 PALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPE-------DLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRL---------------------GECRGQASP---AAIAALCRAVESAVSDNVRISTPTV---------DVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFAYTGRYVETAAI 843
            P+LL+T+GPQCAGKT+LL+ L     +                            P + D+ IDD   +Y  +P  L L G              D L+  R LS R  D   VE+RLV   L G    E     L                       C  +        + AL +A  + ++   ++ T             +F+ + L P AI  S +RL  +     G VAWGNTN++ARD++ A+  A + GR V F+RWG EL   +  EEL  RNV R    G+YV    I
Sbjct:   87 PSLLITVGPQCAGKTTLLKHLNESRPSF--------------------------APPLVDVAIDDQAGLYVPLPMPLFLEGGRXXXXXXXXXXSLDKLIKGRTLSSRCDDSATVESRLVLGYLHGMWEIENVEQALRALTSXXXXXXXXXXXXXXXXXXCPSEEDEWITLLLHALAKA-RATIATTTKVDTVATWSPPAASHYQLFLPD-LLPQAIRRSYQRLTRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVLFIRWGKELGKEVGKEELVLRNVWRAYREGKYVPVRTI 355
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BLAST of Ec-27_006050.1 vs. uniprot
Match: A0A4D9D5F8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5F8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.080e-11
Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:  580 NLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHEL-PFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAG 891
            +L P AI  S +RL+ +     G VAWGNTN++ARD++ A+  A + GR VRFLRWG EL   +  EEL  RNV R    G+YV   AI  AL R   L    AG
Sbjct:  102 DLLPQAIRRSYQRLSRSLCGP-GPVAWGNTNSKARDFKEAILLAGKAGRRVRFLRWGKELGKEVGKEELILRNVWRAYREGKYVPVRAISAALERTKVLLDGRAG 205
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BLAST of Ec-27_006050.1 vs. uniprot
Match: A0A7S2IEC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEC1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.000e-9
Identity = 86/338 (25.44%), Postives = 126/338 (37.28%), Query Frame = 1 
Query:   73 PALLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPE---DLLLAQR----PLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAA------------------------------LCRAVESAVSDN---------------------------VRISTPT-------VDVFVRENLF-------PDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHE-----------LPFLSLEELSRRNVCRFAYTG 819
            P + +TIGPQCAGKT+LL  L                                  P++ DITIDD   VY KIPT+  L      SP+   D  L Q+     LS R+ D    E RLV  RL   I A EF   L + +     A +                                     +   ++N                           ++  TPT       V +F++E +F       P A+ +S  +L+  +  +   VAWGNTNT+ R+Y+ AL+ A  +  PV F+ +  +           LP L+++ L +RN+ R   TG
Sbjct:  107 PPIYITIGPQCAGKTTLLSTL----------------------------------PNLTDITIDDQEGVYIKIPTSYFLTNSPPPSPKQEPDPFLQQKILGKSLSHRIYDESNTEMRLVLQRLHNVIDATEFENLLLKDKRMEYEALLQEEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYRTNNNKHTHQKRQDQIHKLQTELTTLTHLLTTLQHPTPTTTPLPNEVSLFIQEAIFRPRTPTTPSALDTSITQLSTLS--QHHPVAWGNTNTRPREYKTALQAASTSSNPVHFIMYDSQSLLLPSETELTLPKLNIQTLLQRNIKRLLTTG 408
