Ec-27_005660.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005660.2
Unique NameEc-27_005660.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length305
Homology
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BLAST of Ec-27_005660.2 vs. uniprot
Match: A0A6H5JTA2_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTA2_9PHAE)

HSP 1 Score: 456 bits (1172), Expect = 2.390e-153
Identity = 237/265 (89.43%), Postives = 240/265 (90.57%), Query Frame = 1 
Query:  469 QAEENMKVIGRKSMRCVMAALGLLVLSIGPISPKGSFVTAEAADGAAAAAAEIPQEPKVDADEDGMGGAEGEEEPAIPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPGPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIMVLVGSLLXXXXXXXXXXXXXXXXQAPSKRAKTD 1263
            QAE NMKV+GRK MRCV+AALGLLVLSIG ISPKGSFVTA   DGAAAAAAEIPQEPK+DADEDGMGGAEGEEEP IPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVP PPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIMVLVGSLL                QAPSKRAK D
Sbjct:    2 QAEANMKVVGRKIMRCVIAALGLLVLSIGLISPKGSFVTAGVVDGAAAAAAEIPQEPKMDADEDGMGGAEGEEEPTIPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPAPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIMVLVGSLLLLLVLFAITLSKPPP-QAPSKRAKAD 265
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BLAST of Ec-27_005660.2 vs. uniprot
Match: A0A836CGC7_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC7_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.590e-44
Identity = 86/160 (53.75%), Postives = 108/160 (67.50%), Query Frame = 1 
Query:  697 IPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGE-VNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPGPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIMVLV 1173
             P A V +LT+ +FE +TQASTGATTGDWFV+ YAPWCGHC++L+ TW ELA  +    VNV KVD TANR + +RFGV+GFPTLL    G  + + GPR L+   EFA GG+   +SVPVP  P   G L  LL++V KDL  V  GK+PS  T+  L+
Sbjct:   36 FPKAEVVLLTEQNFEHLTQASTGATTGDWFVKLYAPWCGHCKRLEPTWDELAAAVAARGVNVAKVDVTANRRVGERFGVRGFPTLLLLHAGRAYTYRGPRTLEKLTEFAAGGYAAAESVPVP--PPRGGALAALLSTVRKDLAAVPQGKVPSFPTLAALL 193
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BLAST of Ec-27_005660.2 vs. uniprot
Match: A0A7S2WDG4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDG4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 3.420e-41
Identity = 79/135 (58.52%), Postives = 97/135 (71.85%), Query Frame = 1 
Query:  712 VQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKK-TDSVPVPGPPSLAGGLKGLLTSVLK 1113
