Ec-27_005950.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005950.1
Unique NameEc-27_005950.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length429
Homology
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BLAST of Ec-27_005950.1 vs. uniprot
Match: D8LAY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY7_ECTSI)

HSP 1 Score: 827 bits (2136), Expect = 2.670e-302
Identity = 428/428 (100.00%), Postives = 428/428 (100.00%), Query Frame = 1 
Query:    1 MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRLXXXXXXXXHQVEDFVDAGRQERGGPAGPPAARVEVGRGVGQIDDQRGGTVSQADAESDLYDSSVEGEGEKKQEDRNGEEDGSSDGGTWGWPRDGRRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD 1284
            MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRLXXXXXXXXHQVEDFVDAGRQERGGPAGPPAARVEVGRGVGQIDDQRGGTVSQADAESDLYDSSVEGEGEKKQEDRNGEEDGSSDGGTWGWPRDGRRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD
Sbjct:    1 MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRLXXXXXXXXHQVEDFVDAGRQERGGPAGPPAARVEVGRGVGQIDDQRGGTVSQADAESDLYDSSVEGEGEKKQEDRNGEEDGSSDGGTWGWPRDGRRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPPHPTRKRVD 428
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BLAST of Ec-27_005950.1 vs. uniprot
Match: A0A6H5JPB7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB7_9PHAE)

HSP 1 Score: 704 bits (1816), Expect = 2.190e-253
Identity = 364/420 (86.67%), Postives = 373/420 (88.81%), Query Frame = 1 
Query:    1 MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQADALAGLNDKLDRLXXXXXXXXHQVEDFVDAGRQERGGPAGPPAARVEVGRGVGQIDDQRGGTVSQADAESDLYDSSVEGEGEKKQEDRNGEEDGSSDGGTWGWPRDGRRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKPAALAPPP 1260
            MPRERV GLTLFMWR RC VKVAILVVC LARATAAAE AITSSE SQA ALAGLNDKLDRL        HQVEDFVDAGRQE GGPAGP AARVE GRGVGQIDDQR G V  A AESDL  SS+EGE E+KQ           DGG+WGW RDGRRFGPAWLVVATF HEVWLLLQHANILLNPLCQRLDRSYG+GLLRRRLYWVIAGVL+AYWSREVLSMLIASPYASPLTLKMVA SSLYHVGKIILIS DAQRRWSPTMGIMRLLMDHWHMSSFKD LLC+KRMSLQGFDTATHALIVRDMVRWDEESA RTHGLH+KLI+VSVVWAMHAIANLVT+VSTATLVVEVAKSLVGNWGS SGKRPPSWRQRGGGMFG LDGGRAEFTCT SCSHGHKSCEVCHLLTRDKPAAL PPP
Sbjct:    1 MPRERVGGLTLFMWRLRCDVKVAILVVCSLARATAAAEEAITSSEVSQAGALAGLNDKLDRLTSKLESLTHQVEDFVDAGRQEGGGPAGPSAARVEAGRGVGQIDDQRRGIVRPAAAESDLDGSSIEGEAEEKQXXXXXXXXXXXDGGSWGWARDGRRFGPAWLVVATFVHEVWLLLQHANILLNPLCQRLDRSYGVGLLRRRLYWVIAGVLSAYWSREVLSMLIASPYASPLTLKMVATSSLYHVGKIILISRDAQRRWSPTMGIMRLLMDHWHMSSFKDALLCVKRMSLQGFDTATHALIVRDMVRWDEESAGRTHGLHQKLIIVSVVWAMHAIANLVTKVSTATLVVEVAKSLVGNWGSSSGKRPPSWRQRGGGMFGGLDGGRAEFTCTASCSHGHKSCEVCHLLTRDKPAALPPPP 420
[Close]
BLAST of Ec-27_005950.1 vs. uniprot
Match: A0A836C6P6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6P6_9STRA)

HSP 1 Score: 280 bits (716), Expect = 2.420e-88
