Ec-27_005720.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005720.1
Unique NameEc-27_005720.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length217
Homology
[Close]
BLAST of Ec-27_005720.1 vs. uniprot
Match: D8LB07_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB07_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 7.050e-59
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1 
Query:    1 MQRLLSQRQRHPRWPRRPLNDLHKAVERGDTERAVALLSSKKFNVDEGGGSMGVTPLMIAIFKGNLRMVKILLDEGCNLSITNDDGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAKANPLLVKPNAVGKNFTXXXXXXXXXXXXXXXXLIKQVGIRD 648
            MQRLLSQRQRHPRWPRRPLNDLHKAVERGDTERAVALLSSKKFNVDEGGGSMGVTPLMIAIFKGNLRMVKILLDEGCNLSITNDDGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAKANPLLVKPNAVGKNFTXXXXXXXXXXXXXXXXLIKQVGIRD
Sbjct:    1 MQRLLSQRQRHPRWPRRPLNDLHKAVERGDTERAVALLSSKKFNVDEGGGSMGVTPLMIAIFKGNLRMVKILLDEGCNLSITNDDGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAKANPLLVKPNAVGKNFTXXXXXXXXXXXXXXXXLIKQVGIRD 216
[Close]
BLAST of Ec-27_005720.1 vs. uniprot
Match: A0A7Y5C9B4_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C9B4_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 2.000e-5
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   43 PRRPLNDLHKAVERGDTERAVALLSSKKFNVDEGGGSMGVTPLMIAIFKGNLRMVKILLDEGCNLSITNDDGA 261
            P  P + L  AV  GD ++  +LL +    + E G   G TPL +A  KGN+ MVK+LL++G + ++ +D+GA
Sbjct:   37 PTDPASQLFAAVANGDADQVASLLDATPALISEVGAGGG-TPLHVAASKGNVEMVKLLLEKGADPTLLDDEGA 108
The following BLAST results are available for this feature:
BLAST of Ec-27_005720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB07_ECTSI7.050e-59100.00EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A7Y5C9B4_9BACT2.000e-538.36Ankyrin repeat domain-containing protein n=1 Tax=C... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5285321..5285971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score197.6
Seed ortholog evalue6e-48
Seed eggNOG ortholog2880.D8LB07
Length651
Hectar predicted targeting categoryother localisation
Gene idEc-27_005720.1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005720Ec-27_005720Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5285321..5285971 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005720.1.1Ec-27_005720.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5285321..5285971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005720.1CDS:Ec-27_005720.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5285321..5285971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005720.1Ec-27_005720.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5285321..5285971 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005720.1 ID=Ec-27_005720.1|Name=Ec-27_005720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=217bp
MQRLLSQRQRHPRWPRRPLNDLHKAVERGDTERAVALLSSKKFNVDEGGG
SMGVTPLMIAIFKGNLRMVKILLDEGCNLSITNDDGAGPLHLSAQGGKLS
ITRLLAERGAEIEASTWMSATPLHVASDEGHSEVVRALCEAGADVHTRKA
DRSTPLISAAIRGHANSTRELLPAKANPLLVKPNAVGKNFTPLDAAALHG
RAEVVRELIKQVGIRD*
back to top

spliced messenger RNA

>Ec-27_005720.1 ID=Ec-27_005720.1|Name=Ec-27_005720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=651bp|location=Sequence derived from alignment at chr_27:5285321..5285971+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGTCTCCTCTCACAACGACAGCGGCACCCCCGGTGGCCTCGACG
CCCCCTCAACGACCTGCACAAGGCCGTGGAGCGTGGCGACACCGAGCGCG
CGGTAGCCCTGCTGTCGAGCAAGAAGTTCAATGTCGATGAAGGTGGTGGC
TCGATGGGCGTGACCCCGCTCATGATTGCCATCTTCAAGGGCAACCTGCG
CATGGTCAAGATCCTTCTCGACGAAGGTTGCAACTTGTCGATAACCAACG
ATGACGGGGCTGGTCCTCTCCACCTCTCGGCTCAGGGGGGGAAGTTGAGT
ATAACGCGTTTACTGGCAGAAAGGGGCGCAGAGATAGAGGCGTCGACTTG
GATGAGCGCGACACCGCTTCACGTCGCTTCGGACGAAGGACACTCGGAGG
TGGTGAGAGCACTGTGCGAGGCAGGCGCGGACGTCCACACCAGAAAAGCG
GACAGGTCAACACCGCTCATCTCTGCGGCGATAAGAGGACACGCGAACTC
GACCAGGGAGCTTCTGCCCGCGAAAGCAAACCCGCTGCTGGTTAAGCCTA
ATGCTGTAGGTAAGAATTTCACTCCGCTGGATGCGGCAGCACTGCACGGG
CGGGCGGAGGTGGTGCGCGAGCTGATAAAGCAGGTCGGCATCAGAGACTG
A
back to top