            V VLT  +FE  TQASTGATTGDWFV+FYAPWCGHC+KL   W ELA +L G VNV KVDA A+  L KRF ++G+PTL+FFS G ++K+   R L+S + FAKGG+K  T++V VP PP L   LKG    +LK
Sbjct:   30 VVVLTSQNFEHDTQASTGATTGDWFVKFYAPWCGHCKKLAPVWDELATELKGVVNVAKVDAEAHSSLRKRFRIRGYPTLIFFSQGKMYKYEEKRSLESLVAFAKGGYKDDTEAVDVPAPPDLIATLKGEFFGLLK 164
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BLAST of Ec-27_005660.2 vs. uniprot
Match: A0A4D9CPI9_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CPI9_9STRA)

HSP 1 Score: 157 bits (398), Expect = 2.890e-40
Identity = 75/162 (46.30%), Postives = 102/162 (62.96%), Query Frame = 1 
Query:  721 LTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPGPPSLAG-----------GLKGLLTSVLKDLEGVKDGKMPSQMTIMVLV 1173
            LTD +FE +TQASTGATTGDW V F APWCGHC+ L  TW E+A +L GEVNV KVDA AN  L  RF ++ FP L FF  G+++ + GPR  +  +EFA+GG+K   S PVP PP+  G           GL+ L   ++++++ V  G+ P     +V++
Sbjct:   30 LTDSNFEHLTQASTGATTGDWLVAFSAPWCGHCKHLVPTWEEVAMELKGEVNVAKVDAIANSNLASRFSIRAFPMLKFFHQGSMYDYRGPRNAEQLLEFARGGYKNMPSAPVPVPPTFLGKIKLQLDEVTEGLQALCYQIVREVQAVYKGERPIDTPFIVMM 191
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BLAST of Ec-27_005660.2 vs. uniprot
Match: U6LL83_9EIME (Thioredoxin, putative n=1 Tax=Eimeria brunetti TaxID=51314 RepID=U6LL83_9EIME)

HSP 1 Score: 155 bits (393), Expect = 2.040e-39
Identity = 75/160 (46.88%), Postives = 105/160 (65.62%), Query Frame = 1 
Query:  706 ATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPGPPSLAGGLKGLLTSVLKDLEGVKDGKMPSQMTIMVLVGSLL 1185
            + VQVLTD +FE+ TQA TG+T+GDWFV+FYAPWCGHCRK+   W ELA KL G +NV  +DATAN    +RFG++GFPTLLFF +G ++ + G R +D    FA GG++KT + P+P   S    +K    S ++ L  V   + P  + ++  VG ++
Sbjct:   53 SAVQVLTDANFEQETQAVTGSTSGDWFVKFYAPWCGHCRKMAPAWEELARKLKGRINVAHLDATANPQTARRFGIRGFPTLLFFKNGQMYSYQGSRAVDDLYAFATGGWEKTTAKPIPPVLSWLDSMKDEFLSAVQQLRDVFI-QFPVPLMMLFAVGCIM 211
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BLAST of Ec-27_005660.2 vs. uniprot
Match: A0A7S2V1W0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1W0_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.500e-39
Identity = 71/120 (59.17%), Postives = 85/120 (70.83%), Query Frame = 1 
Query:  712 VQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPGPPS 1071
            V VL +  FE +TQASTGATTGDWFVEFYAPWCGHC++L   W E+A +L G VNV KVD T NR L+KRFGV GFPTL FF HG ++ + G R  ++  EF K G+ + D   VP PPS
Sbjct:   40 VIVLDNDSFEHLTQASTGATTGDWFVEFYAPWCGHCKRLTPVWEEIATELKGTVNVAKVDGTQNRKLLKRFGVSGFPTLKFFHHGKMYSYKGARTAEALTEFVKAGYAEQDGEAVPPPPS 159
