Ec-27_005950.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005950.2
Unique NameEc-27_005950.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length107
Homology
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BLAST of Ec-27_005950.2 vs. uniprot
Match: D8LAY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY7_ECTSI)

HSP 1 Score: 369 bits (947), Expect = 5.410e-121
Identity = 243/459 (52.94%), Postives = 277/459 (60.35%), Query Frame = 1 
Query:  130 MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRLTSKLESLTTKWK--ISWMPVDKNGE-GPPDHRLLVSKWDGGSDRLTTSEGAPLAKL-TRNQIYTTAVS-RGREKKSRRTGTGRRMAAAMAARGAGREMGAGLDRPGWWWRRSRTRCGCCCSTPTS---------------C*PAVPKAGQKLRHWAVRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGL---TRPRMPSSSGTWSAGTRSR----RKERMDFTEN*SLFLSCGRCTPSRTCD------QGLHGNVGRGSCQESCRELGESQREKASELATGGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD 1407
            MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRL         + +  +     ++ G  GPP  R+ V +   G  ++    G  +++    + +Y ++V   G +K+  R G                E     D   W W R   R G       +                 P   +  +      +RRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQG    T   +      W   +  R     ++ +  +   ++       T   T        + L GN G  S +        S R++       GGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD
Sbjct:    1 MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRLXXXXXXXXHQVEDFVDAGRQERGGPAGPPAARVEVGR---GVGQIDDQRGGTVSQADAESDLYDSSVEGEGEKKQEDRNG----------------EEDGSSDGGTWGWPRDGRRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRP-----PSWRQR-------GGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD 428
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BLAST of Ec-27_005950.2 vs. uniprot
Match: A0A6H5JPB7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB7_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 7.530e-104
Identity = 228/446 (51.12%), Postives = 250/446 (56.05%), Query Frame = 1 
Query:  130 MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRLTSKLESLTTKWKISWMPVDKNGEGPPDHRLLVSKWDGGSDRLTTSEGAPLAKLTRNQIYTTAVSRGREKKSRRTGTGRRMAAAMAARGAGREMGAGLDRPGWWWRRSRTRCGCCCSTPTSC*PAV------------PKAGQKLRHWAV---RRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGL---TRPRMPSSSGTW---SAG-TRSRRKERMDFTEN*SLFLSCGRCTPSRTCD------QGLHGNVGRGSCQESCRELGESQREKASELATGGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPP 1383
            MPRERV GLTLFMWR RC VKVAILVVC LARATAAAE AITSSE SQA ALAGLNDKLDRLTSKLESLT + +       + G GP               R+    G       R  I   A +     +S   G+     A               D   W W R   R G       +    V            P   +  R + V   RRRLYWVIAGVL+AYWSREVLSMLIASPYASPLTLKMVA SSLYHVGKIILIS DAQRRWSPTMGIMRLLMDHWHMSSFKD LLC+KRMSLQG    T   +      W   SAG T    ++ +  +   ++       T   T        + L GN             G S  ++       GGGMFG LDGGRAEFTCT SCSHGHKSCEVCHLLTRDKPAAL PPP
