Ec-27_005680.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005680.1
Unique NameEc-27_005680.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length296
Homology
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: D8LB10_ECTSI (Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB10_ECTSI)

HSP 1 Score: 598 bits (1541), Expect = 4.140e-216
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 1 
Query:    1 MPSFAQVTSSLLVLALAAQASGRKIQEKGGLRLRNLAETDDEAAAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVSP 885
            MPSFAQVTSSLLVLALAAQASGRKIQEKGGLRLRNLAETDDEAAAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVSP
Sbjct:    1 MPSFAQVTSSLLVLALAAQASGRKIQEKGGLRLRNLAETDDEAAAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVSP 295
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: F6MHT6_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=F6MHT6_SACJA)

HSP 1 Score: 301 bits (772), Expect = 3.670e-99
Identity = 134/251 (53.39%), Postives = 184/251 (73.31%), Query Frame = 1 
Query:  127 AAAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYV 879
            AAAEWTYR T   G++PYGP DW+ GYPDC    Q+PI++AAD+          + F+P+EC S EL+F++D  VW++ F GC+D P+++++GE YNLLQ HIHSPSEH++GG+EH+AEIH VH+K+ T D LLVVG++F+ +DYG NVE+E +W+V+D+ +   +E F    Y ++P+ P F+ Y GSLTTPPCTEGV+WI+MS+P  MS  QLD +R +VAL + SKV E G TNRP Q LN R + +V
Sbjct:   38 AAAEWTYRRTSTNGQQPYGPSDWHKGYPDCGKKAQSPIDLAADLETVVKGSAYELKFYPNECKSDELLFQADERVWEILFGGCSDVPHVEFKGERYNLLQIHIHSPSEHMIGGSEHSAEIHWVHVKEGTEDQLLVVGVLFDTTDYGSNVEIEHLWDVLDIGETTTKEVFTTRIYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMSKMQLDEFRTSVALFDDSKVDEHGNTNRPGQSLNDRKIFFV 288
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: A0A872YNN4_SACJA (Carbonic anhydrase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A872YNN4_SACJA)

HSP 1 Score: 226 bits (577), Expect = 1.310e-69
Identity = 114/259 (44.02%), Postives = 161/259 (62.16%), Query Frame = 1 
Query:  112 ETDDEAAAEWTYRATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQN---TTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYV 879
            E ++ +  +WTYR     GE PY P DW +GYPDC G  Q+PIN++A+V       E  +  F +EC S EL F+++  VW++DFS CT    L + G  Y+LLQ HIHSPSEH++ G+ H AEIHLVH + +   T   LLV+G+  +  ++G NV LEP+W+V+      A+ + +   Y L+P+  +++ Y GSLTTPPC+E VRW++MS P  +   QLD +R +VA    S+V E   TNRP Q +NGR V  V
Sbjct:   40 EPEESSFPDWTYRRASHEGERPYSPSDWEIGYPDCGGDSQSPINLSANVGTLVEATEFNLELFGAECASKELDFEANGHVWEIDFSECTSTSNLSFDGGKYSLLQMHIHSPSEHMVAGSLHDAEIHLVHSRDDSDGTESELLVIGVFLDAKEHGWNVALEPLWDVLGSG---AKPRGVINPYELIPSDMAYSHYMGSLTTPPCSEIVRWVVMSTPTVIGDLQLDIFRDSVATATNSQVDERSNTNRPGQAINGRAVYIV 295
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: Q9SMD6_9PHAE (Carbonic anhydrase alpha type (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD6_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 2.600e-48
Identity = 74/143 (51.75%), Postives = 105/143 (73.43%), Query Frame = 1 
Query:  454 VLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVS 882
            ++GG+EH AEIH VH+K  T D LLV+G++F+ + YG NVE+E +W+V+D+ +   +E F+   Y ++P+ P F+ Y GSLTTPPCTEGV+WI+MS+P  M   QLD +R +VAL + SKV E+G TNRP Q LN RD+ +V+
Sbjct:    1 MIGGSEHEAEIHWVHVKAGTDDQLLVIGVLFDTTQYGSNVEIEHLWDVLDIGKPTTDEVFVTRVYDIMPSNPVFSHYMGSLTTPPCTEGVKWIVMSDPVTMGKMQLDEFRTSVALFDNSKVDEMGNTNRPRQSLNNRDIFFVN 143
