Ec-27_005820.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005820.1
Unique NameEc-27_005820.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length224
Homology
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BLAST of Ec-27_005820.1 vs. uniprot
Match: D8LAZ7_ECTSI (Transcription initiation factor TFIID subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAZ7_ECTSI)

HSP 1 Score: 359 bits (922), Expect = 1.100e-124
Identity = 187/189 (98.94%), Postives = 189/189 (100.00%), Query Frame = 1 
Query:  103 VRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVHDEAGEMDVDPEQAPSPLSGNRNKKAKTTPGLETKKPLTLKEKKEQEEANRAKAEAKAARRRLQAQNAKRG 669
            ++LLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVHDEAGEMDVDPEQAPSPLSGNRNKKAKTTPGLETKKPLTLKEKKEQEEANRAKAEAKAARRRLQAQNAKRG
Sbjct:    1 MQLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVHDEAGEMDVDPEQAPSPLSGNRNKKAKTTPGLETKKPLTLKEKKEQEEANRAKAEAKAARRRLQAQNAKRG 189
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BLAST of Ec-27_005820.1 vs. uniprot
Match: F4P4F0_BATDJ (Uncharacterized protein (Fragment) n=1 Tax=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) TaxID=684364 RepID=F4P4F0_BATDJ)

HSP 1 Score: 102 bits (253), Expect = 3.730e-24
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:   85 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQ 429
            RD K I  +L+ A V  YEPR++  L++   RY ++VL D++ +ADHAG  DL + D+RLA+  +      GPPSRE  +  A++ N IPLP+IP+KFG+RLPP +   T  N Q
Sbjct:    2 RDAKLISLILQAAEVDDYEPRIIPQLLEFAHRYVQDVLQDSQVFADHAGHKDLEVDDIRLAIESRVAHSFTGPPSRETMMELAEKKNCIPLPLIPEKFGLRLPPERNTLTKANFQ 116
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BLAST of Ec-27_005820.1 vs. uniprot
Match: A0A177WG97_BATDL (Uncharacterized protein n=1 Tax=Batrachochytrium dendrobatidis (strain JEL423) TaxID=403673 RepID=A0A177WG97_BATDL)

HSP 1 Score: 102 bits (253), Expect = 5.890e-23
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:   85 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQ 429
            RD K I  +L+ A V  YEPR++  L++   RY ++VL D++ +ADHAG  DL + D+RLA+  +      GPPSRE  +  A++ N IPLP+IP+KFG+RLPP +   T  N Q
Sbjct:   16 RDAKLISLILQAAEVDDYEPRIIPQLLEFAHRYVQDVLQDSQVFADHAGHKDLEVDDIRLAIESRVAHSFTGPPSRETMMELAEKKNCIPLPLIPEKFGLRLPPERNTLTKANFQ 130
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BLAST of Ec-27_005820.1 vs. uniprot
Match: A0A1S8VMC7_9FUNG (Uncharacterized protein n=3 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VMC7_9FUNG)

HSP 1 Score: 101 bits (251), Expect = 1.080e-22
Identity = 59/143 (41.26%), Postives = 84/143 (58.74%), Query Frame = 1 
Query:   85 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVHDEAGEMDVDPEQAPSPLS 513
            RD K +  +L+ A V  YEPR++  L++   RY ++VL D++ +ADHAG  +L + DVRLA+  +      GPPSRE  +  A++ N IPLP+IP+KFG+RLPP +   T  N Q      P VH     M     Q+ SPL+
Sbjct:   16 RDAKLVSLILQAADVDDYEPRLIPQLLEFAHRYVQDVLQDSQVFADHAGHKELEVDDVRLAIESRVAHSFTGPPSRETMMELAEKKNSIPLPLIPEKFGLRLPPERNTLTKANFQ----IIPKVHTSKRAMVGQLNQSISPLA 154
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BLAST of Ec-27_005820.1 vs. uniprot
Match: A0A151Z337_9MYCE (Transcription initiation factor TFIID subunit n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z337_9MYCE)