Sbjct:    1 MPRERVGGLTLFMWRLRCDVKVAILVVCSLARATAAAEEAITSSEVSQAGALAGLNDKLDRLTSKLESLTHQVEDFVDAGRQEGGGPAGPSAA---------RVEAGRGVGQIDDQRRGIVRPAAA-----ESDLDGSSIEGEAEEKQXXXXXXXXXXXDGGSWGWARDGRRFGPAWLVVATFVHEVWLLLQHANILLNPLCQRLDRSYGVGLLRRRLYWVIAGVLSAYWSREVLSMLIASPYASPLTLKMVATSSLYHVGKIILISRDAQRRWSPTMGIMRLLMDHWHMSSFKDALLCVKRMSLQGFDTATHALIVRDMVRWDEESAGRTHGLHQKLIIVSVVWAMHAIANLVTKVSTATLVVEVAKSLVGN------------WGSSSGKRPPSWRQRGGGMFGGLDGGRAEFTCTASCSHGHKSCEVCHLLTRDKPAALPPPP 420
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BLAST of Ec-27_005950.2 vs. uniprot
Match: A0A836C6P6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6P6_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.340e-40
Identity = 101/226 (44.69%), Postives = 125/226 (55.31%), Query Frame = 1 
Query:  724 VRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGLTRPRMPSSSGTWSAGTRSRRKERMDFTEN*SLFLSCGRCTPSRTCDQGLHG--NVGRG-SCQESCRELGESQRE------KASELATGGGGMFG----ALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKP 1362
            +++R YWVIAGVL AYW RE+LSML A PY +PLT  M+A+S +YH+GKIIL+S+DAQR WSPT+GIMRLL+DHWH+ S  D+++  KR +LQ          S T     R     RM  +          R     +    LH   NV  G S       L ++  E      KA+  A+   G  G    ALDGGR E TC   C HGH  C VCHLLTRD P
Sbjct:   76 LKKRQYWVIAGVLGAYWLREILSMLAALPYTAPLTSNMIAVSCVYHLGKIILVSIDAQRGWSPTLGIMRLLIDHWHLRSLADLMISAKRFALQARQLSHCAFDSLTHVLIVRDLVSGRMTRSV---ASAELERLVVITSLVWALHALANVVTGLSTATLMVRLAKAILEVFASHPKATSTASQHNGHSGGSALALDGGRGELTCGPQCRHGHGKCVVCHLLTRDMP 298
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BLAST of Ec-27_005950.2 vs. uniprot
Match: A0A7S4KNY6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KNY6_GUITH)

HSP 1 Score: 112 bits (280), Expect = 2.620e-23
Identity = 55/108 (50.93%), Postives = 76/108 (70.37%), Query Frame = 1 
Query:  682 PAVPKAGQKLRHWAVRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQG 1005
            P + +  +K     +R+R YWVIAGVL+AYW+REVLSM++   Y S  T  M+ +S +YH+ KI L+SLDA R++SP +GIM LL+D WH+ S  D L+ LKR+ LQG
Sbjct:  125 PYLQRLDRKYGIALLRKRFYWVIAGVLSAYWAREVLSMMLCYSYVSDATKTMIMMSCIYHIAKICLVSLDAARKFSPRLGIMSLLIDQWHLDSLVDALITLKRVLLQG 232
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BLAST of Ec-27_005950.2 vs. uniprot
Match: A0A812Q1W1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Q1W1_9DINO)

HSP 1 Score: 93.2 bits (230), Expect = 1.070e-16
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:  724 VRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQG 1005
            +R+  +WVIAGVL  YWSREV+SML+   + SP T   + +SS YH+ K+  I  DAQR WSP++GIMRLL+DHWH  S     +   R  LQG
Sbjct:  366 LRKGQHWVIAGVLVMYWSREVISMLLCLAFTSPRTQLAILVSSGYHLVKMQSICCDAQRGWSPSLGIMRLLIDHWHFDSLAQRAVSALRFFLQG 459