protein sequence of Ec-27_005720.1

>Ec-27_005720.1 ID=Ec-27_005720.1|Name=Ec-27_005720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=217bp
MQRLLSQRQRHPRWPRRPLNDLHKAVERGDTERAVALLSSKKFNVDEGGG
SMGVTPLMIAIFKGNLRMVKILLDEGCNLSITNDDGAGPLHLSAQGGKLS
ITRLLAERGAEIEASTWMSATPLHVASDEGHSEVVRALCEAGADVHTRKA
DRSTPLISAAIRGHANSTRELLPAKANPLLVKPNAVGKNFTPLDAAALHG
RAEVVRELIKQVGIRD*
back to top

mRNA from alignment at chr_27:5285321..5285971+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005720.1 ID=Ec-27_005720.1|Name=Ec-27_005720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=651bp|location=Sequence derived from alignment at chr_27:5285321..5285971+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCGTCTCCTCTCACAACGACAGCGGCACCCCCGGTGGCCTCGACG
CCCCCTCAACGACCTGCACAAGGCCGTGGAGCGTGGCGACACCGAGCGCG
CGGTAGCCCTGCTGTCGAGCAAGAAGTTCAATGTCGATGAAGGTGGTGGC
TCGATGGGCGTGACCCCGCTCATGATTGCCATCTTCAAGGGCAACCTGCG
CATGGTCAAGATCCTTCTCGACGAAGGTTGCAACTTGTCGATAACCAACG
ATGACGGGGCTGGTCCTCTCCACCTCTCGGCTCAGGGGGGGAAGTTGAGT
ATAACGCGTTTACTGGCAGAAAGGGGCGCAGAGATAGAGGCGTCGACTTG
GATGAGCGCGACACCGCTTCACGTCGCTTCGGACGAAGGACACTCGGAGG
TGGTGAGAGCACTGTGCGAGGCAGGCGCGGACGTCCACACCAGAAAAGCG
GACAGGTCAACACCGCTCATCTCTGCGGCGATAAGAGGACACGCGAACTC
GACCAGGGAGCTTCTGCCCGCGAAAGCAAACCCGCTGCTGGTTAAGCCTA
ATGCTGTAGGTAAGAATTTCACTCCGCTGGATGCGGCAGCACTGCACGGG
CGGGCGGAGGTGGTGCGCGAGCTGATAAAGCAGGTCGGCATCAGAGACTG
A
back to top

Coding sequence (CDS) from alignment at chr_27:5285321..5285971+

>Ec-27_005720.1 ID=Ec-27_005720.1|Name=Ec-27_005720.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=651bp|location=Sequence derived from alignment at chr_27:5285321..5285971+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCAGCGTCTCCTCTCACAACGACAGCGGCACCCCCGGTGGCCTCGACG
CCCCCTCAACGACCTGCACAAGGCCGTGGAGCGTGGCGACACCGAGCGCG
CGGTAGCCCTGCTGTCGAGCAAGAAGTTCAATGTCGATGAAGGTGGTGGC
TCGATGGGCGTGACCCCGCTCATGATTGCCATCTTCAAGGGCAACCTGCG
CATGGTCAAGATCCTTCTCGACGAAGGTTGCAACTTGTCGATAACCAACG
ATGACGGGGCTGGTCCTCTCCACCTCTCGGCTCAGGGGGGGAAGTTGAGT
ATAACGCGTTTACTGGCAGAAAGGGGCGCAGAGATAGAGGCGTCGACTTG
GATGAGCGCGACACCGCTTCACGTCGCTTCGGACGAAGGACACTCGGAGG
TGGTGAGAGCACTGTGCGAGGCAGGCGCGGACGTCCACACCAGAAAAGCG
GACAGGTCAACACCGCTCATCTCTGCGGCGATAAGAGGACACGCGAACTC
GACCAGGGAGCTTCTGCCCGCGAAAGCAAACCCGCTGCTGGTTAAGCCTA
ATGCTGTAGGTAAGAATTTCACTCCGCTGGATGCGGCAGCACTGCACGGG
CGGGCGGAGGTGGTGCGCGAGCTGATAAAGCAGGTCGGCATCAGAGACTG
A
back to top
Synonyms
The feature 'Ec-27_005720.1' has the following synonyms
Synonym
Esi0000_0139
Esi_0000_0139