HSP 1 Score: 103 bits (256), Expect = 1.140e-22
Identity = 55/123 (44.72%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:   64 TKAALDQ-RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQ 429
            T+  LD+ RD + I  +L   GV SY+PRVV+ L++ M +Y  ++L D++ YA+H+G+T++ + DVRL+++ + +  S  PP RE  +  A+E N+IPLP IP+KFGV LPP +Y  T PN Q
Sbjct:   55 TQTNLDEPRDARIIKSILNTMGVQSYDPRVVNQLLEFMTKYVFDILQDSQVYAEHSGKTEMDVSDVRLSIQSRVNHTST-PPPREMVVGIAEEQNKIPLPAIPNKFGVFLPPDEYCITNPNYQ 176
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BLAST of Ec-27_005820.1 vs. uniprot
Match: A0A8J4V5C1_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V5C1_9MYCE)

HSP 1 Score: 103 bits (258), Expect = 4.520e-22
Identity = 63/156 (40.38%), Postives = 95/156 (60.90%), Query Frame = 1 
Query:   64 TKAALDQ-RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVHDEAGEMDVDPEQAPSPLSGNRNK 528
            T   LD+ RD + I  +LK  GV  ++PRVV+ L++ M +Y  EVL D+  Y++H+G++D+ + DVRL+++ + +     PP RE  +  ADE N+ PLP IP++FGV LPP +Y  T PN Q   +   PVH           QA +PLSGN+++
Sbjct:  167 TTTNLDEPRDSRVIKSILKTMGVQKHDPRVVNQLLEFMYKYVFEVLQDSIVYSEHSGKSDIDVSDVRLSIQSRVNYNITTPPPRELLLGIADEKNKTPLPQIPNRFGVFLPPDEYCLTNPNYQ--VNPPKPVH-----------QANAPLSGNQSR 309
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BLAST of Ec-27_005820.1 vs. uniprot
Match: A0A8H7PEA1_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PEA1_MORIS)

HSP 1 Score: 97.8 bits (242), Expect = 1.350e-21
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 1 
Query:   85 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEPP 453
            RD K I  LL+  GV  ++P+VV  L++   RYT +V  DA  YA+HAGR D+ + DV+LAV+ +       PP RE  +  A E N++PLP+IP+K+G+RLP  ++  T  N Q   +A PP
Sbjct:   17 RDAKIISLLLQSHGVHDFDPKVVHQLLEFAHRYTSDVFQDALVYAEHAGRQDIDLADVQLAVQGRVSHSFTSPPPREFLLELAQEKNKVPLPLIPEKYGIRLPHEKHCLTAINFQVLPNAPPP 139
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BLAST of Ec-27_005820.1 vs. uniprot
Match: UPI000644E8C7 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644E8C7)

HSP 1 Score: 100 bits (250), Expect = 1.380e-21
Identity = 53/123 (43.09%), Postives = 81/123 (65.85%), Query Frame = 1 
Query:   64 TKAALDQ-RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQ 429
            T+  LD+ RD + I  +LK  GV S++PRVV+ L++ M +Y  EVL D+  Y++H+GR+++ + D+RL+++ + +     PP RE  +  ++E NRIPLP IP KFGV LPP +Y    PN Q
Sbjct:  164 TQTNLDEPRDSRVIKNILKTMGVQSHDPRVVNQLLEFMFKYVYEVLQDSIAYSEHSGRSEIDISDIRLSIQSRVNFSFTQPPPRELLLSISEEKNRIPLPPIPQKFGVLLPPDEYCLNYPNYQ 286
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BLAST of Ec-27_005820.1 vs. uniprot
Match: A0A197JZG0_9FUNG (TFIID-31kDa-domain-containing protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JZG0_9FUNG)

HSP 1 Score: 97.8 bits (242), Expect = 1.420e-21
Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = 1 
Query:   85 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEPPVH 459
            RD K I  +L+   V   + +V+  L++   RYT +V  DA  Y++HAGRTD+G+ DVRLA++ + +     PP +E  +  A+E NR+PLP+IP+K+G+RLP  ++  T  N Q      PP H
Sbjct:    8 RDAKVISLILQSLAVEDADQKVIHQLLEFAHRYTTDVFQDALLYSEHAGRTDVGLDDVRLAIQGRVNHSFTSPPPKEFLLELAEEKNRVPLPLIPEKYGIRLPHERHCLTAVNFQLIPELPPPTH 132
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BLAST of Ec-27_005820.1 vs. uniprot
Match: A0A261Y2B0_9FUNG (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y2B0_9FUNG)