Identity = 142/259 (54.83%), Postives = 182/259 (70.27%), Query Frame = 1 
Query:  490 LVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQG-------FDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRG--GGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTRDKP 1239
            LV     HEVW++LQH N+LLNPLCQRLDR YGI LL++R YWVIAGVL AYW RE+LSML A PY +PLT  M+A+S +YH+GKIIL+S+DAQR WSPT+GIMRLL+DHWH+ S  D+++  KR +LQ        FD+ TH LIVRD+V      +  +  L R +++ S+VWA+HA+AN+VT +STATL+V +AK+++  + S       + +  G  GG   ALDGGR E TC   C HGH  C VCHLLTRD P
Sbjct:   40 LVALLLVHEVWVMLQHLNVLLNPLCQRLDRGYGISLLKKRQYWVIAGVLGAYWLREILSMLAALPYTAPLTSNMIAVSCVYHLGKIILVSIDAQRGWSPTLGIMRLLIDHWHLRSLADLMISAKRFALQARQLSHCAFDSLTHVLIVRDLVSGRMTRSVASAELERLVVITSLVWALHALANVVTGLSTATLMVRLAKAILEVFASHPKATSTASQHNGHSGGSALALDGGRGELTCGPQCRHGHGKCVVCHLLTRDMP 298
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BLAST of Ec-27_005950.1 vs. uniprot
Match: A0A7S4KNY6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KNY6_GUITH)

HSP 1 Score: 206 bits (524), Expect = 3.490e-58
Identity = 105/189 (55.56%), Postives = 136/189 (71.96%), Query Frame = 1 
Query:  505 FAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLV 1071
            FAHEVW+ +QHAN+LLNP  QRLDR YGI LLR+R YWVIAGVL+AYW+REVLSM++   Y S  T  M+ +S +YH+ KI L+SLDA R++SP +GIM LL+D WH+ S  D L+ LKR+ LQGFDTATH  IV DM+  D+E       L    + ++ VW +HA+A  VT+ STATL VE  K+++
Sbjct:  108 FAHEVWIFMQHANVLLNPYLQRLDRKYGIALLRKRFYWVIAGVLSAYWAREVLSMMLCYSYVSDATKTMIMMSCIYHIAKICLVSLDAARKFSPRLGIMSLLIDQWHLDSLVDALITLKRVLLQGFDTATHCKIVLDMISKDKE-------LLSFAVFIAAVWFVHALACQVTKKSTATLFVETFKAVI 289
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BLAST of Ec-27_005950.1 vs. uniprot
Match: A0A812V2L4_9DINO (CER3 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812V2L4_9DINO)

HSP 1 Score: 184 bits (468), Expect = 2.030e-47
Identity = 109/242 (45.04%), Postives = 139/242 (57.44%), Query Frame = 1 
Query:  505 FAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHKSCEVCHLLTR 1230
            F HE W++LQHAN+LLNP CQRLDR YG+ +LR+  +WVIAGVL  YWSREV+SML+   + SP T   +  SS YH+ K+  I  DAQR+WSP++GIMRLL+DHWH  +    L+   R  LQG DT TH +IVRDM+      +  T G    L  + ++W +HA  N  T+ STATL VE                  +WR        AL    A  T T  C  G K C+VC LL +
Sbjct:  331 FLHEAWVMLQHANVLLNPFCQRLDRRYGVSMLRKGQHWVIAGVLVMYWSREVVSMLLCLAFTSPRTQLAILASSGYHLVKMHSICWDAQRQWSPSLGIMRLLIDHWHFDTLAQRLVSALRFFLQGSDTLTHIMIVRDMLT--RSGSPITAGRLLPLHGLFLLWVVHAALNQATQRSTATLFVE------------------AWRA-------ALYRQEAPATPTACC--GSKGCQVCSLLAK 543
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BLAST of Ec-27_005950.1 vs. uniprot
Match: A0A812Q1W1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812Q1W1_9DINO)

HSP 1 Score: 175 bits (443), Expect = 4.830e-46
