Ec-27_005800.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005800.1
Unique NameEc-27_005800.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length55
Homology
The following BLAST results are available for this feature:
BLAST of Ec-27_005800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5377995..5378389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length395
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-27_005800.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005800Ec-27_005800Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5377995..5378389 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005800.1.1Ec-27_005800.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5377995..5378389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005800.1CDS:Ec-27_005800.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5377995..5378159 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0058003UTR:Ec-27_005800.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 5378160..5378389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005800.1Ec-27_005800.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5377995..5378159 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005800.1 ID=Ec-27_005800.1|Name=Ec-27_005800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=55bp
MHTKQTEGCYGRGVTSFFTFGLGDTLNVNLLAASYFAVRAPKRDYSQSEV
LVLL*
back to top

spliced messenger RNA

>Ec-27_005800.1 ID=Ec-27_005800.1|Name=Ec-27_005800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=395bp|location=Sequence derived from alignment at chr_27:5377995..5378389+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACACCAAGCAGACAGAGGGATGCTACGGTAGGGGGGTCACCTCATT
TTTCACTTTCGGGTTGGGAGACACACTCAACGTTAACCTCTTGGCCGCGT
CCTATTTTGCTGTACGAGCACCGAAACGGGACTACTCCCAGAGTGAAGTA
CTCGTGTTGTTGTAGATTTCGTCCCAAAAAGTGCGCCCGCCTACCGCGGT
AGCATCAGTCGACAGCAAGAGGAAGATGCAGGCACGAAGCACTGTTTCTT
TTCAACCGCCCTCCGAGCATCTTCCGGCAGAAAGTGACTCATTGACCAGC
TTCGGGCGTCTTTCTCTCCAAGTCGACAGCTCATTCTTTTTTTATGCATC
GTGAACCACGAGTGGACAAAACTGCTCTCTCTCTCTCTCTCTCTC
back to top

protein sequence of Ec-27_005800.1

>Ec-27_005800.1 ID=Ec-27_005800.1|Name=Ec-27_005800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=55bp
MHTKQTEGCYGRGVTSFFTFGLGDTLNVNLLAASYFAVRAPKRDYSQSEV
LVLL*
back to top

mRNA from alignment at chr_27:5377995..5378389+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005800.1 ID=Ec-27_005800.1|Name=Ec-27_005800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=395bp|location=Sequence derived from alignment at chr_27:5377995..5378389+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACACCAAGCAGACAGAGGGATGCTACGGTAGGGGGGTCACCTCATT
TTTCACTTTCGGGTTGGGAGACACACTCAACGTTAACCTCTTGGCCGCGT
CCTATTTTGCTGTACGAGCACCGAAACGGGACTACTCCCAGAGTGAAGTA
CTCGTGTTGTTGTAGATTTCGTCCCAAAAAGTGCGCCCGCCTACCGCGGT
AGCATCAGTCGACAGCAAGAGGAAGATGCAGGCACGAAGCACTGTTTCTT
TTCAACCGCCCTCCGAGCATCTTCCGGCAGAAAGTGACTCATTGACCAGC
TTCGGGCGTCTTTCTCTCCAAGTCGACAGCTCATTCTTTTTTTATGCATC
GTGAACCACGAGTGGACAAAACTGCTCTCTCTCTCTCTCTCTCTC
back to top

Coding sequence (CDS) from alignment at chr_27:5377995..5378389+

>Ec-27_005800.1 ID=Ec-27_005800.1|Name=Ec-27_005800.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=165bp|location=Sequence derived from alignment at chr_27:5377995..5378389+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCACACCAAGCAGACAGAGGGATGCTACGGTAGGGGGGTCACCTCATT
TTTCACTTTCGGGTTGGGAGACACACTCAACGTTAACCTCTTGGCCGCGT
CCTATTTTGCTGTACGAGCACCGAAACGGGACTACTCCCAGAGTGAAGTA
CTCGTGTTGTTGTAG
back to top
Synonyms
The feature 'Ec-27_005800.1' has the following synonyms
Synonym
Esi000_0766
Esi_000_0766