Ec-27_006000.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_006000.1
Unique NameEc-27_006000.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length68
Homology
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BLAST of Ec-27_006000.1 vs. uniprot
Match: A0A6H5JNQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ3_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 8.270e-40
Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 MSSQNRSKMGKAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFKALKRCFQQAAKGLKATR 201
            MSSQNRSKMG+AFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFKALKRCFQQAAKGLKATR
Sbjct:    1 MSSQNRSKMGQAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFKALKRCFQQAAKGLKATR 67
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BLAST of Ec-27_006000.1 vs. uniprot
Match: A0A0S4IW01_BODSA (Uncharacterized protein n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4IW01_BODSA)

HSP 1 Score: 46.2 bits (108), Expect = 5.620e-5
Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 1 
Query:   16 RSKMGKAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFKALKRCFQQAAK 183
            +SK G+A  K    CP + A Y  C+ A      +ERG CDE+ KAL++C  +  K
Sbjct:   19 KSKFGQALTK----CPTESATYAKCIDARQVNRTMERGCCDEERKALRKCVDKHTK 70
The following BLAST results are available for this feature:
BLAST of Ec-27_006000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNQ3_9PHAE8.270e-4098.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0S4IW01_BODSA5.620e-539.29Uncharacterized protein n=1 Tax=Bodo saltans TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5612451..5614728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length204
Hectar predicted targeting categoryother localisation
Gene idEc-27_006000.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_006000Ec-27_006000Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5610883..5615106 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006000.1.3Ec-27_006000.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5612451..5612477 -
Ec-27_006000.1.2Ec-27_006000.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5613336..5613443 -
Ec-27_006000.1.1Ec-27_006000.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5614660..5614728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006000.1CDS:Ec-27_006000.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5612451..5612477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_006000.1Ec-27_006000.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5612451..5614728 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_006000.1 ID=Ec-27_006000.1|Name=Ec-27_006000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=68bp
MSSQNRSKMGKAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFK
ALKRCFQQAAKGLKATR*
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spliced messenger RNA

>Ec-27_006000.1 ID=Ec-27_006000.1|Name=Ec-27_006000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=204bp|location=Sequence derived from alignment at chr_27:5612451..5614728- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTCAAAACCGCTCCAAAATGGGCAAGGCCTTCGCCAAGATGAC
CACGGCTTGTCCTCAGCAGATTGCTGGTTACGGGACTTGTTTACAAGCCG
CGTCTACGGCGGGCATGCTAGAGCGAGGGGTCTGCGACGAACAGTTCAAA
GCGCTCAAGCGGTGTTTCCAGCAGGCGGCAAAGGGCTTAAAGGCCACCCG
ATGA
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protein sequence of Ec-27_006000.1