Identity = 103/252 (40.87%), Postives = 134/252 (53.17%), Query Frame = 1 
Query:  490 LVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSH----GHKSCEVCHLLTRD 1233
            L      HE W+ LQH N+LLNP CQRLDR+YGI +L++  +WVIA VL  YW+REV SML+  PY S  +   V +S++YH  K+  I LDA R WSPT+GIM+LL+DHWH  +    L+ L R  LQG+DT  H  IV D++            LH    V+ +VW +HA+ N  ++ STATLVVE                  SWR         + G   +  C  +  H       SC VC LL  D
Sbjct:   53 LAALLLLHEAWVTLQHGNVLLNPFCQRLDRNYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIHHGGLGTGYVWWLH----VLFLVWLLHAVLNQTSQQSTATLVVE------------------SWRY--------ILGFHTKKACNDTSCHLAALPGNSCVVCELLKED 274
[Close]
BLAST of Ec-27_005950.1 vs. uniprot
Match: A0A812Z067_9DINO (Hypothetical protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812Z067_9DINO)

HSP 1 Score: 175 bits (443), Expect = 2.270e-45
Identity = 104/244 (42.62%), Postives = 133/244 (54.51%), Query Frame = 1 
Query:  511 HEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGH---KSCEVCHLLTRD 1233
            HE W+ LQH N+LLNP CQRLDR YGI +L++  +WVIA VL  YW+REV SML+  PY +  +   V +S++YH  K+  I LDA R WSPT+GIM+LL+DHWH  +    L+ L R  LQG+DT  H  IV D++            LH    V+ +VW +HA+ N V++ STATLVVE                  SWR         L   R +    TSC        SC VC LL  D
Sbjct:   62 HEAWVTLQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYITVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFYTLGTQLVSLLRFLLQGYDTMVHVFIVSDLIHHGGLGTSYVWWLH----VLFLVWLLHAVLNQVSQQSTATLVVE------------------SWRY-------ILGFHRKKACNETSCHLADLPGNSCVVCELLKED 276
[Close]
BLAST of Ec-27_005950.1 vs. uniprot
Match: A0A1Q9D0R3_SYMMI (Caroteno-chlorophyll a-c-binding protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D0R3_SYMMI)

HSP 1 Score: 171 bits (434), Expect = 5.580e-43
Identity = 101/252 (40.08%), Postives = 132/252 (52.38%), Query Frame = 1 
Query:  490 LVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSH----GHKSCEVCHLLTRD 1233
            L      HE W+ +QH N+LLNP CQRLDR YGI +L++  +WVIA VL  YW+REV SML+  PY S  +   V +S++YH  K+  I LDA R WSPT+GIM+LL+DHWH  +    L+ L R  LQG+DT  H  IV D++            LH    V+ +VW +HA+ N  ++ STA LVVE                  SWR         + G   +  C  +  H       SC VC LL  D
Sbjct:   53 LAALLLLHEAWVTMQHGNVLLNPFCQRLDRKYGISMLQKGQHWVIASVLVMYWAREVASMLLCLPYISVYSQIAVFVSAIYHTVKMFNICLDAHRCWSPTLGIMKLLIDHWHFHTLGTQLVSLLRFVLQGYDTMVHVFIVSDLIHHGGLGTGYVWWLH----VLFLVWLLHAVLNQTSQQSTAKLVVE------------------SWRY--------ILGFHTKKACNDTSCHLAALPGNSCVVCELLKED 274
[Close]
BLAST of Ec-27_005950.1 vs. uniprot
Match: A0A7S3LJ98_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJ98_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.550e-35
Identity = 87/210 (41.43%), Postives = 123/210 (58.57%), Query Frame = 1 
