Ec-27_006010.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-27_006010.1 vs. uniprot
Match: D8LAY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAY2_ECTSI) HSP 1 Score: 603 bits (1554), Expect = 9.410e-218 Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 1 Query: 1 MANSAFRSPGADPAGADLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRLK 915 MANSAFRSPGADPAGADLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRLK Sbjct: 1 MANSAFRSPGADPAGADLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRLK 305
BLAST of Ec-27_006010.1 vs. uniprot
Match: D7FWR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR8_ECTSI) HSP 1 Score: 508 bits (1307), Expect = 3.680e-180 Identity = 260/298 (87.25%), Postives = 269/298 (90.27%), Query Frame = 1 Query: 22 SPGADPAGADLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRLK 915 SP DP GA+L NHMGL+ASGALATGRA+VRITIT V HH + ALEQA+ RVV+HSIPTLREI IRG PTW GRARVGAILGELVPLSAKRHRVAPRL+RVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRD +VDDVILGALSWG+CPLVERLSFTGNRFCPEH I YLEE LWVCPRLRELRMDCSRTPHHQL VL GAL GGHVPRLERLLVRATA YYRDSDVELLALKRAAASRSPPVELELQIKT LK Sbjct: 12 SPSEDPTGAELTNHMGLDASGALATGRAVVRITITYV--------HHFQDPALEQAIRRVVQHSIPTLREIAIRGYPTWTGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVELLALKRAAASRSPPVELELQIKTLLK 301
BLAST of Ec-27_006010.1 vs. uniprot
Match: A0A6H5KDB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDB3_9PHAE) HSP 1 Score: 474 bits (1221), Expect = 8.300e-165 Identity = 247/316 (78.16%), Postives = 260/316 (82.28%), Query Frame = 1 Query: 49 DLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRARV---------------------------GAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRLK 915 +L +HMG++ASGALATGRA+VRITIT V H + ALEQA+ RVV+HSIPTLREITIRG PTW GRAR GAILGELVPLSAKRHRVAPRL+RVHLVDGATGVAKAGRAVA GLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSS+RD +VDDVIL ALSWG+CPLVE LSFTGNRFCPEH I YLEE LWVCPRLRELRMDCSRTPHH+LRVL GAL GGHVPRLERLLVRATAPYYRDSDVEL ALKR AASRSPPVELELQIKTRLK Sbjct: 141 ELTDHMGIDASGALATGRAVVRITITHV--------HETQDPALEQAIRRVVQHSIPTLREITIRGYPTWTGRARPSGGSCSIQYPPCARSPSAGAPHGPDAPGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVATGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSIRDVAVDDVILNALSWGQCPLVEHLSFTGNRFCPEHRITYLEEMLWVCPRLRELRMDCSRTPHHELRVLAGALAGGHVPRLERLLVRATAPYYRDSDVELRALKRVAASRSPPVELELQIKTRLK 448
BLAST of Ec-27_006010.1 vs. uniprot
Match: D7FWR9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWR9_ECTSI) HSP 1 Score: 462 bits (1189), Expect = 7.240e-159 Identity = 255/372 (68.55%), Postives = 264/372 (70.97%), Query Frame = 1 Query: 49 DLANHMGLEASGALATGRAIVRITITTVFESANESRHHARYKALEQAVGRVVRHSIPTLREITIRGCPTWNGRARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLG-----------------------------------------------------------------------------------WDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRLK 915 +L NHMGL+ASGALATGRA+VRITIT V HA+ ALEQA+ RVV+HSIPTLREI IR PTWNGRARVGAILGELVPLSAKRHRVAPRL+RVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLG WDDQSSVRD +VDDVILGALSWG+CPLVERLSFTGNRFCPEH I YLEE LWVCPRLRELRMDCSRTPHHQL VL GAL GGHVPRLERLLVRATA YYRDSDVELLALKRAAASRSPPVELELQIKTRLK Sbjct: 159 ELTNHMGLDASGALATGRAVVRITITHVL--------HAQDPALEQAIRRVVQHSIPTLREIAIRRYPTWNGRARVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGVGAILGELVPLSAKRHRVAPRLARVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDVAVDDVILGALSWGQCPLVERLSFTGNRFCPEHRIRYLEEMLWVCPRLRELRMDCSRTPHHQLSVLAGALAGGHVPRLERLLVRATARYYRDSDVELLALKRAAASRSPPVELELQIKTRLK 522
BLAST of Ec-27_006010.1 vs. uniprot
Match: A0A6H5KU71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU71_9PHAE) HSP 1 Score: 389 bits (998), Expect = 2.850e-134 Identity = 195/217 (89.86%), Postives = 201/217 (92.63%), Query Frame = 1 Query: 265 RARVGAILGELVPLSAKRHRVAPRLSRVHLVDGATGVAKAGRAVAAGLWPALEVLTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSSVRDASVDDVILGALSWGKCPLVERLSFTGNRFCPEHSIGYLEEALWVCPRLRELRMDCSRTPHHQLRVLVGALVGGHVPRLERLLVRATAPYYRDSDVELLALKRAAASRSPPVELELQIKTRLK 915 R RVGAI GELVPLSAKRHRVA RL+RVHLVDGATG AKAG+AVAAGL PALEV TFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQS++RDA++DDVILGALSWG CPLVERLSFTG RFCPEHSI YLEE WVCPRLRELRMDCSRTPHHQLRVL GAL G HVPRLERLLVRATAPYYRDSDVELLALK AAASRSPPV LELQIKTRLK Sbjct: 11 RPRVGAIRGELVPLSAKRHRVARRLARVHLVDGATGAAKAGKAVAAGLRPALEVPTFSHCRANAGHFRDLARGLRSGLAPRLRVLGWDDQSTIRDAALDDVILGALSWGHCPLVERLSFTGTRFCPEHSIRYLEEMFWVCPRLRELRMDCSRTPHHQLRVLAGALAGEHVPRLERLLVRATAPYYRDSDVELLALKLAAASRSPPVALELQIKTRLK 227 The following BLAST results are available for this feature:
BLAST of Ec-27_006010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-27_006010.1 ID=Ec-27_006010.1|Name=Ec-27_006010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=306bpback to top spliced messenger RNA >Ec-27_006010.1 ID=Ec-27_006010.1|Name=Ec-27_006010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=918bp|location=Sequence derived from alignment at chr_27:5615981..5617850+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGGCCAATTCTGCTTTTCGTAGCCCCGGCGCAGACCCTGCGGGAGCGGAback to top protein sequence of Ec-27_006010.1 >Ec-27_006010.1 ID=Ec-27_006010.1|Name=Ec-27_006010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=306bp MANSAFRSPGADPAGADLANHMGLEASGALATGRAIVRITITTVFESANEback to top mRNA from alignment at chr_27:5615981..5617850+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-27_006010.1 ID=Ec-27_006010.1|Name=Ec-27_006010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1870bp|location=Sequence derived from alignment at chr_27:5615981..5617850+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_27:5615981..5617850+ >Ec-27_006010.1 ID=Ec-27_006010.1|Name=Ec-27_006010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=918bp|location=Sequence derived from alignment at chr_27:5615981..5617850+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-27_006010.1' has the following synonyms
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