Ec-27_005870.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005870.1
Unique NameEc-27_005870.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length194
Homology
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BLAST of Ec-27_005870.1 vs. uniprot
Match: D8LAZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ2_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 1.320e-125
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 1 
Query:    1 MGSIFSCVTEEDKLDKHEQERLDLLKKGERFGRRKMVAMGVSLGSEPAMVRLSDDQSTVSWASADAPTFGSVKVTSVQNVKPAGATGLVLLGKGNSKELELETADAATRDLWVIALQEVVERSKMSGKHNEAELEAQAQELSENKAEYWATRRKELHDVEAAAAERKKKYAGAGMQFTAQALANKSGSFKSQG 579
            MGSIFSCVTEEDKLDKHEQERLDLLKKGERFGRRKMVAMGVSLGSEPAMVRLSDDQSTVSWASADAPTFGSVKVTSVQNVKPAGATGLVLLGKGNSKELELETADAATRDLWVIALQEVVERSKMSGKHNEAELEAQAQELSENKAEYWATRRKELHDVEAAAAERKKKYAGAGMQFTAQALANKSGSFKSQG
Sbjct:    1 MGSIFSCVTEEDKLDKHEQERLDLLKKGERFGRRKMVAMGVSLGSEPAMVRLSDDQSTVSWASADAPTFGSVKVTSVQNVKPAGATGLVLLGKGNSKELELETADAATRDLWVIALQEVVERSKMSGKHNEAELEAQAQELSENKAEYWATRRKELHDVEAAAAERKKKYAGAGMQFTAQALANKSGSFKSQG 193
The following BLAST results are available for this feature:
BLAST of Ec-27_005870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAZ2_ECTSI1.320e-125100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5437094..5440951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.2
Seed ortholog evalue7.4e-98
Seed eggNOG ortholog2880.D8LAZ2
Length582
Hectar predicted targeting categoryother localisation
Gene idEc-27_005870.1
EggNOG OGs2DXZQ@1,2S516@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005870Ec-27_005870Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5437094..5440951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005870.1Ec-27_005870.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5437094..5440951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005870.1.5Ec-27_005870.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5437094..5437240 -
Ec-27_005870.1.4Ec-27_005870.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5437834..5437932 -
Ec-27_005870.1.3Ec-27_005870.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5438370..5438486 -
Ec-27_005870.1.2Ec-27_005870.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5439095..5439231 -