HSP 1 Score: 94.4 bits (233), Expect = 5.960e-21
Identity = 47/115 (40.87%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:   85 RDEKSIVRLLKDAGVTSYEPRVVSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAGPPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQ 429
            RD K I  +L+   V  YEP+VV  L++   RYT +V  DA  Y++HAG+++L + D++LA++ + +     PP +E  +  ADE N+ PLP+IP+K+G+RLPP ++  T  N Q
Sbjct:   11 RDAKIISLILRSLNVDDYEPKVVHQLLEFAYRYTSDVFQDALVYSEHAGKSELDIDDIQLAIQGRVNHSFTTPPPKEFLLELADEKNKQPLPLIPEKYGIRLPPERHTLTAINYQ 125
The following BLAST results are available for this feature:
BLAST of Ec-27_005820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAZ7_ECTSI1.100e-12498.94Transcription initiation factor TFIID subunit n=2 ... [more]
F4P4F0_BATDJ3.730e-2445.22Uncharacterized protein (Fragment) n=1 Tax=Batrach... [more]
A0A177WG97_BATDL5.890e-2345.22Uncharacterized protein n=1 Tax=Batrachochytrium d... [more]
A0A1S8VMC7_9FUNG1.080e-2241.26Uncharacterized protein n=3 Tax=Batrachochytrium s... [more]
A0A151Z337_9MYCE1.140e-2244.72Transcription initiation factor TFIID subunit n=1 ... [more]
A0A8J4V5C1_9MYCE4.520e-2240.38Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A8H7PEA1_MORIS1.350e-2143.09Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
UPI000644E8C71.380e-2143.09hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A197JZG0_9FUNG1.420e-2140.00TFIID-31kDa-domain-containing protein n=1 Tax=Linn... [more]
A0A261Y2B0_9FUNG5.960e-2140.87Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5386299..5389684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.1
Seed ortholog evalue1.9e-97
Seed eggNOG ortholog2880.D8LAZ7
Preferred nameTAF9
Length672
KEGG koko:K02868,ko:K03133,ko:K05030,ko:K14535
KEGG TC1.A.13.1
KEGG Pathwayko03010,ko03022,ko04924,ko04972,ko05168,map03010,map03022,map04924,map04972,map05168
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
Gene idEc-27_005820.1
GOsGO:0000123,GO:0000124,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016569,GO:0016570,GO:0016573,GO:0016591,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022607,GO:0030880,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032947,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043933,GO:0043966,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046695,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070461,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1905368,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcriptional preinitiation complex assembly
EggNOG OGsCOG5094@1,KOG3334@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03021,ko03036,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005820Ec-27_005820Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5386299..5389684 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005820.1Ec-27_005820.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5386299..5389684 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005820.1.1Ec-27_005820.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5386299..5386406 +
Ec-27_005820.1.2Ec-27_005820.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5387788..5387857 +
Ec-27_005820.1.3Ec-27_005820.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5388156..5388292 +
Ec-27_005820.1.4Ec-27_005820.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5388805..5388963 +
Ec-27_005820.1.5Ec-27_005820.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5389487..5389684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005820.1CDS:Ec-27_005820.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5386299..5386406 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005820.1 ID=Ec-27_005820.1|Name=Ec-27_005820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=224bp
MASKSKKILLSGEPLHQAQARTKAALDQRDEKSIVRLLKDAGVTSYEPRV
VSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAG
PPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEP
PVHDEAGEMDVDPEQAPSPLSGNRNKKAKTTPGLETKKPLTLKEKKEQEE
ANRAKAEAKAARRRLQAQNAKRG*
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spliced messenger RNA