Query:  487 WLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPY-------ASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVS------VVWAMHAIANLVTRVSTATLVVEVAKSLVGN 1077
            WL +  F HE W+ LQH N+L NPLCQRLDR YGI LL+   +W IAG L+AYW RE LSM +  P+       A   T  +V IS +YH  K   +  DA +R SPT GIMR+++D +++ + ++V+L   R+ LQGFDT  H LI+RD++  D  S   +  +    I+ +       +W +HA  N   R STA+++V+   SL  N
Sbjct:   15 WLFLLLFCHEYWVYLQHCNVLANPLCQRLDRQYGIALLKSNQHWAIAGTLSAYWCRESLSMFLCLPFLQRSNPGAISTTQYLVLISLIYHTIKSRGVRRDALQRQSPTYGIMRVVIDKFYLHTRQEVVLTAVRLFLQGFDTWIHFLILRDLLL-DSSSVSASASVSTPPIITTWLHAIFAIWVLHAAMNQYFRCSTASVMVQAWYSLTAN 223
[Close]
BLAST of Ec-27_005950.1 vs. uniprot
Match: A0A6U3TV35_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TV35_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.140e-35
Identity = 80/195 (41.03%), Postives = 119/195 (61.03%), Query Frame = 1 
Query:  484 AWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLLRRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKIILISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHALIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVVEVAKSL 1068
            +WL     AHE W+ LQH+N+L NPLCQ LDR YGI LLR   +W IAG L+AYW RE + M + +P+    T  +V  S +YH  K   + LDA RR+SP  GIMR+++D +H+ +  + +L   R+ LQG DT  HA+I++ +  +   ++E +  +   +  +S +W  HA  N   R STAT++V++  SL
Sbjct:   61 SWLATLLLAHEYWVYLQHSNVLANPLCQHLDRQYGIALLRSNQHWAIAGTLSAYWCRESMCMFLCTPFLPRHTQYLVLYSLVYHTIKSRGVRLDAIRRYSPQFGIMRIVIDKFHLHTTAEAILTAVRLLLQGGDTFIHAMIIKGLFVYLSSTSEMS--MLPMIHWLSFIWITHAAMNQYLRCSTATIMVQLWYSL 253
The following BLAST results are available for this feature:
BLAST of Ec-27_005950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LAY7_ECTSI2.670e-302100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPB7_9PHAE2.190e-25386.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836C6P6_9STRA2.420e-8854.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4KNY6_GUITH3.490e-5855.56Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A812V2L4_9DINO2.030e-4745.04CER3 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A812Q1W1_9DINO4.830e-4640.87Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]
A0A812Z067_9DINO2.270e-4542.62Hypothetical protein n=2 Tax=unclassified Symbiodi... [more]
A0A1Q9D0R3_SYMMI5.580e-4340.08Caroteno-chlorophyll a-c-binding protein n=1 Tax=S... [more]
A0A7S3LJ98_9STRA1.550e-3541.43Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6U3TV35_9STRA4.140e-3541.03Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5546228..5550600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score825.1
Seed ortholog evalue1.5e-236
Seed eggNOG ortholog2880.D8LAY7
Length1287
KEGG rclassRC02233