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: A0A7S3XQ34_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ34_HETAK)

HSP 1 Score: 142 bits (358), Expect = 4.810e-37
Identity = 78/192 (40.62%), Postives = 112/192 (58.33%), Query Frame = 1 
Query:  184 PDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVM-----DLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSE 744
            P++W     DCAGT Q+PIN+      ++ +    +    S CN+  L+   ++  W+VD + C DA Y  ++G  Y L+QFH HSPSE+ +GG    AE+HLVH   +    LLV+G+MF+V DYG N      WN       D  + ++ E  +     +LPATPS+  ++GSLTTPPC+EGV WILMS+
Sbjct:   95 PENWDSVNDDCAGTSQSPINVV-QASPSSDLSGLQLTKAKSSCNAVYLI--DNYHTWKVDMTSCDDAYYATWKGTDYYLIQFHFHSPSENTIGGGYFDAEMHLVHA--SAEGELLVIGVMFDVVDYGGNHFFSQFWNNTWSDDPDWYRVVSLESNLDPYTEILPATPSYYHWNGSLTTPPCSEGVTWILMSQ 281
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: H6WB77_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB77_VAULI)

HSP 1 Score: 139 bits (351), Expect = 3.140e-36
Identity = 98/254 (38.58%), Postives = 123/254 (48.43%), Query Frame = 1 
Query:  193 WYLGYPDCAGTKQTPINIAADVMGT-ATMQEQ--AIAFFPSECNSTELVFKSDFAVWQVDFSG-CTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFE-VSDYGQNVELEPMWNVMDL---NQDIAEE---------------QFMAAA-----YSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDV 870
            W   YPDC G +Q+PINIA D++ T  T+     A  F    C   +L +K+D   W V F G C   P +   G  +NLLQFH+HS SEHV+GG  + AEIH VH        L VVG+M    SD   N+E    W  M      Q  A E                 M+A      YS+LPA  ++  Y GSLTTPPC+E V WI+M E   +S  QL+ +R  +   E   V   G   RP Q  NGR V
Sbjct:    2 WGALYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGACMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNVGNLEFAKYWEHMAYVSGKQQYASEIVEKSTATMVSATASSSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMV 255
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: H6WB76_VAULI (Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB76_VAULI)

HSP 1 Score: 137 bits (345), Expect = 1.570e-34
Identity = 104/282 (36.88%), Postives = 133/282 (47.16%), Query Frame = 1 
Query:  127 AAAEWTYRATGVVGEE-PYGPDDWYLGYPDCAGTKQTPINIAADVMGT-ATMQEQ--AIAFFPSECNSTELVFKSDFAVWQVDFSG-CTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFE-VSDYGQNVEL----EPMWNVMDLNQDIAE----EQFMAAA--------------------YSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDV 870
            A  +W+Y       E     PD W   YPDC G +Q+PINIA D++ T  T+     A  F    C   +L +K+D   W V F G C   P +   G  +NLLQFH+HS SEHV+GG  + AEIH VH        L VVG+M    SD   N+E     E M  V    +  +E    +  MA A                    YS+LPA  ++  Y GSLTTPPC+E V WI+M E   +S  QL+ +R  +   E   V   G   RP Q  NGR V
Sbjct:   55 AEFDWSYNYECNYEEHGQVAPDMWGYLYPDCLGVRQSPINIARDIVTTDCTLAPVTGAFVFDMGMCMLDDLDYKADGKGWTVTFDGYCQTTPTITINGAVFNLLQFHLHSVSEHVIGGGYYDAEIHFVHYSALDPTSLAVVGVMISSTSDNIGNLEFTKYAEHMAYVSGKQKYASEIMETDATMAPAATPSSMASSTSMSAMEQVNPYSMLPADGTYYNYLGSLTTPPCSETVTWIVMKEGITVSPDQLEAFRAGLMDPEFPLVDNYGNNARPPQPTNGRMV 336
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: A0A836C9F5_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F5_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.610e-34