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BLAST of Ec-27_005660.2 vs. uniprot
Match: A0A812WAE0_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WAE0_SYMMI)

HSP 1 Score: 154 bits (389), Expect = 3.730e-39
Identity = 81/172 (47.09%), Postives = 105/172 (61.05%), Query Frame = 1 
Query:  679 GEEEPAIPGATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPGPPS-LAGGLKGLLTSVLKDLEGVKDGKMPS------QMTIMVLV 1173
            G+EE +   + V VLT  +FE  TQASTG+TTGDW VEFYAPWCGHC++L   W ELA +L G  NVGKVD T NR L  RF +KGFPT+ FF  G  + + G R L++F+ F KGG+K   SV  P  P+      K +LT  L   + + +G+  +       M I+VLV
Sbjct:   17 GDEETSSKASNVVVLTSANFEMETQASTGSTTGDWIVEFYAPWCGHCKRLQPVWEELATELKGIANVGKVDVTGNRDLGNRFDIKGFPTIKFFRQGQTYDYKGGRSLEAFVNFVKGGYKDAPSVATPDQPTWFETTKKSVLTPFLAAQKDIANGRYMTPNVFVVSMPILVLV 188
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BLAST of Ec-27_005660.2 vs. uniprot
Match: H3G8D9_PHYRM (Thioredoxin domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G8D9_PHYRM)

HSP 1 Score: 152 bits (385), Expect = 8.490e-39
Identity = 73/123 (59.35%), Postives = 87/123 (70.73%), Query Frame = 1 
Query:  706 ATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPGPPSL 1074
            + V VL+  DFE  TQA +GATTGDW VEFYAPWCGHC+KL+  +  +A  L GEVNV KVD TAN  L KRFG++GFPT+L FSHG  +KFAG R L+    FA+GGFK  +   V G PSL
Sbjct:   21 SNVVVLSTSDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLEPIYETVANDLKGEVNVAKVDVTANSELGKRFGIRGFPTVLHFSHGKSYKFAGKRTLEELSAFARGGFKSVEGEVVSGAPSL 143
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BLAST of Ec-27_005660.2 vs. uniprot
Match: D0MU36_PHYIT (Protein disulfide-isomerase, putative n=13 Tax=Phytophthora TaxID=4783 RepID=D0MU36_PHYIT)

HSP 1 Score: 152 bits (383), Expect = 1.960e-38
Identity = 72/123 (58.54%), Postives = 90/123 (73.17%), Query Frame = 1 
Query:  706 ATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPGPPSL 1074
            + V VL++ DFE  TQA +GATTGDW VEFYAPWCGHC+KL   + ++A +L G+VNV KVD TAN  L KRFG++GFPTLL FSHG  +K++G R L+   EFA+GGFKK +   V   PSL
Sbjct:   28 SNVIVLSNDDFEHKTQAGSGATTGDWLVEFYAPWCGHCKKLVPIYEKVASELKGQVNVAKVDVTANAELGKRFGIRGFPTLLHFSHGKSYKYSGKRTLEDLAEFARGGFKKVEGEVVNAAPSL 150
[Close]
BLAST of Ec-27_005660.2 vs. uniprot
Match: A0A662WNR8_9STRA (Thioredoxin domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WNR8_9STRA)

HSP 1 Score: 151 bits (381), Expect = 6.020e-38
Identity = 78/163 (47.85%), Postives = 103/163 (63.19%), Query Frame = 1 