KEGG koko:K00485,ko:K14003
KEGG ReactionR08266
KEGG Pathwayko00982,ko01120,ko04141,map00982,map01120,map04141
Hectar predicted targeting categorysignal peptide
Gene idEc-27_005950.1
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
EC1.14.13.8
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005950Ec-27_005950Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5546098..5550600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005950.1Ec-27_005950.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5546228..5550600 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005950.1.1Ec-27_005950.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5546228..5546437 +
Ec-27_005950.1.2Ec-27_005950.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5547935..5548321 +
Ec-27_005950.1.3Ec-27_005950.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5548692..5548970 +
Ec-27_005950.1.4Ec-27_005950.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5549365..5549505 +
Ec-27_005950.1.5Ec-27_005950.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5549823..5549924 +
Ec-27_005950.1.6Ec-27_005950.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5550433..5550600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005950.1CDS:Ec-27_005950.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5546228..5546437 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005950.1 ID=Ec-27_005950.1|Name=Ec-27_005950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=429bp
MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQAD
ALAGLNDKLDRLTSKLESLTHQVEDFVDAGRQERGGPAGPPAARVEVGRG
VGQIDDQRGGTVSQADAESDLYDSSVEGEGEKKQEDRNGEEDGSSDGGTW
GWPRDGRRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLL
RRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKII
LISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHA
LIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVV
EVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHK
SCEVCHLLTRDKPAALAPPPHPTRKRVD*
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spliced messenger RNA

>Ec-27_005950.1 ID=Ec-27_005950.1|Name=Ec-27_005950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1287bp|location=Sequence derived from alignment at chr_27:5546228..5550600+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCGTGAAAGAGTCAGCGGTCTGACGCTGTTCATGTGGCGGCCTCG
TTGTCATGTCAAGGTGGCGATCCTTGTAGTCTGCTGCCTGGCGAGAGCAA
CAGCAGCCGCAGAAGCAGCGATCACAAGCAGCGAATCCTCCCAGGCGGAT
GCCCTCGCTGGTCTCAACGATAAACTCGACAGGTTAACCAGCAAACTTGA
GTCTCTGACGCACCAAGTGGAAGATTTCGTGGATGCCGGTCGACAAGAAC
GGGGAGGGCCCGCCGGACCACCGGCTGCTCGTGTCGAAGTGGGACGGGGG
GTCGGACAGATTGACGACCAGCGAGGGGGCACCGTTAGCCAAGCTGACGC
GGAATCAGATTTATACGACAGCAGTGTCGAGGGGGAGGGAGAAAAAAAGC
AGGAGGACAGGAACGGGGAGGAGGATGGCAGCAGCGATGGCGGCACGTGG