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BLAST of Ec-27_005950.2 vs. uniprot
Match: A0A1Q9D0R3_SYMMI (Caroteno-chlorophyll a-c-binding protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D0R3_SYMMI)

HSP 1 Score: 93.2 bits (230), Expect = 2.160e-16
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:  724 VRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQG 1005
            +R+  +WVIAGVL  YWSREV+SML+   + SP T   + +SS YH+ K+  I  DAQR WSP++GIMRLL+DHWH  S     +   R  LQG
Sbjct:  366 LRKGQHWVIAGVLVMYWSREVISMLLCLAFTSPRTQLAILVSSGYHLVKMQSICCDAQRGWSPSLGIMRLLIDHWHFDSLAQRAVSALRFLLQG 459
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BLAST of Ec-27_005950.2 vs. uniprot
Match: A0A812Z067_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812Z067_9DINO)

HSP 1 Score: 92.4 bits (228), Expect = 2.610e-16
Identity = 48/94 (51.06%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  724 VRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQG 1005
            +R+  +WVIAGVL  YWSREV+SML+   + S  T   + +SS YHV K+  I  DAQR+WSP++GIMRLL+DHWH  +    L+   R  LQG
Sbjct:  368 LRKGEHWVIAGVLVMYWSREVISMLLCLAFTSRRTQLAILVSSGYHVVKMHSICCDAQRQWSPSLGIMRLLIDHWHFDTLAQRLVSALRFFLQG 461
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BLAST of Ec-27_005950.2 vs. uniprot
Match: A0A812V2L4_9DINO (CER3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V2L4_9DINO)

HSP 1 Score: 92.8 bits (229), Expect = 3.020e-16
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:  724 VRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQG 1005
            +R+  +WVIA VL  YW+REV SML+  PY +  +   V +S++YH  K+  I LDA R WSPT+GIM+LL+DHWH  +    L+ L R SLQG
Sbjct:   86 LRKGQHWVIASVLVMYWAREVASMLLCLPYITVYSQIAVFVSTIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFQTLGTQLVSLLRFSLQG 179
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BLAST of Ec-27_005950.2 vs. uniprot
Match: L1J6G4_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J6G4_GUITC)

HSP 1 Score: 80.1 bits (196), Expect = 3.780e-12
Identity = 49/117 (41.88%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:  682 PAVPKAGQKLRHWAVRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTM---GIMRLLMDHWHMSSFK-------DVLLCLKRMSLQ 1002
            P + +  +K     +R+R YWVIAGVL+AYW+REVLSM++   Y S  T  M+ +S +YH+ K+I  S D+   ++ T+   GIM LL+D WH+ S         D L+ LKR+ LQ
Sbjct:  117 PYLQRLDRKYGIALLRKRFYWVIAGVLSAYWAREVLSMMLCYSYVSDATKTMIMMSCIYHIAKVIK-SFDSDE-FNDTLQRLGIMSLLIDQWHLDSLVVIHSLDVDALITLKRVLLQ 231
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BLAST of Ec-27_005950.2 vs. uniprot
Match: A0A6U3TV35_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TV35_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.510e-9