Query:  706 ATVQVLTDGDFERITQASTGATTGDWFVEFYAPWCGHCRKLDGTWTELAEKLGGEVNVGKVDATANRGLVKRFGVKGFPTLLFFSHGNLHKFAGPRKLDSFIEFAKGGFKKTDSVPVPGPPSLAGGLKGLLTSVLKD---LEGVKDGKMPSQMTIMVLVGSLL 1185
            + V VLT   FE +TQA +GATTGDW VEFYAPWCGHC+KL   + +LA++L GEVNV KVD TAN  L KRF ++GFPT++ FSHG  +KFAG R L     FA+GGF+K +   V   PS+       +T + KD   L   K   + +  ++ + +G LL
Sbjct:   45 SNVVVLTTSTFESLTQAGSGATTGDWLVEFYAPWCGHCKKLAPVYEKLADELKGEVNVAKVDVTANSELGKRFEIRGFPTIVHFSHGQAYKFAGKRTLPDLAAFARGGFEKVEGTAVSTAPSVLDQATQYVTDLKKDFITLLATKKNVLIATFSVGLYLGLLL 207
The following BLAST results are available for this feature:
BLAST of Ec-27_005660.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTA2_9PHAE2.390e-15389.43Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A836CGC7_9STRA1.590e-4453.75Thioredoxin domain-containing protein n=1 Tax=Trib... [more]
A0A7S2WDG4_9STRA3.420e-4158.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CPI9_9STRA2.890e-4046.30Thioredoxin domain-containing protein n=2 Tax=Mono... [more]
U6LL83_9EIME2.040e-3946.88Thioredoxin, putative n=1 Tax=Eimeria brunetti Tax... [more]
A0A7S2V1W0_9STRA2.500e-3959.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A812WAE0_SYMMI3.730e-3947.09Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
H3G8D9_PHYRM8.490e-3959.35Thioredoxin domain-containing protein n=1 Tax=Phyt... [more]
D0MU36_PHYIT1.960e-3858.54Protein disulfide-isomerase, putative n=13 Tax=Phy... [more]
A0A662WNR8_9STRA6.020e-3847.85Thioredoxin domain-containing protein n=2 Tax=Noth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5224723..5232631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2285
Hectar predicted targeting categoryother localisation
Gene idEc-27_005660.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005660Ec-27_005660Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5224723..5232631 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005660.2Ec-27_005660.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5225751..5232289 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005660.2.8Ec-27_005660.2.8Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5224723..5225917 -
Ec-27_005660.2.7Ec-27_005660.2.7Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5226715..5226780 -
Ec-27_005660.2.6Ec-27_005660.2.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5227336..5227425 -
Ec-27_005660.2.5Ec-27_005660.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5228333..5228401 -
Ec-27_005660.2.4Ec-27_005660.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5229090..5229142 -