Ec-27_005870.1.1Ec-27_005870.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5440870..5440951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005870.1CDS:Ec-27_005870.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5437094..5437240 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005870.1 ID=Ec-27_005870.1|Name=Ec-27_005870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=194bp
MGSIFSCVTEEDKLDKHEQERLDLLKKGERFGRRKMVAMGVSLGSEPAMV
RLSDDQSTVSWASADAPTFGSVKVTSVQNVKPAGATGLVLLGKGNSKELE
LETADAATRDLWVIALQEVVERSKMSGKHNEAELEAQAQELSENKAEYWA
TRRKELHDVEAAAAERKKKYAGAGMQFTAQALANKSGSFKSQG*
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spliced messenger RNA

>Ec-27_005870.1 ID=Ec-27_005870.1|Name=Ec-27_005870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=582bp|location=Sequence derived from alignment at chr_27:5437094..5440951- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCGATCTTCAGCTGCGTGACCGAAGAGGACAAGCTCGATAAGCA
CGAGCAGGAGAGGCTTGACCTGCTCAAGAAAGGAGAGCGTTTCGGGAGGC
GGAAGATGGTGGCCATGGGCGTGTCGCTGGGGTCGGAGCCTGCGATGGTT
CGCCTCAGCGACGATCAGTCGACGGTTTCGTGGGCGAGTGCGGATGCGCC
CACCTTCGGGAGCGTCAAGGTAACCAGCGTGCAGAACGTCAAGCCTGCGG
GTGCAACCGGACTGGTCTTGCTCGGCAAGGGTAACTCCAAGGAGCTGGAG
CTTGAGACGGCTGACGCAGCCACCAGGGATTTATGGGTGATCGCCCTTCA
AGAAGTGGTGGAGCGGTCGAAGATGTCAGGGAAGCATAACGAGGCGGAAC
TTGAGGCTCAGGCGCAAGAACTTTCAGAGAACAAGGCGGAATATTGGGCC
ACCCGGCGGAAAGAGCTCCACGATGTGGAGGCGGCAGCGGCGGAGAGAAA
AAAGAAGTACGCCGGGGCCGGGATGCAGTTCACCGCCCAAGCCTTGGCGA
ACAAGAGCGGCAGCTTTAAGTCGCAAGGTTAG
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protein sequence of Ec-27_005870.1

>Ec-27_005870.1 ID=Ec-27_005870.1|Name=Ec-27_005870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=194bp
MGSIFSCVTEEDKLDKHEQERLDLLKKGERFGRRKMVAMGVSLGSEPAMV
RLSDDQSTVSWASADAPTFGSVKVTSVQNVKPAGATGLVLLGKGNSKELE
LETADAATRDLWVIALQEVVERSKMSGKHNEAELEAQAQELSENKAEYWA
TRRKELHDVEAAAAERKKKYAGAGMQFTAQALANKSGSFKSQG*
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mRNA from alignment at chr_27:5437094..5440951-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005870.1 ID=Ec-27_005870.1|Name=Ec-27_005870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3858bp|location=Sequence derived from alignment at chr_27:5437094..5440951- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCTCGATCTTCAGCTGCGTGACCGAAGAGGACAAGCTCGATAAGCA
CGAGCAGGAGAGGCTTGACCTGCTCAAGAAAGGTGAGCTGTGAAGGACAG
CGGTAGTAGCGGTTTGGCAGCAGCAGCAGCAGCAGCAGCAGCGGTTGAGG
AGAAAAAGAACGTGCACATGCACTTCTCATACGGCCAAATATACATATGG
CTGCCCTTGGCCGGGTTGCTTGGGCACCCTTCTGGTGCCAAGATGAGCCC