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 1 
Query:  724 VRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQG 1005
            +R   +W IAG L+AYW RE + M + +P+    T  +V  S +YH  K   + LDA RR+SP  GIMR+++D +H+ +  + +L   R+ LQG
Sbjct:   99 LRSNQHWAIAGTLSAYWCRESMCMFLCTPFLPRHTQYLVLYSLVYHTIKSRGVRLDAIRRYSPQFGIMRIVIDKFHLHTTAEAILTAVRLLLQG 192
The following BLAST results are available for this feature:
BLAST of Ec-27_005950.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LAY7_ECTSI5.410e-12152.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPB7_9PHAE7.530e-10451.12Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836C6P6_9STRA1.340e-4044.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4KNY6_GUITH2.620e-2350.93Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A812Q1W1_9DINO1.070e-1651.06Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A1Q9D0R3_SYMMI2.160e-1651.06Caroteno-chlorophyll a-c-binding protein n=1 Tax=S... [more]
A0A812Z067_9DINO2.610e-1651.06Hypothetical protein n=2 Tax=unclassified Symbiodi... [more]
A0A812V2L4_9DINO3.020e-1650.00CER3 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
L1J6G4_GUITC3.780e-1241.88Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6U3TV35_9STRA7.510e-939.36Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5546098..5550600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1417
Hectar predicted targeting categoryother localisation
Gene idEc-27_005950.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005950Ec-27_005950Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5546098..5550600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005950.2Ec-27_005950.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5547957..5548277 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005950.2.1Ec-27_005950.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5546098..5546437 +
Ec-27_005950.2.2Ec-27_005950.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5547935..5548321 +
Ec-27_005950.2.3Ec-27_005950.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5548692..5548970 +
Ec-27_005950.2.4Ec-27_005950.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5549365..5549505 +
Ec-27_005950.2.5Ec-27_005950.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5549823..5549924 +
Ec-27_005950.2.6Ec-27_005950.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5550433..5550600 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0059505UTR:Ec-27_005950.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 5546098..5546437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005950.2CDS:Ec-27_005950.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5547957..5548277 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0059503UTR:Ec-27_005950.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 5548278..5548321 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005950.2 ID=Ec-27_005950.2|Name=Ec-27_005950.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=107bp