Identity = 91/281 (32.38%), Postives = 147/281 (52.31%), Query Frame = 1 
Query:  118 DDEAAAEWTYRATGVVGEEPY---GPDDWYLG--YPDCAGTKQTPINIAADVM---GTATMQEQAIAFF----PSECNSTELVFKSDFAVWQVDFSGCTDA--PYLQYQG----ETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAA--------YSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVS 882
            DD  A +WTY      G+  Y    P DW+    Y  CAG +Q+PI+I    +   G ++  E   AF        C  ++LV  +  A+ ++ +  C D+  P LQY G     +Y L Q H+H+ SEH + G   AAE+HLVH+ +  +  +LV+ ++ +V++  +  E+   W +M  N+ +A  Q  +A         Y+LLP +  + TY GSLT PPCTE V +++++E   ++  QL  +R++  +  G  + + G+  RP+Q LNGR V   S
Sbjct:   77 DDPTALDWTYNPV-CYGDGSYTVLAPADWHKNEDYAACAGPRQSPIDIVTSTLNDLGCSSDNEYLPAFSWQLQSGSCPFSQLVPSTKHAL-ELSYEECDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGQFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLM--NEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSVATCS 353
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: A0A7S4D4V5_HETAK (Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4V5_HETAK)

HSP 1 Score: 133 bits (334), Expect = 5.790e-34
Identity = 76/198 (38.38%), Postives = 111/198 (56.06%), Query Frame = 1 
Query:  166 GEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFFPSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWN-----VMDLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSE 744
            GEE   P++WY    DCAG  Q+PIN+      T T+ +  +     +C+   LV   ++  W+VD S C  +    +    Y L+QFH HSPSE+ +GG    AE+HLVH   ++   LLV+G+MF+V DYG N   +  WN     V   + +++    +     +LPA  S+  ++GSLTTPPC+EGV WILMS+
Sbjct:   47 GEEACSPENWYAYAEDCAGESQSPINVVQASPST-TLSQLVLNKNNEDCDLLYLV--DNYHTWKVDMSECDGSYTTTWNDVDYELVQFHFHSPSENTIGGGYFDAEMHLVHADADSN--LLVIGVMFDVVDYGGNNFFKEFWNNTWSDVSTGDSEVSLSSTLDPYTEILPADLSYYHWNGSLTTPPCSEGVTWILMSQ 239
[Close]
BLAST of Ec-27_005680.1 vs. uniprot
Match: A0A835YV18_9STRA (Alpha carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV18_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.710e-33
Identity = 91/285 (31.93%), Postives = 152/285 (53.33%), Query Frame = 1 
Query:  118 DDEAAAEWTYRATGVVGEEPY---GPDDWYLG--YPDCAGTKQTPINIAADVMGTATMQEQAIA---FFPS--------ECNSTELVFKSDFAVWQVDFSGCTDA--PYLQYQG----ETYNLLQFHIHSPSEHVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVMDLNQDIAEEQFMAAA--------YSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPNYMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVS 882
            DD  A +WTY      G+  Y    P DW+    Y  CAG +Q+PI+I      T+T++++  +   + P+         C  ++LV  +  A+ ++ + GC D+  P LQY G     +Y L Q H+H+ SEH + G   AAE+HLVH+ +  +  +LV+ ++ +V++  +  E+   W +M  N+ +A  Q  +A         Y+LLP +  + TY GSLT PPCTE V +++++E   ++  QL  +R++  +  G  + + G+  RP+Q LNGR V   S
Sbjct:  381 DDPTALDWTYNPV-CYGDGSYTVLAPADWHKNEEYAACAGPRQSPIDIV-----TSTLEDRCSSDNEYLPAFSWQLQSGSCPFSQLVPSTKHAL-ELSYEGCDDSTRPGLQYSGALGHSSYKLKQVHLHAGSEHSVDGEFGAAELHLVHINEADSTDILVLAVLLDVAETSEEPEVYKYWTLM--NEAVANYQGESAIDMNAISDPYALLPESKQYYTYQGSLTIPPCTETVTFVILAERTQVADAQLQAFRQSQTIAFGPTLDQSGSNARPLQPLNGRSVATCS 656
The following BLAST results are available for this feature:
BLAST of Ec-27_005680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB10_ECTSI4.140e-216100.00Carbonic anhydrase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