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BLAST of Ec-27_006050.1 vs. uniprot
Match: A0A0L0D2W0_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D2W0_THETB)

HSP 1 Score: 58.5 bits (140), Expect = 8.190e-6
Identity = 75/282 (26.60%), Postives = 115/282 (40.78%), Query Frame = 1 
Query:   79 LLVTIGPQCAGKTSLLRALAAKSEAAXXXXXXXXXXXXXXXXXXXXXXXXXAVPSVADITIDDHPSVYHKIPTALLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFAGRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAISSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWGHELPFLSLEELSRRNVCRFAYTGRYVETAAI-ENALARVDKLYASTAGGDPARLALAA 921
            L++T+GP CAGK+++L    AK E                             P+  D+ IDD P +Y +IP A L             L +   +DR  D    E   +  RLE  ++  + + R    R  A   AI  + R          R+++    +  R  L   A++ +Q  L  A      LVAWGNTNT+      A+  A+  G  +  +     +  +  +EL +R+V R   TG+ V   AI ++A+A    L  +    D A LA AA
Sbjct:   20 LVITVGPPCAGKSTVL----AKRE-----------------------------PAPLDVCIDDSPGLYARIPWADLPATSQAAIVRAAALLEGGSNDRDDD----EEDALAARLEATVAIRDDSERRACARALAR--AIGYVRRKYPRLAEQEARLASEAQVLQTR--LMRKAVAWAQTALGEAMAAGVPLVAWGNTNTKMPAIAHAVALADEHGYAIEVV----NMTDVDFDELVKRSVLRMLKTGKVVPVEAIYKSAVAAQRSLVETGLVFDAAALAEAA 256
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BLAST of Ec-27_006050.1 vs. uniprot
Match: A0A7S1Z518_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z518_TRICV)

HSP 1 Score: 53.1 bits (126), Expect = 3.540e-5
Identity = 40/94 (42.55%), Postives = 49/94 (52.13%), Query Frame = 1 
Query:  661 GNTNTQARDYRGALEQAERTGRPVRFLRW--GHEL------------------PFLS---LEELSRRNVCRFAYTGRYVETAAIENALARVDKL 873
            GNTNT+ R+Y  ALE AE +GRPVRFL    G EL                   FL+   LE L  R++ R   TGRYV + AI  A+ R D+L
Sbjct:    1 GNTNTRPREYVTALEAAEASGRPVRFLPHMRGDELGIRLEGGXXXXXXXXXAEDFLAPVDLETLLHRSIKRLVETGRYVPSRAIGEAVVRCDQL 94
The following BLAST results are available for this feature:
BLAST of Ec-27_006050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LAX8_ECTSI0.000e+092.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPA7_9PHAE0.000e+090.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5Q0_9STRA1.550e-5442.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YGB3_9STRA4.630e-4739.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TBP9_9STRA4.690e-1529.19Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9D5F8_9STRA2.080e-1146.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2IEC1_9STRA2.000e-925.44Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A0L0D2W0_THETB8.190e-626.60Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7S1Z518_TRICV3.540e-542.55Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5642900..5646526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score960.7