Ec-27_005660.2.3Ec-27_005660.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5229570..5229590 -
Ec-27_005660.2.2Ec-27_005660.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5230081..5230300 -
Ec-27_005660.2.1Ec-27_005660.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5232061..5232631 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0056603UTR:Ec-27_005660.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 5224723..5225750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005660.2CDS:Ec-27_005660.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5225751..5225917 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0056605UTR:Ec-27_005660.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 5232290..5232631 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005660.2 ID=Ec-27_005660.2|Name=Ec-27_005660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=305bp
MEVCVVFRGAPTTRGDPPAAAAAVQLCARPRDHSTRSHRTLHAGGGKHEG
HREEEHALCNGRAGAAGTLDRSHLAQGFLRDCRGSRWRCRRRRRDSPRTK
GGRRRGRNGGGGGRRGAGHPGGDRPGADGRRLREDYAGVDGGHDRRLVRR
ILRAVVWTLPKAGRHVDRACGEAWGRSERGQGGCDGEQGVGEAVRRQGLP
DAFVLLAWEPPQVRWPSQARFLHRICQGRVQEDGLCACARSPFPGWWLEG
TPDQRAQGSRRGKGRKNAVSDDDHGAGWVSSASPGALRHHHAFQAPASGP
VEKS*
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spliced messenger RNA

>Ec-27_005660.2 ID=Ec-27_005660.2|Name=Ec-27_005660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2285bp|location=Sequence derived from alignment at chr_27:5224723..5232631- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTTGTCACCTTGTAAGCACCTCGGCCCCGAGATCCTCCCCCGCCATCAGA
GGGCGCAGCTCCTGCTGCAGGTGGTGTTGTGGGGCTCGTGCTTGAGCTTG
CTTTTCTGCCGATCGGCCGTCCGCCCGCAGCAACTCGCGCCCTCGCCGAA
GACACCCCGGACCAGCCGGACGGCGAACGAACGGCCCTTCCCACCACATA
ATTCAACATGGTGATCGCGAAGTGCAGCTGGCACGTCGTGTGTGGCAGCC
GCCTCTCCTGCAGCAGCTAAACGGGGTGTATGTCACACCTCTTGCTGTTG
TAAACCACATGTTACACCCAAAATAGGGGGCGCGCGGATGATATGGAGGT
ATGTGTAGTATTTCGCGGAGCCCCTACGACAAGAGGAGATCCACCCGCCG
CCGCCGCTGCTGTGCAGCTGTGTGCACGACCGCGAGACCATTCCACACGC
TCGCACCGCACACTCCACGCAGGCGGAGGAAAACATGAAGGTCATCGGGA
GGAAGAGCATGCGCTGTGTAATGGCCGCGCTGGGGCTGCTGGTACTCTCG
ATAGGTCCCATCTCGCCCAAGGGTTCCTTCGTGACTGCCGAGGCAGCAGA
TGGCGCTGCCGCCGCCGCCGCCGAGATTCCCCAAGAACCAAAGGTGGACG
CCGACGAGGACGGAATGGGGGGGGCGGAGGGAGAAGAGGAGCCGGCCATC
CCGGGGGCGACCGTCCAGGTGCTGACGGACGGCGACTTCGAGAGGATTAC
GCAGGCGTCGACGGGGGCCACGACCGGCGACTGGTTCGTCGAATTTTACG
CGCCGTGGTGTGGACACTGCCGAAAGCTGGACGGCACGTGGACAGAGCTT
GCGGAGAAGCTTGGGGGCGAAGTGAACGTGGGCAAGGTGGATGCGACGGC