MPVDKNGEGPPDHRLLVSKWDGGSDRLTTSEGAPLAKLTRNQIYTTAVSR
GREKKSRRTGTGRRMAAAMAARGAGREMGAGLDRPGWWWRRSRTRCGCCC
STPTSC*
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spliced messenger RNA

>Ec-27_005950.2 ID=Ec-27_005950.2|Name=Ec-27_005950.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1417bp|location=Sequence derived from alignment at chr_27:5546098..5550600+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ACGCAGAGGCACACGCGCACAAGCAGAGAGACAACGACAGAAGAAACCGG
CCGTCGCTGTACCCCACGTAGTCGTGGAATGCCGCATAGACGAAGGTCAA
GCTTCCAGCACTTTGCGTAATCGGGCCGCCATGCCTCGTGAAAGAGTCAG
CGGTCTGACGCTGTTCATGTGGCGGCCTCGTTGTCATGTCAAGGTGGCGA
TCCTTGTAGTCTGCTGCCTGGCGAGAGCAACAGCAGCCGCAGAAGCAGCG
ATCACAAGCAGCGAATCCTCCCAGGCGGATGCCCTCGCTGGTCTCAACGA
TAAACTCGACAGGTTAACCAGCAAACTTGAGTCTCTGACGCACCAAGTGG
AAGATTTCGTGGATGCCGGTCGACAAGAACGGGGAGGGCCCGCCGGACCA
CCGGCTGCTCGTGTCGAAGTGGGACGGGGGGTCGGACAGATTGACGACCA
GCGAGGGGGCACCGTTAGCCAAGCTGACGCGGAATCAGATTTATACGACA
GCAGTGTCGAGGGGGAGGGAGAAAAAAAGCAGGAGGACAGGAACGGGGAG
GAGGATGGCAGCAGCGATGGCGGCACGTGGGGCTGGCCGCGAGATGGGCG
CCGGTTTGGACCGGCCTGGTTGGTGGTGGCGACGTTCGCGCACGAGGTGT
GGCTGTTGCTGCAGCACGCCAACATCTTGCTGAACCCGCTGTGCCAAAGG
CTGGACAGAAGCTACGGCATTGGGCTGCTGAGGCGAAGGTTGTACTGGGT
TATCGCCGGCGTGCTGGCGGCCTACTGGTCGCGGGAGGTGCTGTCCATGC
TGATCGCATCTCCCTACGCCTCTCCTCTCACGCTGAAGATGGTGGCGATA
AGCTCCTTGTACCACGTGGGAAAGATCATTCTCATCTCACTGGACGCGCA
GCGACGGTGGTCGCCGACGATGGGGATAATGCGGTTGCTCATGGACCACT
GGCATATGTCCTCCTTCAAGGACGTGCTGCTCTGTCTCAAGAGAATGTCG
CTCCAGGGGTTTGACACGGCCACGCATGCCCTCATCGTCCGGGACATGGT
CCGCTGGGACGAGGAGTCGGCGGAAAGAACGCATGGACTTCACCGAAAAC
TGATCGTTGTTTCTGTCGTGTGGGCGATGCACGCCATCGCGAACCTGGTG
ACCAGGGTCTCCACGGCAACGTTGGTCGTGGAAGTTGCCAAGAGTCTTGT
CGGGAACTGGGGGAGTCCCAGCGGGAAAAGGCCTCCGAGTTGGCGACAGA
GAGGAGGCGGCATGTTCGGCGCGTTGGACGGCGGGCGCGCGGAGTTCACT
TGCACGACGAGCTGCTCGCATGGCCACAAGAGTTGCGAAGTTTGCCACCT
GCTCACGAGGGACAAGCCTGCCGCATTGGCTCCCCCCCCCCATCCCACAC
GGAAACGCGTCGACTAA
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protein sequence of Ec-27_005950.2

>Ec-27_005950.2 ID=Ec-27_005950.2|Name=Ec-27_005950.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=107bp
MPVDKNGEGPPDHRLLVSKWDGGSDRLTTSEGAPLAKLTRNQIYTTAVSR
GREKKSRRTGTGRRMAAAMAARGAGREMGAGLDRPGWWWRRSRTRCGCCC
STPTSC*
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mRNA from alignment at chr_27:5546098..5550600+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005950.2 ID=Ec-27_005950.2|Name=Ec-27_005950.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4503bp|location=Sequence derived from alignment at chr_27:5546098..5550600+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ACGCAGAGGCACACGCGCACAAGCAGAGAGACAACGACAGAAGAAACCGG