ACCAGGCCACGGCAGTAAACGACCCCAACGCAGATCATGGTCCTTGGACA
GCAGCGAGTGCGCAGGCCAGACACAGACAAAGCCAGCGGCGGCGGTTTTT
TGGCGGTGTCTTCGAACGGCAAATCACGTTCAGCACGAAAGGGGTACGCC
GAACGCACGACAGAAAACAGCTATTTTAAGCGTAAGGCGATCCCCGAGAT
GATGTGCTATTGATGTCAATTAATCGGTGCGTGGTCAGGCACCTCTCCCC
CCTCACCGTCCCGCTGGAGCAGCACGTGCTGCTGTACGGTAGCCCAGGCG
TGGGAGAATGCCGAGGGCGGCAGCAAAAATCACGACTCAATCCCAGCAGC
AGCAATCTCCACATTTGTGGTGGTGGTCTACAGCTAATAGTAGTACGTAG
CGTAGCCGTCGGCCAGTCAGTCACTGCACTGCCGCTGCTGCGCTGCGGCT
GTGGGGTGGTGCCCAGGCGCCAAGGCGCGCATAGGTGTCCCATCAGGTTT
ATCGATCAAGAAGCTTCTTCTGCTCCGGCGGATGTAGCCGCCGGCCGGCC
GGGCACTACAATTTGGTCCACGACTACGTACATATACCGAGAGAGGAGAG
TCGATGTCATCTGTGGATACATGCACTGCATGCATGCGTTGCATGGTTGT
AGGCACAGGCCAACCGGGGATAGCGGGGCCCGCTGCAGCAGCAGCAGCGG
GACGACTGGCATCAGGAGACTTCACTTACAAAGGCGGCAGGGGTAGGAGC
CAGAGAGCCGCGCTAGAAAAATATGGTGAACTTTGGAATCCCCAAAGTCT
AGGCGGCTTGACCTGCCGTTCGGCGCCGGCGGTCTTTTTGCGAAACGTCG
GTCGACATCTCGACATCAAAACTCGGAACCTCTTGCTTTCCGTGAATAGA
AAAAACACACGCGTGCGTGCAGTCTTCACGCCCCCGCCACACACACGACC
ACCCGCCATAAGGAACGGTCTCGAACGGGGCAGGAGATGCTGCTACATGT
ATGATGGTGTGGCTATTCACATGTTCGTTCTAGAGAATGGTTTGAGTGGA
GCTGTGGTTTGGACGTCATTGTACTCTGTACCATTAAGGAATAATAAAAA
CACAGAAAGACTCATTCGAGATAGATATACCCACAGCAGTCGAACGAGAT
GTTATAAAGTATGGCGGACAGCCGCGCCCCCCCCCCCCGTCTTCCCCGAA
ATCGCACTCGCTCTGTTGTAGTCTACACACCCAGCACAGATACATACATC
CAGCAGGTGGTCCTTCCCGATCGCTCGATCCAAGTTTTGCGTATGCATTC
CACTTCTGATGCATTTGTTAATCCTGAGCCTTCGTTTATTCTCTGCTGTG
GTTGGCCAGTTGGCCGTATCGGCGCTCTGTAGATGATAACATCGTGAGCT
GTGTGTTGTTGAAATGATACTGAACAAAAAAAATCGGGACGTTGTGCCAT
GGTAAATGAATGTACTACAGGAGAGCGTTTCGGGAGGCGGAAGATGGTGG
CCATGGGCGTGTCGCTGGGGTCGGAGCCTGCGATGGTTCGCCTCAGCGAC
GATCAGTCGACGGTTTCGTGGGCGAGTGCGGATGCGCCCACCTTCGGGAG
CGTCAAGGTATGCAATTTTTCGATTTTTAACAACATACAAGGAAAAATAA
TTACAAACACAGGAGAGACTACCCCCGTTTCGTGATATACCCACAACAGT
CGGACGGTTTTTGCTGTGTTTTTGTGTGTATTTTTGCTACGAAAATGACA
ACTAATTATCTCGTTTTTTGTTTTTTTTTTTATGTGCTTGAGGTAAGAAT
TCGTTTCCTCTCCGTCCGTGGATCTCAAGTCCGGGATAAATAAATCCCGC
GATAGGGTGATTGTGTGGTTGTACACACGCTTGGTCCTGGCGCGGCTTGC
AGCGATGATTCATTACCCTTGTGGGTGAGCGTTTATGGTGTTGATGGCTG
CTGTCGTTGTTGGCCATCGGCGCAAGTGGCCGTTGTCGTCGCTGCTGCTG
TAGTGGCCCCCTGTACCGGTCAAGGGGGGTCATGGTACTCCCGAGGATGT
CCGCGGGGGGGCTAGCTGGCTTGTTGTCCGTCAACAGAAGCAAAATTCGC
AGCCATGATGATTCAATGCTTGTTGTTCGCTATGTCTTTCATATCTTCCA
ATGTTCCTCTCTATCCCCCGCCGCATCTTTCTCTCTCACTTTCTTTCTCT
CTCCGTTCTTCTTAGGTAACCAGCGTGCAGAACGTCAAGCCTGCGGGTGC
AACCGGACTGGTCTTGCTCGGCAAGGGTAACTCCAAGGAGCTGGAGCTTG
AGACGGCTGACGCAGCCACCAGGGATTTATGGGTGAGTACCCGAAGAGGG