F6MHT6_SACJA3.670e-9953.39Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
A0A872YNN4_SACJA1.310e-6944.02Carbonic anhydrase n=1 Tax=Saccharina japonica Tax... [more]
Q9SMD6_9PHAE2.600e-4851.75Carbonic anhydrase alpha type (Fragment) n=1 Tax=L... [more]
A0A7S3XQ34_HETAK4.810e-3740.63Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
H6WB77_VAULI3.140e-3638.58Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
H6WB76_VAULI1.570e-3436.88Carbonic anhydrase n=1 Tax=Vaucheria litorea TaxID... [more]
A0A836C9F5_9STRA5.610e-3432.38Alpha carbonic anhydrase n=1 Tax=Tribonema minus T... [more]
A0A7S4D4V5_HETAK5.790e-3438.38Carbonic anhydrase (Fragment) n=1 Tax=Heterosigma ... [more]
A0A835YV18_9STRA7.710e-3331.93Alpha carbonic anhydrase n=1 Tax=Tribonema minus T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5244299..5253548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score602.1
Seed ortholog evalue1.4e-169
Seed eggNOG ortholog2880.D8LB10
Length888
KEGG rclassRC02807
KEGG koko:K01672,ko:K01674,ko:K04413
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categorysignal peptide
Gene idEc-27_005680.1
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG3338@1,KOG0382@2759
EC2.7.11.1,4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005680Ec-27_005680Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5244299..5253548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005680.1Ec-27_005680.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5244299..5253548 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005680.1.12Ec-27_005680.1.12Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5244299..5244373 -
Ec-27_005680.1.11Ec-27_005680.1.11Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5244611..5244706 -
Ec-27_005680.1.10Ec-27_005680.1.10Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5245059..5245199 -
Ec-27_005680.1.9Ec-27_005680.1.9Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5245432..5245551 -
Ec-27_005680.1.8Ec-27_005680.1.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5246056..5246154 -
Ec-27_005680.1.7Ec-27_005680.1.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5246445..5246528 -
Ec-27_005680.1.6Ec-27_005680.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5247129..5247213 -
Ec-27_005680.1.5Ec-27_005680.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5247767..5247833 -
Ec-27_005680.1.4Ec-27_005680.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5248227..5248251 -
Ec-27_005680.1.3Ec-27_005680.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5252207..5252214 -
Ec-27_005680.1.2Ec-27_005680.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5252847..5252874 -
Ec-27_005680.1.1Ec-27_005680.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5253489..5253548 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005680.1CDS:Ec-27_005680.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5244299..5244373 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005680.1 ID=Ec-27_005680.1|Name=Ec-27_005680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=296bp
MPSFAQVTSSLLVLALAAQASGRKIQEKGGLRLRNLAETDDEAAAEWTYR
ATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFF
PSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSE
HVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVM
DLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPN
YMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVSP*
back to top

spliced messenger RNA

>Ec-27_005680.1 ID=Ec-27_005680.1|Name=Ec-27_005680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=888bp|location=Sequence derived from alignment at chr_27:5244299..5253548- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCCTTCGCGCAAGTGACCTCGTCTTTGCTGGTGCTGGCCCTTGC
AGCACAGGCGAGCGGCCGCAAGATCCAAGAGAAGGGAGGGCTCCGGCTAC
GCAACCTCGCCGAGACCGACGACGAAGCTGCCGCGGAATGGACTTACCGC
GCCACGGGAGTCGTCGGGGAAGAGCCGTACGGCCCAGACGACTGGTACTT
GGGGTACCCCGACTGCGCAGGGACGAAACAGACCCCTATCAACATCGCCG
CAGACGTCATGGGCACGGCTACCATGCAGGAGCAGGCCATCGCGTTCTTC
CCTAGCGAGTGCAATTCGACCGAGTTGGTCTTCAAGTCGGACTTCGCCGT
GTGGCAGGTTGACTTCTCCGGGTGCACCGACGCACCCTACCTCCAGTACC
AGGGCGAGACCTACAACCTGCTCCAGTTCCACATCCACTCGCCCTCCGAG
CACGTGCTCGGTGGAGCAGAACACGCGGCGGAGATCCACCTGGTTCACCT
CAAGCAGAACACCACCGACGGGTTGCTTGTAGTGGGGATCATGTTCGAAG
TCAGCGATTACGGCCAGAACGTGGAGCTGGAGCCCATGTGGAACGTGATG
GACTTGAACCAGGATATCGCAGAGGAGCAGTTCATGGCCGCGGCGTACTC
GCTCTTGCCCGCTACCCCTAGCTTCACCACCTACTCCGGGTCGCTCACCA
CCCCCCCGTGCACCGAGGGTGTGAGGTGGATCCTCATGAGCGAGCCCAAC
TACATGAGCACGTGGCAGCTGGACAACTACCGCCGCGCGGTTGCGTTGCA
CGAGGGCTCTAAGGTGAGCGAGGTGGGCGCCACCAACCGCCCGATTCAGG
AACTCAACGGTCGCGACGTTTTGTACGTGAGCCCTTAG
back to top

protein sequence of Ec-27_005680.1

>Ec-27_005680.1 ID=Ec-27_005680.1|Name=Ec-27_005680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=296bp
MPSFAQVTSSLLVLALAAQASGRKIQEKGGLRLRNLAETDDEAAAEWTYR
ATGVVGEEPYGPDDWYLGYPDCAGTKQTPINIAADVMGTATMQEQAIAFF
PSECNSTELVFKSDFAVWQVDFSGCTDAPYLQYQGETYNLLQFHIHSPSE
HVLGGAEHAAEIHLVHLKQNTTDGLLVVGIMFEVSDYGQNVELEPMWNVM
DLNQDIAEEQFMAAAYSLLPATPSFTTYSGSLTTPPCTEGVRWILMSEPN
YMSTWQLDNYRRAVALHEGSKVSEVGATNRPIQELNGRDVLYVSP*
back to top

mRNA from alignment at chr_27:5244299..5253548-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005680.1 ID=Ec-27_005680.1|Name=Ec-27_005680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=9250bp|location=Sequence derived from alignment at chr_27:5244299..5253548- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCTTCCTTCGCGCAAGTGACCTCGTCTTTGCTGGTGCTGGCCCTTGC
AGCACAGGCGGTGAGTGACGAGATGGTGTTCTGCTGCTTCGTAAAAGTAC
AGACCCGCACGTATGTATATCCCTGGACCGCGAACATTTCGAGGCATGCG
TATGCAACGGTGTCGGTACGTGTCTCGGAGCTACGGCGATGCTATGGTCG
CGTGCCTCAGCTCGTGTACGGGTAGCGGTGAAGGAACACTACCCCTCATG
GGTAGTGGACACGGCGAGGTTCTCGCGCTACATAGTCTTCGGCTGCTCAG
CTTGGAGCCGACACGCGTATCTAGCTATTTTGTTGTAGCTCAAATATCAA
AATATCCCGACGGCCCCAACATTGTTGTCGCGGACTGGCAAAGACCTCAC
GACCTTTCTGCTTTCTTGCTGCCTTCCTTCCCAGTGCCTACCTTGCCATG
AATCTCTGGATCCAAGCCGCGATGTATACGCCTTGCCCTCGCCCAATCCT
CTAACCGTGCCCCACTGCTGCTGCTGTTGCTGCTGCTGCTGTTGCTGCTG
CTGCTGCTCTTGTTTTCATGCATGCCGGCAATACGCATGTACGCGCGTGC
TTTGTCCCGCTCATGTTCTCGGGATCCGTCCATGCCTCTTTACGCCACGC
GACGTATTGCCACGCATCATTCAGAGCGGCCGCAAGATCCAAGAGAAGGG
AGGTGAGCTCGCGTGTGGCAGTCGTCGTTCCTACGAGCTCACGACGGACG
AAAGCGTTATGTGGTTGATTTTTATATTTTGCGCGGCAAGCCAGAGAAGT
ACACCATCTTCCGAGGTCCCTCTGGCTGCCGCCCAAGTTGGCCTGTCCGT
AGATATTAGTATCCGCCCGATGAGGTCAACACGGATATATGATGGCCCAC
TCTCTGCTCCTTCTCGCTGCAAGTGCCGTGCGCACGGCATCATCGTACGT
ACGAGCGAGAGCTGCTGAGCTAAGCAGGTCTCATGTATGCACGTGATTCG
CGGCATACGTGAGCTGCGGGATCGTTTTGTTCGTTCACTTCAGGTCCCTT