>Ec-27_005820.1 ID=Ec-27_005820.1|Name=Ec-27_005820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=672bp|location=Sequence derived from alignment at chr_27:5386299..5389684+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTAAATCGAAGAAGATTTTGTTGTCAGGAGAGCCTCTCCACCA
AGCCCAGGCCCGAACAAAGGCGGCTTTGGACCAGCGGGACGAGAAATCGA
TTGTCAGGCTTCTTAAGGATGCAGGGGTGACATCCTACGAGCCTAGGGTG
GTGAGCCACCTGGTGGATCGGATGCGCAGATATACGCGCGAGGTGTTGAT
TGATGCGAGGGACTACGCTGACCACGCCGGGAGAACCGACCTCGGCATGC
AGGACGTGCGATTAGCCGTGCGCAAGAAGCAGGATGCGTTATCCGCCGGC
CCTCCCTCACGAGAGGACCAAATACGACAGGCCGACGAGGTCAACCGGAT
ACCGTTGCCGGTAATCCCCGACAAGTTCGGGGTGCGATTGCCGCCCTTCC
AATACCAAAACACGCTCCCCAACCTGCAGTGGGAAGCACACGCAGAACCG
CCAGTCCACGATGAAGCGGGCGAGATGGACGTGGACCCAGAGCAAGCTCC
GTCCCCGCTTAGCGGCAACCGCAACAAGAAGGCCAAGACTACCCCGGGGC
TGGAAACGAAGAAACCCCTTACTCTGAAAGAAAAGAAGGAGCAGGAGGAG
GCCAACAGGGCTAAGGCTGAAGCGAAGGCCGCGCGGAGACGACTGCAGGC
GCAAAACGCGAAGAGGGGTTGA
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protein sequence of Ec-27_005820.1