GAACAGGGGGTTGGTGAAGCGGTTCGGCGTCAAGGGCTTCCCGACGCTTT
TGTTCTTCTCGCATGGGAACCTCCACAAGTTCGCTGGCCCTCGCAAGCTC
GATTCCTTCATCGAATTTGCCAAGGGAGGGTTCAAGAAGACGGACTCTGT
GCCTGTGCCCGGTCCCCCTTCCCTGGCTGGTGGCTTGAAGGGACTCCTGA
CCAGCGTGCTCAAGGATCTCGAAGGGGTAAAGGACGGAAAAATGCCGTCT
CAGATGACGATCATGGTGCTGGTTGGGTCTCTTCTGCTTCTCCTGGTGCT
CTTCGCCACCACCACGCTTTCCAAGCCCCCGCCTCAGGCCCCGTCGAAAA
GAGCTAAGACAGACTAGCTTCACGTAGCCTTCGGGGAGATGCTGCAACAG
TCTTGGTATGTACGACAGCACTGTATTTATGTGTGTGCCGCGACGTAGCG
CAGGAATGAAAGCCGGGAGAGTGGGTGGCCATTTCGCAACGCAGAGCTCT
GTTGACCGCGCAGAAATATTCGGGTAAGATCCAGAGTTGAAGATCCAGAG
TTGCACCGCAGACCTATAGCTGTGCACGGAGAGCCGCTGCAATGTTGTAC
CTCCATTCCACAGGAGTAAAGTTGTTTAGGCGGGCCTGATTGGTAGCTCC
TGCCGTCAGACGTAGACTTCGCGCGCTTGCTTGCGGTGTGCATTGCGTTA
TCGGATGGTTTTTGTCGGCAGGTGCCCGGGGGACTTCACTGTTGCTAATG
TTTTTTCTCAATGGATTTGGTTGGGTGTTCCTCCTGACGGCGTTCAGTTA
ATTTTCAGGCCGCAGTTAATTCTGTGTGTTGTTCCCGGCAAGTGTTGTTG
AGGGCAAGATTCGGGAGTTACAGATCATCATGCGAAGGTGACGGAGAAAT
TTCTTGCGGAATCGTTTCCGCTTTGGGAGAGACATGCTTTGCAGATTTTC
TTACTCAAACGGTCGCTTGTTTTGCGCCGTCTCTACAGTAGTCCGACGTA
CGATCCAGTCAGGTTAACACGGGCACTGCTAAATAGTCCGTCCCTGGTTC
GGTAGTCTTTCTATCGGAAGGGCGTGTTTGAAGCTGCTTGTTTTGATGCG
CTAGGTGTGATGTCTCGATAGTACCGCCGAGAAGTTGATGGTGGTTGCTT
GAAATACATTCGTATGCATGCCCTCCCCGCTGCGTCGCGATCTACCCCTT
CTTTCGGTTGTGAGACGGACGATTCTCTGGCCGCGCGCTAGCTTCGCCCA
TAAGAGGGGGCAAAGCACGAAGCCGAGTGAAGTGTGTTCGATGTTTTCGC
CCTCTAACCGTGTCAATCCGAGTTTTCGCCCTGACCGTTTCTGTCCGAGC
GCTTCGTGGACAAAAAAGCAGCACCATCACAAAAG
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protein sequence of Ec-27_005660.2

>Ec-27_005660.2 ID=Ec-27_005660.2|Name=Ec-27_005660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=305bp
MEVCVVFRGAPTTRGDPPAAAAAVQLCARPRDHSTRSHRTLHAGGGKHEG
HREEEHALCNGRAGAAGTLDRSHLAQGFLRDCRGSRWRCRRRRRDSPRTK
GGRRRGRNGGGGGRRGAGHPGGDRPGADGRRLREDYAGVDGGHDRRLVRR
ILRAVVWTLPKAGRHVDRACGEAWGRSERGQGGCDGEQGVGEAVRRQGLP
DAFVLLAWEPPQVRWPSQARFLHRICQGRVQEDGLCACARSPFPGWWLEG
TPDQRAQGSRRGKGRKNAVSDDDHGAGWVSSASPGALRHHHAFQAPASGP
VEKS*
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mRNA from alignment at chr_27:5224723..5232631-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005660.2 ID=Ec-27_005660.2|Name=Ec-27_005660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=7909bp|location=Sequence derived from alignment at chr_27:5224723..5232631- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTTGTCACCTTGTAAGCACCTCGGCCCCGAGATCCTCCCCCGCCATCAGA
GGGCGCAGCTCCTGCTGCAGGTGGTGTTGTGGGGCTCGTGCTTGAGCTTG
CTTTTCTGCCGATCGGCCGTCCGCCCGCAGCAACTCGCGCCCTCGCCGAA