Seed ortholog evalue3e-277
Seed eggNOG ortholog2880.D8LAX8
Length1662
Hectar predicted targeting categoryother localisation
Gene idEc-27_006050.1
EggNOG OGs2DZXI@1,2S7DW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006050Ec-27_006050Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5642900..5646526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006050.1Ec-27_006050.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5642900..5646526 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006050.1.5Ec-27_006050.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5642900..5643740 -
Ec-27_006050.1.4Ec-27_006050.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5644218..5644360 -
Ec-27_006050.1.3Ec-27_006050.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5644995..5645195 -
Ec-27_006050.1.2Ec-27_006050.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5645682..5645882 -
Ec-27_006050.1.1Ec-27_006050.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5646251..5646526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006050.1CDS:Ec-27_006050.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5642900..5643740 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006050.1 ID=Ec-27_006050.1|Name=Ec-27_006050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=554bp
MMVRGDPTAVCMGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE
AAREERRSSGGGGMTSGNTAAAAAAAAAVPSVADITIDDHPSVYHKIPTA
LLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFA
GRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAI
SSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWG
HELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDP
ARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRV
GGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTR
REATSHGVPPPPPMAQPTPAAGPDRFTIEGADRRRYEDTGAPLGLAQEWT
PRGGTGAGGSSRRRDHSDTGWGVGGPAGVPPTVMFGNEWGRKREWRRTGY
TDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFR
QRR*
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spliced messenger RNA

>Ec-27_006050.1 ID=Ec-27_006050.1|Name=Ec-27_006050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1662bp|location=Sequence derived from alignment at chr_27:5642900..5646526- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGTACGCGGCGATCCCACTGCTGTGTGCATGGGCGCGGTGGCGGG
GGCAGAGGCGGCAACAAACCGGCCTGCGCTGCTGGTGACAATCGGTCCGC
AGTGCGCCGGGAAGACTAGCCTGCTGAGGGCGCTGGCGGCGAAGAGTGAG
GCGGCTCGAGAGGAGCGCAGAAGCAGCGGGGGCGGCGGCATGACCAGCGG
TAACACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCCCATCCGTTGCAG
ATATCACAATCGATGACCATCCTTCGGTGTACCACAAGATCCCCACGGCT
CTCTTGCTAGGCGGCTGCGCCCGGGGTAGCCCGGAAGATTTACTGCTGGC
GCAGCGCCCCCTGAGCGATCGCCTCGGCGACCCCGGTTGCGTGGAAACCC
GACTGGTGACCTTTCGGCTTGAGGGGCACATCTCTGCAGAGGAGTTTGCG