GATGATGCGTATCCGAATGCATACGTGGAACTCGGATATGTGCTATATGC
ATACGTGGGACGGCGGTGCATACGCACATTTTTTTTTGGTTTGAACATCT
ATACGCATGCGTGCATGAGTAAGATCCATACGCATGCGTGCATGAGTAAG
ATCGGTGTATTCCTCCCTAACCTCTTGGCTCCCCTTCTGCTTTCTTGTCC
CCCACTCCCGCGCACACGGCGCATTGCGGACTCCTCGCGAAATCGGTGTT
TCCTCTGCTTGCCGTTATGGCGCCTCTACTGAAGGGCTCCGGGTAAGAGG
AGATGAAAATTTCGAACACCTTGGCACAGGGATAGCATCCACCTTGTGTC
GGTTGTAGCAAAAGGCTTGATGTGCCCACCCCACGTTTTTTCTTGCATAT
TAAATATTCGTCAACCCTAAGTGGTATGCCCTTGTTGTCTTTGTAGAGAT
TGTAGTGCTTGATGTTTAGATGCTTGTTATCTCTCACACCCGGTTGGGGG
GAAAGAGCAGGGAGTGCCACGCGCACGCCAGCTGACAGCAGCTGGCGTGG
GGGCTCCGCACAATCATTCTCTGGTCGTACTACCCAACGCATACCTATGT
GCAGTGCACCTGAAACAGTCATCTCGTCTACAGATCCGACTACATACGCA
CTCACACGAACACCCTCCCTGGTTCTTTACACTAAAGTAACTAACCACTT
CTTCTGTGGGATACGTGCTTCCGCCACCTCAAGTCAGGTTTTTTCCGCAA
AAACAACAAATCAATAAAAACCTAAGGGGAAACCCGGCCACCGGGTCAAA
ACCCCTCCCTCCCAAGTATGGTACTACTAAAAAGCAAGATAGAGACGCAA
ACAGGATAACTCCGACAACGTCATCGATCCGGGTAACCTTCCCGCCACGT
TTCAATATCACCTTCTTCCCTAGTACCCAACAAAGTCCAAAAAGTCTGCA
GCCACTGCCACGATTTTACTCCCACAAAGCCCAAACAAAAGTCTGTTGCG
ATTTACTCCTACTGCCCTCCCCGCTCGACGAACAACTATCGATGATCTGA
GCACCTAACTTCCTCCCTCCCCCTTGATTCCGGCGCATCGCGTCGCCCCC
GGGGTCGGTGGTAAATGCTATCATCCCGCGACAGCTGTTTTGTCAAACAC
ATCAAGCCTGATAAGCCTTCTTGCAACAACTCTTGCTCCGACTCTCAGAA
ATTCAAACTTCAGCCTGCTCACACACAACTCTTAGACTCTCAGAAAAAAC
AAAGTTCCAATTCTCAACCGTCATACAGCACGCGTCGATATGGCTGCTCT
CCCTCACTCGAAGAAAACTGCGGTCCATCATGTCGTGCGATAACCTCCCT
CGCTCTTTGCTGCGAGTGGTACGCCACACACAATACCTCCTTCATTCAAC
GCTCGCGGAAAACACGCTTGACTATATACTGCATCGAGAACTTATCATTG
CTGAGGCTTCTTTTCCTCCTACAAGACAAACACAGTGATTCTCATCATGG
GGCTTCTCCCCTTCTACAAGACAAACACTGATATAGATTGTGGAGACGCC
TTGCTACTGCGAATCCCTCAATAAGGTGGATACGTCTGGTACATGGGTCC
ACACCTACCTGCAGCAACAACGGAAATGTCACCCACAGCAGTATAACGGT
GTCCTCCCCTCCCCATTTCCACCTCACGCACACAAGGTGATATATCTGGT
ACATGGGTCCACACCTACCAGCAGCAACAACGGAAATGTCACCTACATTT
GTGTCCTCCCCTCCCCATTTCCACCTCATGTTGACGCCAGCACAATTTCA
CCTACGCCGGTGTCTGCAACTTTTGATACACCGGGTCCCGTGTACCCCCT
TTTTGTCAGCCGACACGCTGGATACTGTTTTACCCCTGTGCGTGAGTTTT
CATCGACCGCGGGGAGCGCCTGTGCTGCATCCCCTCCTTTGATACACCGG
ATCCTGTGTACCCCTTCTCTTCAGCCGACACGCTGGATAGTGTTTTACCC
CTGTGCGTAAGTTTTCATCGGCTGTCGGGACCGCCTTTGCTGCATCCCCT
CATCTAATACACCTGGTCCTGTGCACCCCTTCTGTTCAACCTCCACGCTA
GATACTGGTTTACCTCTGTGCGTGAATTTTCATCGGTTGTGGGGAGCGCC
TATGCTGCATCCCCTCGTTTAGTACGCCTGGTCCTGCGTACCCCTTTTAT
TCTGCCCCAGACAAAGTTTTCATCGCCCGCGGACATCATGAAATGGAAGC
GCCTGTACCGCGAATCCCCATCATAGAGCGGCTGGTTTTTGGAGCCGAAT
TACCATCGTCGTACGAAACACCCGCGATAGCACGCCTGGATTTTACCATC
GAAAAAGACGAACAACAATTGCTCAACAAAACACCCACACTCAAGAATGG
AAACGCCTGAACCGCGAATCCCCTTTCGAAATCATCGTTGGTCGTATCAT
CGTAAGCGAAGCTACTATCACTCTACGAACACCAAATCAGAAAATGGAAA
CGCCTTAACCGCGAATCCCCTGTAGAAACTTTCGGTATCATTCGTCGCAA
GCAAAATCATTCAATATCACTCACGAACTCAACCAGAAAGAAGCGCCTCG
CGGTAACGCCGCGTTGTTGTTGGCCCTCGTTCAAAAGCATAGCAGATTTC
GCGGTGTCGCCCTTGCTCCTCTGCGGCAATTCCACGTTCACCAGAATCGC
CATGACTGCAATCCTCCAGTTCTCCCGGTGCGAGTACTTTTCCCGCGATC
AACAGGCTCGTGTGTTGTGCCGCCCGCTACTCCACCGCCGATGCCGCCGC
CCCTTTGCTGCCATTGTAACTAGACCGGTCCCAACAGGTCGCTCATGTTT
GTGGCCCCGGAGGATTACCCTCCAGGCTCCACCTCCTGACACCTCGTCCC
GTGTGCCCGGGGCAGTCAAACTATCCCCAGCAGCGCCTCTGCTAGAGCTG
CCAACCGTACAGAGAAAGTCGATGGTCTGGAACCCACCAAAACCACCATT
TGCAGGGACGTCAAACGCCCGCACCGGTACACCTTCTGTGCCCGATCTAC
TGCTGCTCTCTCTTCCAGCGGCGTCATCTGTTCTAACGCCAGCCGCAGCG
TGCAGCTCTGATAGGCAGCTGCCTGGCGGCGAGATTCCAACAATCCCACC