CCGTCGCTGTACCCCACGTAGTCGTGGAATGCCGCATAGACGAAGGTCAA
GCTTCCAGCACTTTGCGTAATCGGGCCGCCATGCCTCGTGAAAGAGTCAG
CGGTCTGACGCTGTTCATGTGGCGGCCTCGTTGTCATGTCAAGGTGGCGA
TCCTTGTAGTCTGCTGCCTGGCGAGAGCAACAGCAGCCGCAGAAGCAGCG
ATCACAAGCAGCGAATCCTCCCAGGCGGATGCCCTCGCTGGTCTCAACGA
TAAACTCGACAGGTTAACCAGCAAACTTGAGTCTCTGACGGTGAGTGGGT
GATCCTCGCGCACGGCAACATAACGTGCGTCCTTGGGACAAAGTCAGCAG
CCATGTTTCGCCAGCGACGCTCGCGTGTCATTCTTCAGAGTCCGACCCGC
TGTTAGTGTGGCGCAGCGTGTGTGTGTGTGTGTGTGCGTGTGTTGTAAGC
TACGCTTGCTTGTATAGGGATTCAAGCCGCGGCTCCTTTGTACTGACTGC
GCCTGGCCCTGTAGCTGAAGATCTCCGGTCGAAGATGTTGGCAAGTGGTA
CGGATCACGTGCGACTGCTGCTGTCGCAGGAAAAAACTCTCGAGAAAGCT
CAGTGTCCTCACTGGAGGTCACTGAAAAGACTTCCACACATCCCAATCCA
CTATTGTGCTCATATCTCGAATGGGTAGTCTTTCTGTGTGAGAGAACGTT
TGTTTTCTAAAAAACGTAGACTGGGTCAACTTGATTGACTTGTATGCAAT
GTGTAGATAGCAGGTAGTCGTTTGGGTTGTTGAAGGTACCTGGTAACGAG
TCCGTGCGCCCGTCCGTTTTGCCAGAAGAAAAACGTCACACAGGAGATAA
CCTTGGCCACCACACACGTGCCTTAACCCAACTTCCCCAATTGAATGCTT
TATCCAACGTGTTTACTTGATCGAAAAACCTTCGAAGGCTACTGTTGGTG
ATAATGCCTCTCTCCAAGGTCACTGCCGATGAAAAAAAGAGCCGCACAAA
AAAACATTCGTGGTTGAATCGAGACCCAACTACAATTTTCTTCTCCCCTA
TCGCTTCCTCCACCGCTAGTTATAACAAACAGCAGGAGTAGAGGCGATAT
CCTCCCGCACACAAGAAGTGTAGAGAGGAGTACAGCAGTACATGCATCGT
CAATGGTGGTGTCTAGGAACGAGTGTGATGTTGGTGTGATGCCTCTCTCG
AAGGTCGCTGCCGAGATGGAAAAGCCGCTGCAAACAAAAAAAGCAACAAG
CGGTGAACGCAGACCCGACCAAACGTTCGTCTCCTCTCGCTTCTTCGGCC
GATAGCTAGCAGCAGTAGTGTAGGGCACACCCTGCTCCCGTTTCGCTATG
GCTGTGGCGTGTGTCTCCCTCCCCCCTGGTCCATGTCTGGCTCGGTCTGT
CTTGCGTGAGAAACTACCTCTGGTTCCAACGTATTGCAAACCAGAAAATG
GTGCCTCCTCGTTGCGAGGGGTTAGACGCTTCCTACTTCAAGTTCGGCGC
AGACCCTGTGCTGTTATATGTTATATGAGGTCTCGTCGCCCCCCACATTT
TGTGCAGCTGAGACCGTCCGGGTTATAGGGCCTTTGTGATCGCTAGTGCT
CCTCGCACAGACCACGACTTCATGTAAATATCACCACGAGTTCCGTCGTG
AATATCTACCCGGAAACAACTTGCGATGCTCGAGTCGAACAGTATTGTTG
CTATCCTCCTCTCCCACTTCCTTCTCCAACTTCACGGGCACATTTCCCCC
TCATCGCCTCCACGATGACAAACCTCGGCCTTCCCAGCACCAAGTGGAAG
ATTTCGTGGATGCCGGTCGACAAGAACGGGGAGGGCCCGCCGGACCACCG
GCTGCTCGTGTCGAAGTGGGACGGGGGGTCGGACAGATTGACGACCAGCG
AGGGGGCACCGTTAGCCAAGCTGACGCGGAATCAGATTTATACGACAGCA
GTGTCGAGGGGGAGGGAGAAAAAAAGCAGGAGGACAGGAACGGGGAGGAG
GATGGCAGCAGCGATGGCGGCACGTGGGGCTGGCCGCGAGATGGGCGCCG
GTTTGGACCGGCCTGGTTGGTGGTGGCGACGTTCGCGCACGAGGTGTGGC
TGTTGCTGCAGCACGCCAACATCTTGCTGAACCCGCTGTGCCAAAGGCTG
GACAGAAGCTACGGCATTGGGCTGGTAAGAAGTTGAGCTCACAGCTGCTT
TTCTTTTATTGAAAGTCAGTCTCGTGCGCGAACGACAATGTCACGACCTG
ACCTGTGTTTCTCAAGGTTTTGCTAAGTTCAGTGCCGCGAATTAGCGGCT
GTTTGTCATCGTCCTCAGCTTGCATTGCCTCCTGTGCTGCCGGGCGTGGC
GAGCTGCTGATACGTCTGTTTGGCCTCCGGTTGATGCAAGCAAATCTGTA
GTCGACATAACGTCACATGTTTCCACCTGTGAGACCGATGGGCCCTCCGC
CCTGGACCTAAAACCAATTCCTGCGTGCTCGGCCTGCTCACACACGTGCG
TCGCGTGGCTGCTTCGTTGCCTCATGGCGTGCTTGCTGCTGCAGCTGAGG
CGAAGGTTGTACTGGGTTATCGCCGGCGTGCTGGCGGCCTACTGGTCGCG