GGCTGGCCGCGAGATGGGCGCCGGTTTGGACCGGCCTGGTTGGTGGTGGC
GACGTTCGCGCACGAGGTGTGGCTGTTGCTGCAGCACGCCAACATCTTGC
TGAACCCGCTGTGCCAAAGGCTGGACAGAAGCTACGGCATTGGGCTGCTG
AGGCGAAGGTTGTACTGGGTTATCGCCGGCGTGCTGGCGGCCTACTGGTC
GCGGGAGGTGCTGTCCATGCTGATCGCATCTCCCTACGCCTCTCCTCTCA
CGCTGAAGATGGTGGCGATAAGCTCCTTGTACCACGTGGGAAAGATCATT
CTCATCTCACTGGACGCGCAGCGACGGTGGTCGCCGACGATGGGGATAAT
GCGGTTGCTCATGGACCACTGGCATATGTCCTCCTTCAAGGACGTGCTGC
TCTGTCTCAAGAGAATGTCGCTCCAGGGGTTTGACACGGCCACGCATGCC
CTCATCGTCCGGGACATGGTCCGCTGGGACGAGGAGTCGGCGGAAAGAAC
GCATGGACTTCACCGAAAACTGATCGTTGTTTCTGTCGTGTGGGCGATGC
ACGCCATCGCGAACCTGGTGACCAGGGTCTCCACGGCAACGTTGGTCGTG
GAAGTTGCCAAGAGTCTTGTCGGGAACTGGGGGAGTCCCAGCGGGAAAAG
GCCTCCGAGTTGGCGACAGAGAGGAGGCGGCATGTTCGGCGCGTTGGACG
GCGGGCGCGCGGAGTTCACTTGCACGACGAGCTGCTCGCATGGCCACAAG
AGTTGCGAAGTTTGCCACCTGCTCACGAGGGACAAGCCTGCCGCATTGGC
TCCCCCCCCCCATCCCACACGGAAACGCGTCGACTAA
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protein sequence of Ec-27_005950.1

>Ec-27_005950.1 ID=Ec-27_005950.1|Name=Ec-27_005950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=429bp
MPRERVSGLTLFMWRPRCHVKVAILVVCCLARATAAAEAAITSSESSQAD
ALAGLNDKLDRLTSKLESLTHQVEDFVDAGRQERGGPAGPPAARVEVGRG
VGQIDDQRGGTVSQADAESDLYDSSVEGEGEKKQEDRNGEEDGSSDGGTW
GWPRDGRRFGPAWLVVATFAHEVWLLLQHANILLNPLCQRLDRSYGIGLL
RRRLYWVIAGVLAAYWSREVLSMLIASPYASPLTLKMVAISSLYHVGKII
LISLDAQRRWSPTMGIMRLLMDHWHMSSFKDVLLCLKRMSLQGFDTATHA
LIVRDMVRWDEESAERTHGLHRKLIVVSVVWAMHAIANLVTRVSTATLVV
EVAKSLVGNWGSPSGKRPPSWRQRGGGMFGALDGGRAEFTCTTSCSHGHK
SCEVCHLLTRDKPAALAPPPHPTRKRVD*
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mRNA from alignment at chr_27:5546228..5550600+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005950.1 ID=Ec-27_005950.1|Name=Ec-27_005950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4373bp|location=Sequence derived from alignment at chr_27:5546228..5550600+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCTCGTGAAAGAGTCAGCGGTCTGACGCTGTTCATGTGGCGGCCTCG
TTGTCATGTCAAGGTGGCGATCCTTGTAGTCTGCTGCCTGGCGAGAGCAA
CAGCAGCCGCAGAAGCAGCGATCACAAGCAGCGAATCCTCCCAGGCGGAT
GCCCTCGCTGGTCTCAACGATAAACTCGACAGGTTAACCAGCAAACTTGA
GTCTCTGACGGTGAGTGGGTGATCCTCGCGCACGGCAACATAACGTGCGT
CCTTGGGACAAAGTCAGCAGCCATGTTTCGCCAGCGACGCTCGCGTGTCA
TTCTTCAGAGTCCGACCCGCTGTTAGTGTGGCGCAGCGTGTGTGTGTGTG
TGTGTGCGTGTGTTGTAAGCTACGCTTGCTTGTATAGGGATTCAAGCCGC
GGCTCCTTTGTACTGACTGCGCCTGGCCCTGTAGCTGAAGATCTCCGGTC
GAAGATGTTGGCAAGTGGTACGGATCACGTGCGACTGCTGCTGTCGCAGG
AAAAAACTCTCGAGAAAGCTCAGTGTCCTCACTGGAGGTCACTGAAAAGA
CTTCCACACATCCCAATCCACTATTGTGCTCATATCTCGAATGGGTAGTC
TTTCTGTGTGAGAGAACGTTTGTTTTCTAAAAAACGTAGACTGGGTCAAC
TTGATTGACTTGTATGCAATGTGTAGATAGCAGGTAGTCGTTTGGGTTGT
TGAAGGTACCTGGTAACGAGTCCGTGCGCCCGTCCGTTTTGCCAGAAGAA
AAACGTCACACAGGAGATAACCTTGGCCACCACACACGTGCCTTAACCCA