GCAGGATGCGGCGCGTCTTCCAGCACCGCCTGGCCCCCCTCGGCTTTCGC
AATCTGTTATTGCCTGCAGCAGCGATGACATCGTGTCCATCACCCCCTGC
ATCCAAAATCCCTGCGCATTGCTTCCCAGCGGGGGGCCAGCGGATGGGTG
GCCCGGGGGACCTACCCCCCCGACTCCACCGGGTGGCACCCCAAACCGTG
TGCCCGGCGCGGCTCCTCCGCGCCCTGCGGCGTTGCCAGCGCCGCTTGAC
TCCCCCTCTTCTGCCCCCGCCGCCCTGGCAGGCGGCATCTGAAGTTGCCC
TAGCTTCTCCATGACAGCCGACAGCACCTTGCTTTGCTCCTCGAGCTTCG
TGGACAGCTCCGCCACGCGCGTGTCGATCGTGGTTCCGCCGCTGTCGCTC
TCTGGGGTGTCGCCAGGCATAATCTCCGCAAAGGGGCTCCTTCGAAGGAA
ACTCTAGAGTATTCGTCAACCCTAAGTGGTATGCCCTTGTTGTCTTTGTA
GAGATTGTAGTGCTTGATGTTTAGATGCTTGTTATCTCTCACACCCGGTT
GGGGGGAAAGAGCAGGGAGTGCCACGCGCACGCCAGCTGACAGCAGCTGG
CGTGGGGGCTCCGCACAATCATTCTCTGGTCGTACTACCCAACGCATACC
TATGTGCAGTGCACCTGAAACAGTCATCTCGTCTACAGATCCGACTACAT
ACGCACTCACACGAACATTAAATGCGCCGTCGTGTCTAGCGTGGCCGTTC
AAACCGTGACATGTACGTGTGGCAGATAACCCATGCATAACTTGCATTTT
CGCAATTCATGTATCCACGGTTGGTGTCTTGTCGCCCGCACGTTCTATTA
TAGCTCCGACCTGCTGCGGCTGCGGCCGCCACTCGTTTAAGACTAGTGGG
AATAACTTTCGAAACGCCCTTTTCCGCTTCTCGTGTTCCTCTCATGATCT
TTTCTTGGGGGGTCTGGGACTGGGACCGCGCACTCTCTCCGAATCCGGAA
CGACATTTTTTTCTCCCTGGCCGGCAAACACTTGCCCCACGGCGTGTACC
GTGCGACCGACGCCTGTATCAAACAATTTCGCGTTCCGTCGTCGCAGCTA
CGCAACCTCGCCGAGACCGACGGTAAGGCTTGCGAGCGCCGGAACGAGCC
GATTGGTCGCTGCGTATACGCACATTACATACGGACGAGCACGCGCCTTC
TCTCGACGACTATTATTGTAGTGTTGCCTGTGTTTTCCAGAGTAGTTCTT
CTGATGTTTTCTTGTTGACAGAGTTGTGCTTGTTGTTTCTGTTGGTCTTG
GTTGTTTGGAGTCGCCAGTGTTTTTTTTGTTGGTTGGTTTTTGTTGGCAA
GTTGTTGTTTACAACAACCTAGTAGAGGGTATTCCCATCGTTCTCCGATG
CGCGGATCCCCTCCGCTGGATCCCTGTATGCGAGCATAAACAAGCGATGA
CCGTGACCTATTCTTTCCGTACCGTTTTCTCGTGCGTTGCATGAACCGTC
CCTGCACGTCATCAGACGAAGCTGCCGCGGAATGGACTTACCGCGCCACG
GGAGTCGTCGGGGAAGAGCCGTACGGCCCAGAGTGAGTATCCCATCACCT
TTTGCCCCCCTGTTCTTGGTTGTTGCTTTCTCCCCTTCGGCGTTATTTTC
GAAGTCCGTATGCTAGATTGTTGGTGATTGTTGCGTTCCTTCCGTCCTAT
TGTTGTGTCCTACATTATTGGTTAATTAATTGCTTTCCTCGGTCAGGCGT
CCGTCCATGCCCTGGAGAATAATTTGTCCCTGTGTCAAGTGTGTACTGTC
TTGTCGTGTATCGGGCTCAACGCTTAGTTGAACTCAGGGTGTACTTTGGT
GCGACGGCGAGGATGGGCTAGATCTATTCCCGCATTTGTCGTGCCCTGGT
TCGTGCTTGACTGCGGGAGAACCCGCAGATTGAGATGTTGTCATCCATGC
CTCTCCGCCTCTCTTGTTATGGACTACAGTCGTAAATAGTACACCCCAGA
GATCGAGCGCGCGTATTTCGTGTTTTTCTGGCCGGTCCCGTTTCCACAAC
GATGTTGCTCGTGTCCCTTTCATTTTTCCCTCACCCTACGTGATCCCGTT
TCGTGTTCCTCCTAATCCGATGAACCCACGTGCAGCGACTGGTACTTGGG
GTACCCCGACTGCGCAGGGACGAAACAGACCCCTATCAACATCGCCGCAG
ACGTCATGGGCACGGCTACCGTGAGTGGTGTTCAATTATATGCATAGAAT
GTTTGGGAACAAAATGTTGATGGAAGTCGAGCAGCATGTGGATGTCGAGC
ACGCAAACGAAGAAATACACCAGCGTGTGGCGCGGTCGACCTGATGTTTG
CTTGGTCGCGCTCCCAATCACGACGAGACATGCGTGGCGGAGGTAGACAG
GAAACGAGCGCGCCTCGAACGTATCAAGATCGTTACATGCCATGCAGGGA
TGCGTAGCTGGAACACCTAGGTACAAGTGAAGCTCGTGCATATCGACAGG
AAACAGCGTGTGGCGGACGGCCCGTGTACCTCGCCATGTATGGGCGGCAC
CAACGCCTAGGAATAAATCATTTGTGCAGGTTGACTTCTACCCTTCGACA
ACTTATCATCCTTGGGGGACGTCTTGTCTCCGTGTGACACCACGTCTTTA
GGTGTAAAAATCCTAAGAACGACGCAGAGGAGCTTCGCGTTCGCGACGCC
CCCGCTCAGGGGGCCCGCGGAGACTGGGTTCCGCCGCCTCTACCGAGTTG
TTTGTACCATCGCGGGCTAACTCTTGGAAGCACCGATCGACCCCGCGTTA
CCGGCCCCTCGGAATTACAGATGCAGGAGCAGGCCATCGCGTTCTTCCCT
AGCGAGTGCAATTCGACCGAGTTGGTCTTCAAGTCGGACTTCGCCGTGTG
GCAGGTGACAAGGCGGGGGTGTATCATTGGTGTGTGTGCCTTCGGCACGT
TTCTCTAGATCCAGGGGTAAGCCCGAGATCCAAGTTTAAGTTATTGTCCT
TTTGTGTTGCTCTTTCAACGAACACGTTTTGTACCTTGGAAACTCTCGCT
GCGGGGCGTTTTTTTTTTTAATATTATGGTCACTTGAGGAGAAGCATTTT
TTGCGGCTTGTTTCGTGTTTTTTTTTTAAGCGATTTCAGCCCTTTGCTTC
TGCTACAACGGCCATCTCTTGTTGACCGTCTTGTGTTCTTCCAGGTTGAC