GGAGGTGCTGTCCATGCTGATCGCATCTCCCTACGCCTCTCCTCTCACGC
TGAAGATGGTGGCGATAAGCTCCTTGTACCACGTGGGAAAGATCATTCTC
ATCTCACTGGACGCGCAGCGACGGTGGTCGCCGACGATGGGGATAATGCG
GTTGCTCATGGACCACTGGCATATGTCCTCCTTCAAGGACGTGCTGCTCT
GTCTCAAGAGAATGTCGCTCCAGGTAGGGAACAGGCGCGCGTTCCAGAAC
ATTCCTCCGGCCCCTGCGCCGACAATACACGACCTGACCTTCGAGATCCG
AAGTCCTGCTTTTTGAGAGAGTGTTCCCTACAGACTGATGCGGGAAATCG
GCGAATCGAAGAACATATTTGCGTCACCTTGGCGGTCAACTCTACCCAGT
TGTGGTGTCCCATGTACCGATTGCCCTAGAGCGACACCTAGCGCTCTGCC
CCTTCCGGTTCATGTGAAAGCGGTCGAGATACCATGTGTACCTCTTTCGA
TGCAGACCACATCAATACCATGTGCAGCTATGTATCGGCTGCCGTAGATG
GGCCGAAGTTTATGCTTGGACATCGGCCCTCTGATCCACATCGTCTGGGG
GTGTCGCCTCCTTACAGGGGTTTGACACGGCCACGCATGCCCTCATCGTC
CGGGACATGGTCCGCTGGGACGAGGAGTCGGCGGAAAGAACGCATGGACT
TCACCGAAAACTGATCGTTGTTTCTGTCGTGTGGGCGATGCACGCCATCG
CGAACCTGGTGAGTGAACAACATCCGACAAGGCGAAGAAACGGTTCAAGA
GATTGGAGCCCGTGCGCACCAAAACGCAGGTCGAGCGCGCTGCACCGGTA
CCAGTATGTTGCACCTGTGTCTGCCGAGGGTTCCTTCCTGAATAGAGGAT
TTCCCCCCGTTCAAGACCACTTCTTCGGCAATTCATCATAGGGCCAACAT
ACCGCCACGGCCCCACCGTTAGGAAGCAAGCCTTGGGACCGCAGGTCACG
ATTGATGTGTGTAGCATTTGCCCTTACGCTCCAGGTCACTGAGCTGATCG
TACCCCCCCCGCGTGTCTATGTCAGGTGACCAGGGTCTCCACGGCAACGT
TGGTCGTGGAAGTTGCCAAGAGTCTTGTCGGGAACTGGGGGAGTCCCAGC
GGGAAAAGGCCTCCGAGTTGGCGACAGGTGAGTGTAGTGGTCACACCGGG
GCTTCATTTATACGAGACACGAGGCGAGGATTTCGACCAACGGGCTGGGC
ATTCATGGGCATGTAGCGACGAGGTTTTGAGGCGTCTGCCCGAACAATGT
GCAGCATTGATCGGAAAGGGACTGCCACAGATCTTGCTGCGGTGTCTTCC
GTCTCTACGTGGTGTATCAGAACGTCGCTGGACGCCTCCTGGCCTCCGTT
GGCCTTCGCAGTGTACTTCGGTATTCAACCGGCTGTCGTGCGCGTGAAAT
CGCTTCATCCGTTGAAATTTTGGGGGTGGACGTGTTGCTGCGACATTTTG
GTGCCAGTTCGCAAGTGTTTTTTATTGAGTCTTTGAGGGGGAAGACCCTG
GTTCTAAAAGGTGAAGAACAAGGTGATGTGGGTTGCAGCCATCGTCCCTT
CATTGCTTTCTGCCGCCATGGCTCGGCATGAATCATGGTAAAAACTGCAA
TCTGTAATGCCTCCCCCGCTTCCGAGCTGTCACAGAGAGGAGGCGGCATG
TTCGGCGCGTTGGACGGCGGGCGCGCGGAGTTCACTTGCACGACGAGCTG
CTCGCATGGCCACAAGAGTTGCGAAGTTTGCCACCTGCTCACGAGGGACA
AGCCTGCCGCATTGGCTCCCCCCCCCCATCCCACACGGAAACGCGTCGAC
TAA
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Coding sequence (CDS) from alignment at chr_27:5546098..5550600+

>Ec-27_005950.2 ID=Ec-27_005950.2|Name=Ec-27_005950.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=321bp|location=Sequence derived from alignment at chr_27:5546098..5550600+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGGTCGACAAGAACGGGGAGGGCCCGCCGGACCACCGGCTGCTCGT
GTCGAAGTGGGACGGGGGGTCGGACAGATTGACGACCAGCGAGGGGGCAC
CGTTAGCCAAGCTGACGCGGAATCAGATTTATACGACAGCAGTGTCGAGG
GGGAGGGAGAAAAAAAGCAGGAGGACAGGAACGGGGAGGAGGATGGCAGC
AGCGATGGCGGCACGTGGGGCTGGCCGCGAGATGGGCGCCGGTTTGGACC
GGCCTGGTTGGTGGTGGCGACGTTCGCGCACGAGGTGTGGCTGTTGCTGC
AGCACGCCAACATCTTGCTGA
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Synonyms
The feature 'Ec-27_005950.2' has the following synonyms
Synonym
Esi0000_0095
Esi_0000_0095