ACTTCCCCAATTGAATGCTTTATCCAACGTGTTTACTTGATCGAAAAACC
TTCGAAGGCTACTGTTGGTGATAATGCCTCTCTCCAAGGTCACTGCCGAT
GAAAAAAAGAGCCGCACAAAAAAACATTCGTGGTTGAATCGAGACCCAAC
TACAATTTTCTTCTCCCCTATCGCTTCCTCCACCGCTAGTTATAACAAAC
AGCAGGAGTAGAGGCGATATCCTCCCGCACACAAGAAGTGTAGAGAGGAG
TACAGCAGTACATGCATCGTCAATGGTGGTGTCTAGGAACGAGTGTGATG
TTGGTGTGATGCCTCTCTCGAAGGTCGCTGCCGAGATGGAAAAGCCGCTG
CAAACAAAAAAAGCAACAAGCGGTGAACGCAGACCCGACCAAACGTTCGT
CTCCTCTCGCTTCTTCGGCCGATAGCTAGCAGCAGTAGTGTAGGGCACAC
CCTGCTCCCGTTTCGCTATGGCTGTGGCGTGTGTCTCCCTCCCCCCTGGT
CCATGTCTGGCTCGGTCTGTCTTGCGTGAGAAACTACCTCTGGTTCCAAC
GTATTGCAAACCAGAAAATGGTGCCTCCTCGTTGCGAGGGGTTAGACGCT
TCCTACTTCAAGTTCGGCGCAGACCCTGTGCTGTTATATGTTATATGAGG
TCTCGTCGCCCCCCACATTTTGTGCAGCTGAGACCGTCCGGGTTATAGGG
CCTTTGTGATCGCTAGTGCTCCTCGCACAGACCACGACTTCATGTAAATA
TCACCACGAGTTCCGTCGTGAATATCTACCCGGAAACAACTTGCGATGCT
CGAGTCGAACAGTATTGTTGCTATCCTCCTCTCCCACTTCCTTCTCCAAC
TTCACGGGCACATTTCCCCCTCATCGCCTCCACGATGACAAACCTCGGCC
TTCCCAGCACCAAGTGGAAGATTTCGTGGATGCCGGTCGACAAGAACGGG
GAGGGCCCGCCGGACCACCGGCTGCTCGTGTCGAAGTGGGACGGGGGGTC
GGACAGATTGACGACCAGCGAGGGGGCACCGTTAGCCAAGCTGACGCGGA
ATCAGATTTATACGACAGCAGTGTCGAGGGGGAGGGAGAAAAAAAGCAGG
AGGACAGGAACGGGGAGGAGGATGGCAGCAGCGATGGCGGCACGTGGGGC
TGGCCGCGAGATGGGCGCCGGTTTGGACCGGCCTGGTTGGTGGTGGCGAC
GTTCGCGCACGAGGTGTGGCTGTTGCTGCAGCACGCCAACATCTTGCTGA
ACCCGCTGTGCCAAAGGCTGGACAGAAGCTACGGCATTGGGCTGGTAAGA
AGTTGAGCTCACAGCTGCTTTTCTTTTATTGAAAGTCAGTCTCGTGCGCG
AACGACAATGTCACGACCTGACCTGTGTTTCTCAAGGTTTTGCTAAGTTC
AGTGCCGCGAATTAGCGGCTGTTTGTCATCGTCCTCAGCTTGCATTGCCT
CCTGTGCTGCCGGGCGTGGCGAGCTGCTGATACGTCTGTTTGGCCTCCGG
TTGATGCAAGCAAATCTGTAGTCGACATAACGTCACATGTTTCCACCTGT
GAGACCGATGGGCCCTCCGCCCTGGACCTAAAACCAATTCCTGCGTGCTC
GGCCTGCTCACACACGTGCGTCGCGTGGCTGCTTCGTTGCCTCATGGCGT
GCTTGCTGCTGCAGCTGAGGCGAAGGTTGTACTGGGTTATCGCCGGCGTG
CTGGCGGCCTACTGGTCGCGGGAGGTGCTGTCCATGCTGATCGCATCTCC
CTACGCCTCTCCTCTCACGCTGAAGATGGTGGCGATAAGCTCCTTGTACC
ACGTGGGAAAGATCATTCTCATCTCACTGGACGCGCAGCGACGGTGGTCG
CCGACGATGGGGATAATGCGGTTGCTCATGGACCACTGGCATATGTCCTC
CTTCAAGGACGTGCTGCTCTGTCTCAAGAGAATGTCGCTCCAGGTAGGGA
ACAGGCGCGCGTTCCAGAACATTCCTCCGGCCCCTGCGCCGACAATACAC
GACCTGACCTTCGAGATCCGAAGTCCTGCTTTTTGAGAGAGTGTTCCCTA
CAGACTGATGCGGGAAATCGGCGAATCGAAGAACATATTTGCGTCACCTT
GGCGGTCAACTCTACCCAGTTGTGGTGTCCCATGTACCGATTGCCCTAGA
GCGACACCTAGCGCTCTGCCCCTTCCGGTTCATGTGAAAGCGGTCGAGAT
ACCATGTGTACCTCTTTCGATGCAGACCACATCAATACCATGTGCAGCTA
TGTATCGGCTGCCGTAGATGGGCCGAAGTTTATGCTTGGACATCGGCCCT
CTGATCCACATCGTCTGGGGGTGTCGCCTCCTTACAGGGGTTTGACACGG
CCACGCATGCCCTCATCGTCCGGGACATGGTCCGCTGGGACGAGGAGTCG
GCGGAAAGAACGCATGGACTTCACCGAAAACTGATCGTTGTTTCTGTCGT
GTGGGCGATGCACGCCATCGCGAACCTGGTGAGTGAACAACATCCGACAA
GGCGAAGAAACGGTTCAAGAGATTGGAGCCCGTGCGCACCAAAACGCAGG
TCGAGCGCGCTGCACCGGTACCAGTATGTTGCACCTGTGTCTGCCGAGGG
TTCCTTCCTGAATAGAGGATTTCCCCCCGTTCAAGACCACTTCTTCGGCA
ATTCATCATAGGGCCAACATACCGCCACGGCCCCACCGTTAGGAAGCAAG