GGCCGGCTGGGGGAGTGCAGGGGTCAGGCGTCGCCGGCAGCCATCGCGGC
TCTCTGCAGGGCCGTAGAGAGCGCGGTGTCGGACAACGTGAGGATTTCCA
CCCCCACCGTAGACGTTTTCGTGAGGGAAAACCTCTTCCCTGACGCCATC
TCGTCCAGCCAGGAGAGGTTGGCGGCCGCTGCGACGGACGAGGACGGGCT
AGTGGCGTGGGGGAACACCAATACCCAGGCGAGGGACTACCGGGGAGCGC
TAGAGCAAGCAGAGCGGACCGGACGGCCGGTTCGGTTCCTGCGGTGGGGC
CACGAGCTGCCCTTCTTGAGCCTGGAGGAACTGAGTCGGCGCAACGTGTG
CCGTTTCGCGTATACAGGAAGGTACGTCGAAACGGCGGCCATCGAGAACG
CCCTCGCTCGAGTCGACAAGCTCTACGCCTCCACCGCTGGGGGAGACCCA
GCGAGGCTAGCCCTTGCGGCCGGTTTCCAGATGGATGCCTCCGGCGGGGT
TCACTCCCAATCATCCCCCCCCCGACGCAGGCACGACAGCCCAAGATCTC
GTGCCGGCCGCGGCAACGGCAGTTGGGAGAGGAATACGCGGCGACGCGTG
GGTGGCGGGGGAACAGCAGACACGAGCGCGTACAGCGGCGGCGGTATCGG
GGGCTCGGAAGGTGTCGTGCGTGGGAGGGACGGGGCGTGGGACAACAGAG
GAGGCAGCGGGACGTGGTTCCATGACGAAGCGAGTCGGCGAACCACGCGG
CGGGAAGCTACCTCGCACGGCGTACCGCCGCCGCCACCGATGGCACAACC
GACACCGGCCGCCGGGCCTGACCGGTTCACAATCGAAGGCGCGGATCGTC
GGCGCTACGAAGACACCGGCGCTCCTCTGGGGCTAGCGCAGGAATGGACC
CCTCGGGGAGGCACCGGCGCGGGGGGAAGCAGCCGACGTCGGGACCACTC
CGACACGGGGTGGGGGGTAGGGGGCCCCGCGGGCGTGCCCCCGACGGTGA
TGTTCGGGAACGAGTGGGGAAGGAAGCGGGAGTGGCGACGGACCGGCTAC
ACTGACGATGACATCGACCCGGGGATGGGGTCGTGCTTCTTCAGGACCCC
GGCGAACTCCACCGGGGTGCTCAGGCGCAGCGACCTTGGGGAAGGGATGG
GGGCGGACCTGGAGGAGATGGAGCTCGTGCGGCGGATCAAGAGTTTCCGG
CAGCGACGATGA
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protein sequence of Ec-27_006050.1

>Ec-27_006050.1 ID=Ec-27_006050.1|Name=Ec-27_006050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=554bp
MMVRGDPTAVCMGAVAGAEAATNRPALLVTIGPQCAGKTSLLRALAAKSE
AAREERRSSGGGGMTSGNTAAAAAAAAAVPSVADITIDDHPSVYHKIPTA
LLLGGCARGSPEDLLLAQRPLSDRLGDPGCVETRLVTFRLEGHISAEEFA
GRLGECRGQASPAAIAALCRAVESAVSDNVRISTPTVDVFVRENLFPDAI
SSSQERLAAAATDEDGLVAWGNTNTQARDYRGALEQAERTGRPVRFLRWG
HELPFLSLEELSRRNVCRFAYTGRYVETAAIENALARVDKLYASTAGGDP
ARLALAAGFQMDASGGVHSQSSPPRRRHDSPRSRAGRGNGSWERNTRRRV
GGGGTADTSAYSGGGIGGSEGVVRGRDGAWDNRGGSGTWFHDEASRRTTR
REATSHGVPPPPPMAQPTPAAGPDRFTIEGADRRRYEDTGAPLGLAQEWT
PRGGTGAGGSSRRRDHSDTGWGVGGPAGVPPTVMFGNEWGRKREWRRTGY
TDDDIDPGMGSCFFRTPANSTGVLRRSDLGEGMGADLEEMELVRRIKSFR
QRR*
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mRNA from alignment at chr_27:5642900..5646526-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006050.1 ID=Ec-27_006050.1|Name=Ec-27_006050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3627bp|location=Sequence derived from alignment at chr_27:5642900..5646526- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGGTACGCGGCGATCCCACTGCTGTGTGCATGGGCGCGGTGGCGGG
GGCAGAGGCGGCAACAAACCGGCCTGCGCTGCTGGTGACAATCGGTCCGC
AGTGCGCCGGGAAGACTAGCCTGCTGAGGGCGCTGGCGGCGAAGAGTGAG
GCGGCTCGAGAGGAGCGCAGAAGCAGCGGGGGCGGCGGCATGACCAGCGG
TAACACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCCCATCCGTTGCAG
ATATCACAATCGATGACCATCCTTCGGTGAGAACCAACACGTGTAACGAT
GATTGCGCATGTCTTCTTATGTGTGCTGTTTTTCGTGCCGAGGAGTGGTT