TTCTCCGGGTGCACCGACGCACCCTACCTCCAGTACCAGGGCGAGACCTA
CAACCTGCTCCAGTTCCACATCCACTCGCCCTCCGAGCACGTGGTGAGTG
CTGACCCGACGCATCTTATGTTGCCGTCGACTCGCGCACCGGAGTCTGAT
GGATGATACACCCTTGGAAGCACCCGGGGAGAGACACGCTTACGCAGCAG
CTGCAGTACGCTTCGCAGGGGGTGGGTGTATGAGAACGCAGCTGCAGTAC
GTACGCCCTTGATTCGCAGGCGTGGTGTTTGAAGAACTACACGGTACCAT
CGAAACATGGCGCCTTCTTTCCTTGCCCTCTTGACGTCCGTGAAAGCCCG
TTCCGCCTGTGAGATTGTGTCTACGTACTTGTAGGCAAGAGGCTTACGAC
TGCGGTAGGGGTACTCAAAAGTTAACCCTCGCGTGGTGGAGATGTTGCGC
CGACTTCCCCCCGACGATCGAATCCGAGAGACTGCGTTTCGTGACGTGAC
GCACCGACGCGTCTGATAACATGACATGACATTATCGTCGCGGAAGTGTT
GTTGCTGTTTTTTGACGTGTCCTTTCTGCTCGCTCCTGTCCACTCAGCTC
GGTGGAGCAGAACACGCGGCGGAGATCCACCTGGTTCACCTCAAGCAGAA
CACCACCGACGGGTTGCTTGTAGTGGGGATCATGTTCGAAGTCAGCGATT
ACGGCCAGAACGTGGAGGTGAGACTCAGATAGAATGCCACGGGGCGCAGC
AGATACATGACGGTTGTGCGCTGCTGACAACACCATGGAGATGCTTTGGA
TTTTTTTTTTTCCCGGGATAGCCAGTTATTATCACCTCTATTTGCATAGG
GGCTTTCCAAACCACTCGTTCCCTTGGCGCGTCCGTCCATAGCGTGATCG
TTCACTGACACCGGGCATCCCCCCCCCCCCCCCTCGCACCCGACGACAGC
TGGAGCCCATGTGGAACGTGATGGACTTGAACCAGGATATCGCAGAGGAG
CAGTTCATGGCCGCGGCGTACTCGCTCTTGCCCGCTACCCCTAGCTTCAC
CACCTACTCCGGGTCGCTCACCACCCCCCCGTGCACCGAGGTGGGTGGAA
CCTTTCGCGTGCGAAGCCTACTGTAGCCTGCGAATGTGGCTTGTGGTGTT
GATTCTGTAATCGTCCAGTGGCGTGCTGCTGTTGCGTTGGATGAAGTGTT
AAAACATCTGGAAACAATAATTTTAGTTGATTACATAGTTCTCTACATTT
TATTACATTCAATTGTTTGACTGATTTATGAGTCGCCGCCGTAGCATGTT
GTAGGTTACCCCCCTGCCGTTGTTCGTGCGTGCATTAAGGAGCTGGCTAC
ATCCCTGGCCACGCGTAGGATGACACGACACATGATATTTCTTCAAAAAA
CTCAACCGGGTGCAACCCAAACGCCCGTTTCGGTCTTGGCAGGGTGTGAG
GTGGATCCTCATGAGCGAGCCCAACTACATGAGCACGTGGCAGCTGGACA
ACTACCGCCGCGCGGTTGCGTTGCACGAGGGCTCTAAGGTGCGTTGCCGC
TGTTTCTTCTCTGACCTGACGGTGTTATAGTAATTGAGTGCAAAGGCATA
CACAAATATACCGAGTATCCGGCCGTTTTTTCTCCCATCGCTGCAACGAT
TTGATTGAACATGCCCTTCTGTGGTAGCATTTCAAACGGGTGGTCGTTCT
ACAGCGACTGGAGAAAACAGCCGTAGTTTCAGACACGTGCTCCTTCCCTC
TCCCGTGCCGTGCCGTTCCCGTTAGGTGAGCGAGGTGGGCGCCACCAACC
GCCCGATTCAGGAACTCAACGGTCGCGACGTTTTGTACGTGAGCCCTTAG
back to top

Coding sequence (CDS) from alignment at chr_27:5244299..5253548-

>Ec-27_005680.1 ID=Ec-27_005680.1|Name=Ec-27_005680.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=888bp|location=Sequence derived from alignment at chr_27:5244299..5253548- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCTTCCTTCGCGCAAGTGACCTCGTCTTTGCTGGTGCTGGCCCTTGC
AGCACAGGCGAGCGGCCGCAAGATCCAAGAGAAGGGAGGGCTCCGGCTAC
GCAACCTCGCCGAGACCGACGACGAAGCTGCCGCGGAATGGACTTACCGC
GCCACGGGAGTCGTCGGGGAAGAGCCGTACGGCCCAGACGACTGGTACTT
GGGGTACCCCGACTGCGCAGGGACGAAACAGACCCCTATCAACATCGCCG
CAGACGTCATGGGCACGGCTACCATGCAGGAGCAGGCCATCGCGTTCTTC
CCTAGCGAGTGCAATTCGACCGAGTTGGTCTTCAAGTCGGACTTCGCCGT
GTGGCAGGTTGACTTCTCCGGGTGCACCGACGCACCCTACCTCCAGTACC
AGGGCGAGACCTACAACCTGCTCCAGTTCCACATCCACTCGCCCTCCGAG
CACGTGCTCGGTGGAGCAGAACACGCGGCGGAGATCCACCTGGTTCACCT
CAAGCAGAACACCACCGACGGGTTGCTTGTAGTGGGGATCATGTTCGAAG
TCAGCGATTACGGCCAGAACGTGGAGCTGGAGCCCATGTGGAACGTGATG
GACTTGAACCAGGATATCGCAGAGGAGCAGTTCATGGCCGCGGCGTACTC
GCTCTTGCCCGCTACCCCTAGCTTCACCACCTACTCCGGGTCGCTCACCA
CCCCCCCGTGCACCGAGGGTGTGAGGTGGATCCTCATGAGCGAGCCCAAC
TACATGAGCACGTGGCAGCTGGACAACTACCGCCGCGCGGTTGCGTTGCA
CGAGGGCTCTAAGGTGAGCGAGGTGGGCGCCACCAACCGCCCGATTCAGG
AACTCAACGGTCGCGACGTTTTGTACGTGAGCCCTTAG
back to top
Synonyms
The feature 'Ec-27_005680.1' has the following synonyms
Synonym
Esi0000_0144
Esi_0000_0144