GACACCCCGGACCAGCCGGACGGCGAACGAACGGCCCTTCCCACCACATA
ATTCAACATGGTGATCGCGAAGTGCAGCTGGCACGTCGTGTGTGGCAGCC
GCCTCTCCTGCAGCAGCTAAACGGGGTGTATGTCACACCTCTTGCTGTTG
TAAACCACATGTTACACCCAAAATAGGGGGCGCGCGGATGATATGGAGGT
ATGTGTAGTATTTCGCGGAGCCCCTACGACAAGAGGAGATCCACCCGCCG
CCGCCGCTGCTGTGCAGCTGTGTGCACGACCGCGAGACCATTCCACACGC
TCGCACCGCACACTCCACGCAGGCGGAGGAAAACATGAAGGTCATCGGGA
GGAAGAGCATGCGCTGTGTAATGGCCGCGCTGGGGCTGCTGGTACTCTCG
ATAGGTCCCATCTCGCCCAAGGTGAGGTGACTGGAATTTTGGTCTGCGGC
TTTGCACTCTGCACACACATATGGAGAGAGCCGTTTTCCTTCGTTGTGGT
TATGCTGCCGTTTGTTCCGTTCTGCAGGCCGGGTAGCCGCCAGTCATTGA
TCGAGAGTTGGAGTTGGATAGCTGTTGCTACAGCAGTGGTCATAGTGGCA
TGCCACTCGGGCGATGCCTGCTTCATGATACGAGGTTGTTCGTTGCGCGC
GTGAATATTCCGCTTTGAAGACGTCCGCTGCGCGTCTGTTGCTCATTGGT
CAACGAAGTTTGGAGAGAACCTGTACTTGCAAATAACTACAGTCTACAGA
GTAGATATAGATATAGAAATAGATACCGGGGGTAAAGCTTCTGCCGCGAA
CGAATGCTCGCTGCTTTAGGCAGCTTTAGGCAGTGAACGTATGTTGCCAA
AGCAGAAACGAATCCCGTTTGTTCTTGGTACACAGCAGACTGCAGTGTAC
GGTAGGTTGCAGAAGATACCACACCCCCTGGACCGATCTCTACGTTACGC
CCGATCTCTCTACATTGTACGGACAAAGGAGGATACCAACATCAAATGAT
GTGTGTTCGGAAAGATCTCGACCAGACGTTTCCAACGCCGTCATTGCCGG
CACCGCCACTGGTTTTGCTGCAGAGTATTGGAGCTGTGGTAGACATCTAC
CATGCCACCTGCACGGTGTAGGCCGATGTAGGACGCCGCAAAGCGTCGTC
TTCGCTCCGAGACCAATAGCCTGACCTTCCAGCGGGTAGAAATACGCTTG
TTCGTTACGATTCAGTCGATGCAGCTGCTTGAGTTACACCAGGCTGTTGT
GCTTATTGGGTACCCGCGAGCTTTTGTTACTTTGGTACATGCCATACTTC
GTACTCCGTACAAGGTTTCCCTGCGGGATGTCAGTTACGGGCATCCGGCA
CAGGGTGATCTTTTCAATTTCCCAGGGGGGTGATGGCAACAGTTTCATGT
ACACGTATTTGGATTCCTTTGCCTCTAGTTGAAAAGGCGTTGGGTGTACA
CGTCGTAATCAGACACAGAGGTTTCCAAGCGAGGAACTAAACCAAATTAC
CGTTGCCGCAGCAATTTGAGCCCTGGCGTGTGCCGGCAGCTGCGGTCGAC
CTGCCTCAGCATCTCTGTTAGTACGCCCACGTTCTCTTGGTCTCTTCTGT
TGTGCCGTTTTTTGGAGGATTCATGTGTGTTTGACTGCTCAAGTTCGACT
GCTGCTGCTGCCGGCATACTCCGCTTTCTTTGTGTTTCGCGTGGTTTAAG
CCAAACTCTGGGACCTAAAGAAGTATTTTTTGGATTTTTTTGTGTCAACG
CAATGCAATCGCCAGAGTTCAAAAGCAGAAATCGCGATGCAATCGAGAGC
ATCATCTCGAAGATCGAGGCCAACATAGCAGGCGACAGCAAGTCAGGAAG
ATACCGACAGATGCTCCTTCGCTCTTATTCCCTTGTTATGCAGCCCCGAC
TTTCGTGCTTCCCGGCAATCTACCTACTTGTAAGCATTTCCGATGCGCCG
GCTCTGACCTCTTCAGCATGGACTATGTGTCCACCCTCTGTGTTCTGCCG
TCCTGACGGGCAGATGACTTGATTTTGAGCCTCACTTCAGCATTTCTCAT
GTATTTTGCGCCAACCCTCGCTCCTTATTTGGTCAGTGAGGAAACCAACA
GGAATTTGACGCTCCAACCTCTAACCCCCCATCACAACATTGGGGACGTT
TTTTGACCCGATCATCCGGCCGCCAATCAAGGGTTCCTTCGTGACTGCCG
AGGCAGCAGATGGCGCTGCCGCCGCCGCCGCCGAGATTCCCCAAGAACCA
AAGGTGGACGCCGACGAGGACGGAATGGGGGGGGCGGAGGGAGAAGAGGA
GCCGGCCATCCCGGGGGCGACCGTCCAGGTGCTGACGGACGGCGACTTCG
AGAGGATTACGCAGGCGTCGACGGGGGCCACGACCGGCGACTGGTTCGTC
GGTGAGAGAGAAAGAAGCGGCAGCAAAGCGAAGCTCAAGTTTGAGTTGCT