>Ec-27_005820.1 ID=Ec-27_005820.1|Name=Ec-27_005820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=224bp
MASKSKKILLSGEPLHQAQARTKAALDQRDEKSIVRLLKDAGVTSYEPRV
VSHLVDRMRRYTREVLIDARDYADHAGRTDLGMQDVRLAVRKKQDALSAG
PPSREDQIRQADEVNRIPLPVIPDKFGVRLPPFQYQNTLPNLQWEAHAEP
PVHDEAGEMDVDPEQAPSPLSGNRNKKAKTTPGLETKKPLTLKEKKEQEE
ANRAKAEAKAARRRLQAQNAKRG*
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mRNA from alignment at chr_27:5386299..5389684+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005820.1 ID=Ec-27_005820.1|Name=Ec-27_005820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3386bp|location=Sequence derived from alignment at chr_27:5386299..5389684+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTCTAAATCGAAGAAGATTTTGTTGTCAGGAGAGCCTCTCCACCA
AGCCCAGGCCCGAACAAAGGCGGCTTTGGACCAGCGGGACGAGAAATCGA
TTGTCAGGGTACGGGTCGGTGTTGTACAACTTTTTGTTGCTTTCGCTGCA
TTATGACTGCTGATCATCCGCACCCCGGGCAGAATTGTCCACGGCCAGCC
GAAGAGTGTGTACCATGTACGTAGTGTTGACAGCAGGGGTTGCAGTGGAA
ATCTGTTCGTAGTGGTTGGTACTGCGAATTTCGGTTCTTCGTGTTTGGGG
TTTCTCGCTTTTAGACCATCCCTTGCATAGGCACCGGCAGTACACAGAGT
ACGTAGCGCACAACAACCTTTGACGTCATGTAATTCCCACCGCCAGCTTC
ATGTCATGCTGGGGTGGCGGTTCGCCCGAGTACTGCTGTACACGTCTCTT
TGTCTTCCTTTCGTGCTACACCTGCTAATATATTGCATGTAGCTTTGCAG
TCCGTGTGTGGTTATGTGCATAGCCAACAACAATCCAGCGGCGCAGCCTA
CCTCCTAGCTGCCAAACCTCTTCCCAGTCTCCTTCTCCCCCCCCCCCCCC
GCTCTCTCCCTGTCTTTGGGCTCATGCGATGTGACAGCAGTACTTCGATC
ACCCAAGAGGCTCTTCACGAACTACTTCCAATGTATTCCCTCGACCTCTG
ACTCGTACAAACCACCTCCAACCTCCGCTTGTTAACAACTGCTGTCATAC
GCATTCTGTATGTGGGTACTGTATCTTGCAATTTTGGAACGAGTGCCCCT
GTCCTTCCCGCCCCCCTTTTTACCCCCTAGACCGGAGGAACGGGCTTCCT
ACTGTAGCCTTGGTTTGAAGTTCGTTCGTTGTCTTTCGTGCGTTCTGAAG
CGTGCTTTGAGGGCGTGGTGGGTTGTGCAGAACTCCTACAGAAAATGGAC
AAGCCAAGTACAGCAGTTGCAAGAGTTGCTCTGGTTCGTGAGTGCGAACT
CGACTTTTGGCGGGTCATATACGTATGCTACGCGTGGTCAATTTTGGACA
TGTGGTTTAACTTTGCTGCTCGGTCCCTCTCTCCATCGGGATAGCTCCCT
CTGGAAATGGGGGCTCTAGGGTAGCGGGTCTGTGGCAACGTGTTTTTTTT
ATCTAGCTTAGCGTACGTATTCGCGAAGCGAGCGGACGCTTCTGAGTTGC
TCCATAAAGAGGTGGTGTTAAGTTTGGGCTGAGAAACGGGCATGGATTTT
GCTGAACATAACATCCTCTGTTTTTCGTTGGTCTCCTCCGGTTCCAAAGA
ACGGCTTCTTCGGGTGGAACCGCCCCATATTATTTTCAAGCGATGCGCCC
CCCTGGGTTTCGATCCACCCCGCGCGTTGCCTGTTGTCCACCGTGGCCTT
TACAACAGGAGGTTGTTGACCGTACCCAGACTCTCCTCCCTCGTTCTTGC
CCGCGTCGAATGCATCGTGTTGTCTTCTCCGCGCTACAGCTTCTTAAGGA
TGCAGGGGTGACATCCTACGAGCCTAGGGTGGTGAGCCACCTGGTGGATC
GGATGCGCAGTAAGTTAGGTTGTTTCACAAGCAGCAGCAAAGTGCGGTAT
TGGTGGTCTTGGTCGAATGTTAACGACGCGTGCCCAGTGACGTGTGCGGG
CTCGGCACCGGTTTCACGCGGAAGCGCTACGTACCAAGCATCCCAATATT
CACTATTGTTTTCTTTCGGTTTCACAACAGTTTGCTTGCGGACGTTGGAC
TTGCCTTGTCAATTAGTTTGCGCACACACACCTTTCTCCGAATCAATCAA
ACCATACGCACATGCACGCGCATAACGTACCTGGCCTGATCACTCTCGTT
GTGCAAGGATATACGCGCGAGGTGTTGATTGATGCGAGGGACTACGCTGA
CCACGCCGGGAGAACCGACCTCGGCATGCAGGACGTGCGATTAGCCGTGC
GCAAGAAGCAGGATGCGTTATCCGCCGGCCCTCCCTCACGAGAGGTACGG
GAACGGCCCTTTTGCCGTATTCGCAAAACTCCGCACCCGGACAGTGGCCA
AACCCATTACAACATGGGCCAGCGTTTCCACATTGCGCTTGCGCCGCATG
TTACGAGGTGGTGCAGTTGCCACTTTTGACGCAAGAAATGTTTCCCGATG
TTGGCTACAGGGTTCTATCCCCACCCGTTTTTCGGGGTCCATGAATGGCG
TTCCAAGGCCCTGCCGCCATGGGGGCTGTTGGTTGAGCAATCTAACGCGC
GCGAATCCATACCCGTACTGGTCAAGCAAATAGCGAATGGCCCGCATGGT
CATGTGACAAACCTGGTCCAGTGAAAAACGGGCGTGCTTCGTCTCGGCTT
TGTAGGAACGCGAGGTCAATGGTCTAATGGCTACGACATGCACGGCTCTG
AGTACACACCCCCACTCCCCCACCCTCTGGCAATGTTGCAGGACTCCGCT
GTTATATATTTTCTCACGTCTTGTGCGTGAATCTGTTCGCCTGCCCTTCT
CCTAAGGACCAAATACGACAGGCCGACGAGGTCAACCGGATACCGTTGCC
GGTAATCCCCGACAAGTTCGGGGTGCGATTGCCGCCCTTCCAATACCAAA
ACACGCTCCCCAACCTGCAGTGGGAAGCACACGCAGAACCGCCAGTCCAC
GATGAAGCGGGCGAGGTAAGCCCTTCCCGAGGACCGTCCCATGCTTGTTC
GCCACCTCGTTCTCTCCAACGACTTTAGGCCTTTTGGGTGTTTACCCCTG
ACGTCAGATCCCCTTCTCTCTGCTTGCCTCGCGGGTATTGTTGCGTGGAT
TTTTCGTGTGTGCCTACCTACATAGTCTGGCGCGACCCACTTTGTTTTTG
CCGTGCACATGACCGTCCGATCGGTACATAAGGGTATTATTCAATTGTCG
TTCGGCGAGACAAGGCTGGCGCCGCAGAGAAAAGTGTCATGTGCTCCAGG
TATGACTCGGAACTTGTGCCGTGCATCAACACTACCTGTGCGGAATGCCA
ATCGCGCCACCTTCTTCTCGCACGTGCCTTGAAATATCGATAGTCTCTTC
TTCTTCGTGGCCTGTCTCTGTTTGCCCAATTCACTTCGCTGCTTGCCCTT
GCGGCTCCCTACTCCCAAGGCGTCATGTCGCCGCCGATCCGAGGAATTTC
TTCCCGAGCCAAACTTTCGCCCCAACCCCTCTCCACAGATGGACGTGGAC
CCAGAGCAAGCTCCGTCCCCGCTTAGCGGCAACCGCAACAAGAAGGCCAA
GACTACCCCGGGGCTGGAAACGAAGAAACCCCTTACTCTGAAAGAAAAGA
AGGAGCAGGAGGAGGCCAACAGGGCTAAGGCTGAAGCGAAGGCCGCGCGG
AGACGACTGCAGGCGCAAAACGCGAAGAGGGGTTGA
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Coding sequence (CDS) from alignment at chr_27:5386299..5389684+