CCTTGGGACCGCAGGTCACGATTGATGTGTGTAGCATTTGCCCTTACGCT
CCAGGTCACTGAGCTGATCGTACCCCCCCCGCGTGTCTATGTCAGGTGAC
CAGGGTCTCCACGGCAACGTTGGTCGTGGAAGTTGCCAAGAGTCTTGTCG
GGAACTGGGGGAGTCCCAGCGGGAAAAGGCCTCCGAGTTGGCGACAGGTG
AGTGTAGTGGTCACACCGGGGCTTCATTTATACGAGACACGAGGCGAGGA
TTTCGACCAACGGGCTGGGCATTCATGGGCATGTAGCGACGAGGTTTTGA
GGCGTCTGCCCGAACAATGTGCAGCATTGATCGGAAAGGGACTGCCACAG
ATCTTGCTGCGGTGTCTTCCGTCTCTACGTGGTGTATCAGAACGTCGCTG
GACGCCTCCTGGCCTCCGTTGGCCTTCGCAGTGTACTTCGGTATTCAACC
GGCTGTCGTGCGCGTGAAATCGCTTCATCCGTTGAAATTTTGGGGGTGGA
CGTGTTGCTGCGACATTTTGGTGCCAGTTCGCAAGTGTTTTTTATTGAGT
CTTTGAGGGGGAAGACCCTGGTTCTAAAAGGTGAAGAACAAGGTGATGTG
GGTTGCAGCCATCGTCCCTTCATTGCTTTCTGCCGCCATGGCTCGGCATG
AATCATGGTAAAAACTGCAATCTGTAATGCCTCCCCCGCTTCCGAGCTGT
CACAGAGAGGAGGCGGCATGTTCGGCGCGTTGGACGGCGGGCGCGCGGAG
TTCACTTGCACGACGAGCTGCTCGCATGGCCACAAGAGTTGCGAAGTTTG
CCACCTGCTCACGAGGGACAAGCCTGCCGCATTGGCTCCCCCCCCCCATC
CCACACGGAAACGCGTCGACTAA
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Coding sequence (CDS) from alignment at chr_27:5546228..5550600+

>Ec-27_005950.1 ID=Ec-27_005950.1|Name=Ec-27_005950.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1287bp|location=Sequence derived from alignment at chr_27:5546228..5550600+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCTCGTGAAAGAGTCAGCGGTCTGACGCTGTTCATGTGGCGGCCTCG
TTGTCATGTCAAGGTGGCGATCCTTGTAGTCTGCTGCCTGGCGAGAGCAA
CAGCAGCCGCAGAAGCAGCGATCACAAGCAGCGAATCCTCCCAGGCGGAT
GCCCTCGCTGGTCTCAACGATAAACTCGACAGGTTAACCAGCAAACTTGA
GTCTCTGACGCACCAAGTGGAAGATTTCGTGGATGCCGGTCGACAAGAAC
GGGGAGGGCCCGCCGGACCACCGGCTGCTCGTGTCGAAGTGGGACGGGGG
GTCGGACAGATTGACGACCAGCGAGGGGGCACCGTTAGCCAAGCTGACGC
GGAATCAGATTTATACGACAGCAGTGTCGAGGGGGAGGGAGAAAAAAAGC
AGGAGGACAGGAACGGGGAGGAGGATGGCAGCAGCGATGGCGGCACGTGG
GGCTGGCCGCGAGATGGGCGCCGGTTTGGACCGGCCTGGTTGGTGGTGGC
GACGTTCGCGCACGAGGTGTGGCTGTTGCTGCAGCACGCCAACATCTTGC
TGAACCCGCTGTGCCAAAGGCTGGACAGAAGCTACGGCATTGGGCTGCTG
AGGCGAAGGTTGTACTGGGTTATCGCCGGCGTGCTGGCGGCCTACTGGTC
GCGGGAGGTGCTGTCCATGCTGATCGCATCTCCCTACGCCTCTCCTCTCA
CGCTGAAGATGGTGGCGATAAGCTCCTTGTACCACGTGGGAAAGATCATT
CTCATCTCACTGGACGCGCAGCGACGGTGGTCGCCGACGATGGGGATAAT
GCGGTTGCTCATGGACCACTGGCATATGTCCTCCTTCAAGGACGTGCTGC
TCTGTCTCAAGAGAATGTCGCTCCAGGGGTTTGACACGGCCACGCATGCC
CTCATCGTCCGGGACATGGTCCGCTGGGACGAGGAGTCGGCGGAAAGAAC
GCATGGACTTCACCGAAAACTGATCGTTGTTTCTGTCGTGTGGGCGATGC
ACGCCATCGCGAACCTGGTGACCAGGGTCTCCACGGCAACGTTGGTCGTG
GAAGTTGCCAAGAGTCTTGTCGGGAACTGGGGGAGTCCCAGCGGGAAAAG
GCCTCCGAGTTGGCGACAGAGAGGAGGCGGCATGTTCGGCGCGTTGGACG
GCGGGCGCGCGGAGTTCACTTGCACGACGAGCTGCTCGCATGGCCACAAG
AGTTGCGAAGTTTGCCACCTGCTCACGAGGGACAAGCCTGCCGCATTGGC
TCCCCCCCCCCATCCCACACGGAAACGCGTCGACTAA
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Synonyms
The feature 'Ec-27_005950.1' has the following synonyms
Synonym
Esi0000_0095
Esi_0000_0095