AGACGGGGTGAAAAGTGATAGTGACACTTGGTGGCATGGATAAGACACGC
GAACATATTTGAAGGGGGGGGCAGGAGGCCATAACGTTAGGTGGGGGGCA
CACGGATGCGGCGAGAAGGTGGTGGGGTGGGATACTGCCAGAACCCTTGA
CGTAATGTTTTGGCGAGACGGGGGGGTCCATTGGGGGGCTTTAGCGATAT
GAATTTTTGTTGGCTTTTTTGGCCATTGGCCATGTCTGATCTCTCTCCCT
CTATGCTTGGGTGGTGTTGGTTCTATAATAGTTTAGCCGTGCCTGATCTT
TCTCGCTCTTTGCTTGGTGTTGGTTATTATTCAGCCATGTCTGACCTCTC
TCTTATTTAGCCATGTCTGATGTCTCTCTCTCTCTATCTCTCTCTCGCTA
TGTTTGTCTCTCCGTCCAGGTGATCGCCCTTCAAGAAGTGGTGGAGCGGT
CGAAGATGTCAGGGAAGCATAACGAGGCGGAACTTGAGGCTCAGGCGCAA
GAACTTTCAGAGAACAAGGTAAAGGGAGTGCATAGCTGGTCGGGCGGCTT
GTGTTGCTTTGCTGCCGCTGTTGACGTTGCTGTTGCTGCTGCTGCTGCTG
CTCCTACGGTTGTTGCTATAATACTGTATTTTGTTAAATGGTAGTGGTGC
CGATGTAGTTGGTGTTGCTGTCGCTGTGCTGCTGCCGTTGTCGTTGTTAG
TGTTGTTTTAGGTGAGTACCAATTAGGTATTCGTACTGATCCGAAAGATG
AGGCAATGGAATTGCCGCTGCTCTGTTCACACGGCAAAAACCCAACAACT
AGCCAAGCAAGAGAGAATTGCCCGGGGAAGGTCTAAACTAGGTACGTGCG
AAACTGCTTGGATGGTACGCTTTAGCGGATGTGAGTTGAGAGAAGACATT
TTATCCATACTTGAGGTTCAGCGAGACTGGCGTTGACACCACCGGCCGCG
GACCCCCCCTTTTTTTTTCTCGTTTTTTCAAGAAGCCCTACGAAACCCGC
GCAACAATAAAAAAGACAGAAAAAATGTGAGTTTACTTACGTGTGCGGCC
CCCTGTTTTTATGAGCTCCATTACTGCCGTATTTATTTATTTTTTGTCGG
ATGTCCGCCAGGCGGAATATTGGGCCACCCGGCGGAAAGAGCTCCACGAT
GTGGAGGCGGCAGCGGCGGAGAGAAAAAAGAAGTACGCCGGGGCCGGGAT
GCAGTTCACCGCCCAAGCCTTGGCGAACAAGAGCGGCAGCTTTAAGTCGC
AAGGTTAG
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Coding sequence (CDS) from alignment at chr_27:5437094..5440951-

>Ec-27_005870.1 ID=Ec-27_005870.1|Name=Ec-27_005870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=582bp|location=Sequence derived from alignment at chr_27:5437094..5440951- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCTCGATCTTCAGCTGCGTGACCGAAGAGGACAAGCTCGATAAGCA
CGAGCAGGAGAGGCTTGACCTGCTCAAGAAAGGAGAGCGTTTCGGGAGGC
GGAAGATGGTGGCCATGGGCGTGTCGCTGGGGTCGGAGCCTGCGATGGTT
CGCCTCAGCGACGATCAGTCGACGGTTTCGTGGGCGAGTGCGGATGCGCC
CACCTTCGGGAGCGTCAAGGTAACCAGCGTGCAGAACGTCAAGCCTGCGG
GTGCAACCGGACTGGTCTTGCTCGGCAAGGGTAACTCCAAGGAGCTGGAG
CTTGAGACGGCTGACGCAGCCACCAGGGATTTATGGGTGATCGCCCTTCA
AGAAGTGGTGGAGCGGTCGAAGATGTCAGGGAAGCATAACGAGGCGGAAC
TTGAGGCTCAGGCGCAAGAACTTTCAGAGAACAAGGCGGAATATTGGGCC
ACCCGGCGGAAAGAGCTCCACGATGTGGAGGCGGCAGCGGCGGAGAGAAA
AAAGAAGTACGCCGGGGCCGGGATGCAGTTCACCGCCCAAGCCTTGGCGA
ACAAGAGCGGCAGCTTTAAGTCGCAAGGTTAG
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Synonyms
The feature 'Ec-27_005870.1' has the following synonyms
Synonym
Esi0000_0110
Esi_0000_0110