>Ec-27_005820.1 ID=Ec-27_005820.1|Name=Ec-27_005820.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=672bp|location=Sequence derived from alignment at chr_27:5386299..5389684+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGTCTAAATCGAAGAAGATTTTGTTGTCAGGAGAGCCTCTCCACCA
AGCCCAGGCCCGAACAAAGGCGGCTTTGGACCAGCGGGACGAGAAATCGA
TTGTCAGGCTTCTTAAGGATGCAGGGGTGACATCCTACGAGCCTAGGGTG
GTGAGCCACCTGGTGGATCGGATGCGCAGATATACGCGCGAGGTGTTGAT
TGATGCGAGGGACTACGCTGACCACGCCGGGAGAACCGACCTCGGCATGC
AGGACGTGCGATTAGCCGTGCGCAAGAAGCAGGATGCGTTATCCGCCGGC
CCTCCCTCACGAGAGGACCAAATACGACAGGCCGACGAGGTCAACCGGAT
ACCGTTGCCGGTAATCCCCGACAAGTTCGGGGTGCGATTGCCGCCCTTCC
AATACCAAAACACGCTCCCCAACCTGCAGTGGGAAGCACACGCAGAACCG
CCAGTCCACGATGAAGCGGGCGAGATGGACGTGGACCCAGAGCAAGCTCC
GTCCCCGCTTAGCGGCAACCGCAACAAGAAGGCCAAGACTACCCCGGGGC
TGGAAACGAAGAAACCCCTTACTCTGAAAGAAAAGAAGGAGCAGGAGGAG
GCCAACAGGGCTAAGGCTGAAGCGAAGGCCGCGCGGAGACGACTGCAGGC
GCAAAACGCGAAGAGGGGTTGA
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Synonyms
The feature 'Ec-27_005820.1' has the following synonyms
Synonym
Esi0000_0119
Esi_0000_0119