GCTCTCTCTATAATACCACATAGATATTAATAGTCTACTCCTTCTTGCGC
GACATGCTGTTGTGTGTGTTGTGCCCCGCTTCCGGAAAACATGGAAGTCT
GCCTGCGACGCAGAAGGCGTCCGCGTCAGTTGGACAAGCACGGGTGTTAG
AAGGTGGTACAGGACAAATGAAGATTCTCAATGTGGACACACCACCACTA
CCGGTAACAGCAACAACAAACGACAACATTCCTGCTGGCCGCGAGGCTCG
TGTTTCCACATGTTCACTCCGAATTTTGCCCGTTACTCCCACAGGTGTAC
CACAAGATCCCCACGGCTCTCTTGCTAGGCGGCTGCGCCCGGGGTAGCCC
GGAAGATTTACTGCTGGCGCAGCGCCCCCTGAGCGATCGCCTCGGCGACC
CCGGTTGCGTGGAAACCCGACTGGTGACCTTTCGGCTTGAGGGGCACATC
TCTGCAGAGGAGTTTGCGGGCCGGCTGGGGGAGTGCAGGGGTCAGGTACG
TTTAACGGAGGGAGTATTTTGGCAGACGGGGGAAGGTGTGATGGCGTACG
CGTGTCACAAGCAGTGGGAGCATGTCTCAGAGAAGAGATTTCGGGAGGTT
GTCTTGGGTAGGTTTGTTCCAGCCTCCCCACCGTTGAACAGGTTACAGAG
CTGTTGCTGCCGCGCTGCCGCTTTTCCTGTGATCGAAGTTGGGCAAGAAC
CGTGGTCGTTGTCGTAGCCGTTGACTCTTTTCTTGTGCTACTACTGGGCC
TCCTCTAGGCGAACGCGTGTGTTGCGTGTCCTTCCATTCTGGTGACTGCG
GCGGTGATCCCTGCAGGCGAGAGGGTTCAACAATTGCATGCGTACATTCG
GCGGCAGTGAAAATATACGGTGTGCTGGAAATTGCTCATTAGATGCGGGC
GACTGCCGCGATACGCGCAGCCTACGGCAACATGAGTACACCCCCTCCTC
TACCTGTGCGCTGAACCGTCGTCGTCGGCAGGCGTCGCCGGCAGCCATCG
CGGCTCTCTGCAGGGCCGTAGAGAGCGCGGTGTCGGACAACGTGAGGATT
TCCACCCCCACCGTAGACGTTTTCGTGAGGGAAAACCTCTTCCCTGACGC
CATCTCGTCCAGCCAGGAGAGGTTGGCGGCCGCTGCGACGGACGAGGACG
GGCTAGTGGCGTGGGGGAACACCAATACCCAGGTTTGTGGCTGGTAGTTG
AAAGCTTGACTCCGTCAAGTTGTGCGTACTCAATTTGTTTGCCTGGTGTG
CTCGTGGTAGAGCGCGGCACACGATCAATTTGGTTGCATATACTTGTGTG
GTGAATTGTAGCCTATTATAGTTTCACGTAGGTGTTGGCTTTCCCTGTGG
GTCGTGGCAGCGTGGCTCTGGGGCGGTGGGACCTGGTGTGCTAACGAGAA
CTAGCTGAAGCTGATCACGTGGAATATCCCTCCACAATCCTACTCATCTT
GCTTCCGCCGTCGCCTCTGCCTGCTTGGTGTATCGGTTTCGAAATTCGTC
CCCCCTCGGAGTTTTGCAGCCTACCGAGAAAAGTTTGCACGCGGCTCGAG
CTGTAACCTCGCGCTTGTGTTTATCCTGCCCCTGAGACACATCACCCACG
CCCTCTACACTGATGCTTCTTCTGCCCCCCCCCCCCGTGGAAGGAACGAT
TGGCCATCGGTGATCGGTCCTGTGGGAACAATGGTCCGTCCTCTCGAGGA
CGCGTGGTCAATGACCTAACCGCTAAGGCATGCAAAACATAAGAGTACGC
CCCCACCCACCCACCCACCCACCCCCTGTGACCGATGGTTGGTGAACCGG
CACTAACTCGGTTTAGGCGAGGGACTACCGGGGAGCGCTAGAGCAAGCAG
AGCGGACCGGACGGCCGGTTCGGTTCCTGCGGTGGGGCCACGAGCTGCCC
TTCTTGAGCCTGGAGGAACTGAGTCGGCGCAACGTGTGCCGTTTCGCGTA
TACAGGAAGGTTAGTGGTACGGAAACAGCATCCAAGGGGTGTGTTTAGAA
ACTCACTCGCGTGCGTTTGTTTGTTTTGTTTTTTCGGGAGCCATGTAAAC
ATGTCGAAAGACGTTTGAAACTTCGTTTTCGGAAGGGGTGAAAACGACCA
AGAGCTTTCCTCCTGGAACAGGGCTTAGGGATCATGTTGTGTTTCTTTCA
CGTTAGTTAAGCTTGTGAGGCTCATGTGTATTTTCGGCCAATAAGAGGCT
ACTGGATTTGGGCAGTTTGTTGGAGACGAGTTATGTCGATTTTGCGCGAT
GTCTTGGTTGTTTTCGAGGTATGTATCCGACGTGCCCACTCTTGTTGATC
TTGTGGTGGAGAACTCTGCCGCTGTTTGTTGTTTTGTTACTTGCGCCGCC
CCTGGCGTCACCTCCGTCATATGTCACCCCTTTCCACATTCTTCGCTGTT
GCTTCTGTTGCCCTCGCGTGTACATATGTAAACCAGGTACGTCGAAACGG
CGGCCATCGAGAACGCCCTCGCTCGAGTCGACAAGCTCTACGCCTCCACC
GCTGGGGGAGACCCAGCGAGGCTAGCCCTTGCGGCCGGTTTCCAGATGGA
TGCCTCCGGCGGGGTTCACTCCCAATCATCCCCCCCCCGACGCAGGCACG
ACAGCCCAAGATCTCGTGCCGGCCGCGGCAACGGCAGTTGGGAGAGGAAT
ACGCGGCGACGCGTGGGTGGCGGGGGAACAGCAGACACGAGCGCGTACAG
CGGCGGCGGTATCGGGGGCTCGGAAGGTGTCGTGCGTGGGAGGGACGGGG