>Ec-27_006000.1 ID=Ec-27_006000.1|Name=Ec-27_006000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=68bp
MSSQNRSKMGKAFAKMTTACPQQIAGYGTCLQAASTAGMLERGVCDEQFK
ALKRCFQQAAKGLKATR*
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mRNA from alignment at chr_27:5612451..5614728-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_006000.1 ID=Ec-27_006000.1|Name=Ec-27_006000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2278bp|location=Sequence derived from alignment at chr_27:5612451..5614728- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTTCTCAAAACCGCTCCAAAATGGGCAAGGCCTTCGCCAAGATGAC
CACGGCTTGTCCTCAGCAGGTCTGTTCTTCAGTGCGCGTTGCGTTTGGAC
GAAGCGTGGATGCCAAAACTCTCAGTTTTCTCTCGAGAAGAGAAATAGAA
AGGAATGGTAGATGAGCGGCGTAGTCCTCCGTGTCGCTTCAATGTACATA
GGAGCGATCCTGTTGTTCCTTGCTTTGCCGCAGAGACCCCGTCTTGAGTA
GACCCGTGTCTCTGGCGCTCCCTTCAGTGGAAATAAACAGCCGTAGGCGG
GTAGCCCGTGACGGCGACATGAATGTTCTACCCGCGGGCGTGATAACCCG
TCCCTACTTTGTGTTGGAGCGCCATAGCTCGAGGGGGTGTGATAACCCTG
GTGGCGTGACAGCCCGATGGCGTGATAGCCCGGTGGCGTGGAAGCCGGGT
GGTGGTGCGGATTCCGGGTAAAATAGGTATACAGCAGTAGAAACGGACGT
GGACATCCTACTAATGGCATGGAAGCCGGGTGGCATGATAACCAAGTATG
TTATGGGCGTGGTAGCCCTGGCCGTGATAGCCGGGAAAAAGGAATATGAC
TTTCCCAAGTACACGTGGCCATAGCGTTGCAGACACACATACCCAGAATA
CTACATTATGTGGCAAACATGGTACCACCATTCCCAATTCATCACAACTG
CAGAACCCCCCAAATGGCGCGCTCCATCTGCTCGGAACGTTCCTTGATTG
CAATAATCTGTCAATGCTGTGAGTATATCCGACAACCCGGTCGCTGGTTT
CGTGTCACGATGCGTAGTCTATTAGTAGCCGAGCTGGCGACAACTGGGTT
GGAACTGTATCCTCTGTGTTCCTTTTTCTGTTTCGAACCCCTCCGTTGAG
CGACCCGTTCGCAGCGAGGTGCTCAAGGTTGTTTGCTCTCTCTCGTCGCC
GTGTAGCCCACATCATATGCATGAATGCCTACTACTGTACGTGCACCTCG
ATACACACAGACACCCGAAGAGAAAGGTCCACCATAGACTAGACTAGAGT
ACTGCTGTAGTCAGGGATAGGCGGCGGGATAACGCACACGCACCATGGCT
CTCTGAATGAATGTACAATTTCCATCTCTTTGTGCGTGGAAAATTATCTC
TCTCTCTCACTCCACTACAGCCTCGCATTTTGTGTATACTGGATTCCACA
ACGTGCCTCACAGCTTGTGGCATATAAGGCTGACTACAGTGTCTTCCTCT
TGCTGTTGTTCCGCGTGGGTCTTCACGTGAACCAGATTGCTGGTTACGGG
ACTTGTTTACAAGCCGCGTCTACGGCGGGCATGCTAGAGCGAGGGGTCTG
CGACGAACAGTTCAAAGCGCTCAAGCGGTGTTTCCAGCAGGCGGTGAGTC
ATGCAGTCGAGAGCTCTCAAGACGCAACCTTCGTGCATCACTGTCAGATC
TTTGAAACAACGAATGTTCGATCACAGATATGAGTGCGGGATAAATTGGC
AATAAGTTCATTATGTTGCATGACCTGCGTTTCTACGATTGGCCGAGCAA
CCTATCGCGATACCTCCCCTGTGGGGAACAGACTCAACAAGACGGTGTGG
CGGTCATCTGGTGTATCTGACCATTGCTTGTGTGCTAGGAAGGTGTAGAA
GGGTGTAGATGTTGACGGTTGCTGTCAGTTGGCCCCGCGTGGTCATTCCG
AGCGCTGACACCATTAGTTCATGCTCTCACTGCTGTCGTGTCGGAAGTTT
GCTGCGGACGCCCCACTTTGAGTAGACGGCGGGCTTTACCATTGTTCTCC
TTGCGGCAGCAGCATCAAACGTGCTAAAGAATTGAGCGGGACCACCGGCC
GCAGCAGGAGGCCTCATATCAGCACTGAAAACAAGAAACACTTGGCACGC
TTTTCAGTGCCCTCAACTGATACAAGACCCTTCGCAGTCGCGTGACCGAG
AAGAAGAGCTATTGGGGGTTGGGTGCCTCCCTTGGGAAGCACAGATTTCC
TGTCGAAGACCGTGGGGGACTTATCGTTACCTTTTGTTGTCGGCATGGCG
CAGAGGCACTCGACCATCAACATCCAATGACATGATCTATCAATGTTGCC
ACGCAGACACGCAAACCACGCGCGAACGATGCTCGACGCCAACTGCAACG
AACAAGCGCACTGACGCCACGTTCCGCACCCCCGCCGCGCCGCCGCTGCT
GCTACAACACCATGTCCCAACCCCATGATTGTTTTCCCGAATTTCGTGCA
GGCAAAGGGCTTAAAGGCCACCCGATGA
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Coding sequence (CDS) from alignment at chr_27:5612451..5614728-

>Ec-27_006000.1 ID=Ec-27_006000.1|Name=Ec-27_006000.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=204bp|location=Sequence derived from alignment at chr_27:5612451..5614728- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTTCTCAAAACCGCTCCAAAATGGGCAAGGCCTTCGCCAAGATGAC
CACGGCTTGTCCTCAGCAGATTGCTGGTTACGGGACTTGTTTACAAGCCG
CGTCTACGGCGGGCATGCTAGAGCGAGGGGTCTGCGACGAACAGTTCAAA
GCGCTCAAGCGGTGTTTCCAGCAGGCGGCAAAGGGCTTAAAGGCCACCCG
ATGA
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Synonyms
The feature 'Ec-27_006000.1' has the following synonyms
Synonym
Esi000_0764
Esi_000_0764