CGTGGGACAACAGAGGAGGCAGCGGGACGTGGTTCCATGACGAAGCGAGT
CGGCGAACCACGCGGCGGGAAGCTACCTCGCACGGCGTACCGCCGCCGCC
ACCGATGGCACAACCGACACCGGCCGCCGGGCCTGACCGGTTCACAATCG
AAGGCGCGGATCGTCGGCGCTACGAAGACACCGGCGCTCCTCTGGGGCTA
GCGCAGGAATGGACCCCTCGGGGAGGCACCGGCGCGGGGGGAAGCAGCCG
ACGTCGGGACCACTCCGACACGGGGTGGGGGGTAGGGGGCCCCGCGGGCG
TGCCCCCGACGGTGATGTTCGGGAACGAGTGGGGAAGGAAGCGGGAGTGG
CGACGGACCGGCTACACTGACGATGACATCGACCCGGGGATGGGGTCGTG
CTTCTTCAGGACCCCGGCGAACTCCACCGGGGTGCTCAGGCGCAGCGACC
TTGGGGAAGGGATGGGGGCGGACCTGGAGGAGATGGAGCTCGTGCGGCGG
ATCAAGAGTTTCCGGCAGCGACGATGA
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Coding sequence (CDS) from alignment at chr_27:5642900..5646526-

>Ec-27_006050.1 ID=Ec-27_006050.1|Name=Ec-27_006050.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1662bp|location=Sequence derived from alignment at chr_27:5642900..5646526- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGGTACGCGGCGATCCCACTGCTGTGTGCATGGGCGCGGTGGCGGG
GGCAGAGGCGGCAACAAACCGGCCTGCGCTGCTGGTGACAATCGGTCCGC
AGTGCGCCGGGAAGACTAGCCTGCTGAGGGCGCTGGCGGCGAAGAGTGAG
GCGGCTCGAGAGGAGCGCAGAAGCAGCGGGGGCGGCGGCATGACCAGCGG
TAACACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCCCATCCGTTGCAG
ATATCACAATCGATGACCATCCTTCGGTGTACCACAAGATCCCCACGGCT
CTCTTGCTAGGCGGCTGCGCCCGGGGTAGCCCGGAAGATTTACTGCTGGC
GCAGCGCCCCCTGAGCGATCGCCTCGGCGACCCCGGTTGCGTGGAAACCC
GACTGGTGACCTTTCGGCTTGAGGGGCACATCTCTGCAGAGGAGTTTGCG
GGCCGGCTGGGGGAGTGCAGGGGTCAGGCGTCGCCGGCAGCCATCGCGGC
TCTCTGCAGGGCCGTAGAGAGCGCGGTGTCGGACAACGTGAGGATTTCCA
CCCCCACCGTAGACGTTTTCGTGAGGGAAAACCTCTTCCCTGACGCCATC
TCGTCCAGCCAGGAGAGGTTGGCGGCCGCTGCGACGGACGAGGACGGGCT
AGTGGCGTGGGGGAACACCAATACCCAGGCGAGGGACTACCGGGGAGCGC
TAGAGCAAGCAGAGCGGACCGGACGGCCGGTTCGGTTCCTGCGGTGGGGC
CACGAGCTGCCCTTCTTGAGCCTGGAGGAACTGAGTCGGCGCAACGTGTG
CCGTTTCGCGTATACAGGAAGGTACGTCGAAACGGCGGCCATCGAGAACG
CCCTCGCTCGAGTCGACAAGCTCTACGCCTCCACCGCTGGGGGAGACCCA
GCGAGGCTAGCCCTTGCGGCCGGTTTCCAGATGGATGCCTCCGGCGGGGT
TCACTCCCAATCATCCCCCCCCCGACGCAGGCACGACAGCCCAAGATCTC
GTGCCGGCCGCGGCAACGGCAGTTGGGAGAGGAATACGCGGCGACGCGTG
GGTGGCGGGGGAACAGCAGACACGAGCGCGTACAGCGGCGGCGGTATCGG
GGGCTCGGAAGGTGTCGTGCGTGGGAGGGACGGGGCGTGGGACAACAGAG
GAGGCAGCGGGACGTGGTTCCATGACGAAGCGAGTCGGCGAACCACGCGG
CGGGAAGCTACCTCGCACGGCGTACCGCCGCCGCCACCGATGGCACAACC
GACACCGGCCGCCGGGCCTGACCGGTTCACAATCGAAGGCGCGGATCGTC
GGCGCTACGAAGACACCGGCGCTCCTCTGGGGCTAGCGCAGGAATGGACC
CCTCGGGGAGGCACCGGCGCGGGGGGAAGCAGCCGACGTCGGGACCACTC
CGACACGGGGTGGGGGGTAGGGGGCCCCGCGGGCGTGCCCCCGACGGTGA
TGTTCGGGAACGAGTGGGGAAGGAAGCGGGAGTGGCGACGGACCGGCTAC
ACTGACGATGACATCGACCCGGGGATGGGGTCGTGCTTCTTCAGGACCCC
GGCGAACTCCACCGGGGTGCTCAGGCGCAGCGACCTTGGGGAAGGGATGG
GGGCGGACCTGGAGGAGATGGAGCTCGTGCGGCGGATCAAGAGTTTCCGG
CAGCGACGATGA
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Synonyms
The feature 'Ec-27_006050.1' has the following synonyms
Synonym
Esi0000_0080
Esi_0000_0080