CGTCCACAATCACGGGCTGATGGGATGGGTTTTTGTTTGTCTTGGCTGCA
GGGCTTGGTTCTGCTGTGTTGAAGAATGGCATATGGCGGCTTTCCATGGC
GCATGCAGCCAAGGGTTTCCCGCCGTGGAGTAGTTGCCGCCCCCCGCGAC
ACTGCGGTCTCCCCCTCCCGTACTCATGTTCATTGTCGGTGGTGTAGAAT
ATCTCGCGTGTTTGCCTGCTGTACGAATCTGAAAACGTTTGCAATGTCTT
GCGATGCCTACGCCGCTGATTTCTGCCACGCACGTGCTCGGGGTGGCGTC
GGTGGTGGTCGGACTACCGATGCTTCTGCTACCGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCGTGTGCTGCTGCTGCTACGTGTG
CTGCTGCTGCTGCGTGTGCTGCTGATGCCGTGGATGTGCAGAATTTTACG
CGCCGTGGTGTGGTGAGAGAAGTGTTCTTTGTCTCGTGGCCATTATTGTC
GTTTGAGTTATGAGGTACCATGGTATTTTGCCACCAGTACCCGTGGTGTG
CCTCCATTCCCCCATGAGCCTTTCTTCAGCGGTTTTGGTTTCGGAACTTT
GTCCGTCACATCCAAGTCTCGTAGGAATACAACGAACACTATTTAGTCCA
ACCAACACAGGGTCCTGAACACTCGCGGCTTGCACACGCCAGGCAATGAG
ATGAGAACGTCGCGACTCAACCCGATAGGCTACGGAAGTATGTTTGGTGT
CGATGAAAAACGCCGTCTATCTCGAGTGGCTCCCGCTCGTTCGGCTCTGA
CTATTTTTTAACCCTACTTGAATCTCTTGACCGCGCTTATTTCTGCCGTG
TCCGCCGCTGACTTGACCGCCGCTGTTGCTTCCCCGTAGGACACTGCCGA
AAGCTGGACGGCACGTGGACAGAGCTTGCGGAGAAGCTTGGGGTGAGTTC
GTGCCAGCAGCACTCTTGGTTCTTGCCCGCGAGGTTCATCTCGACCTCTC
GGACGGATGAAGGATGAAAACCAACCTTGTGTTTTGTTTTTTGTTATTAT
TGTTGTGGCCTACCACAACGGTGTCCAGCCCGATGTCCGACCTTTCAAGA
CTACGGAATTGAACAGGATAGGAGACTCCCCCTGCGCGACAGAATCGACG
CAGTAAAGCTACTGCTGTGGTAGACACATGCACGGCATGCTCTCTGAGAC
TCAAGCCACTGCTGTTCGAGTCGATAGCCACTGCTGTTCGAGTCGATACT
CGATCGTGAGGCGTTCTCTCGTACATCTTGGAAGCCCCGGGAATGCTCGA
TCGTGAGGCGTTCGTGCGTACGAAGAACCCGCTGGGAGTTATGAAGTAGG
GCTTCACCACGGATCGAATGGAGCAAGGGTTCGCTGGTGGTTTGGGCCAC
CAATGGGAGCATAGTGTTTATCCCCGCACCAAGAGAGAAACGATTTTCAC
GGCGGCGGTGGGCTGGAGGTACCGGAACGCGGTTTGCCAACACGGGCTTC
AACAAGTGTCATGTTACTGAAAATTCGCAGTATTTGATAAGGGGTTCCGA
AAATGGTTGTGGTCCCCCAACAAGAAGCTGCCCCCGGCCTGTGTACCCCG
TTTTTGCCGTGTGCGTGCGCTCACAAACAGGGCGAAGTGAACGTGGGCAA
GGTGGATGCGACGGCGAACAGGGGGTTGGTGAAGCGGTTCGGCGTCAAGG
TGATGAATCACTCCCGGTGACCCCGGTCGCTCCGTTTGCTGTCACTATTT
TATTTTGTCTATAGCCGAGTCTTGGAAGTCCTTCGGATGAATTTTTGCTC
ACCAGACGGCGACAGTGACAGTGGTCGTGTGGTGCGTTATTGTTGCAAGC
GCTTTTGTTCGTTTTCTGTTTTGTGAGTGACACCGTAGCAATGGTGTGTT
CTTTCCGCTGCTGTCAAATTGTTGATGCAGAGCGCTCGTTTTTCTTGTAT
TTCATGACTCTTTCACGTGCTGTTGACATGTCGGCAAGCCTGAATGTTTT
TTTGACGAACAGCGGGGATGACTGGTAGGATGATGGTCACTCGAAGCTGG
AGTGCTCATTCGAACTATTTGACAGAGTCGTGTGGGCCGAAACCATACGG
AGGTAGGGCCAAGTGTTCGCGGAAGCTGGCTGGCCTTTCCCGTGTTGTGA
AAGAGACACCTCAAAAAGATAAGTTGTTTGTTGTCGTGGATACATGTGCT
CTTGCGTCTACCTTTCCATCATCCACGTCCGTTCTGCCGCAGGAACTCTA
CTCGAATTTCTTACAGCTGAGTGTCCACCACCCACCTCCACCATGCTGCA
TGTTATTCCATCGAAGTTATCCCGGCACAGTGGGGGTCCCTCAATAGTGC
CACTGCCCGGTATAGTGCCGGTGAAATAGCGTGGCACGGCTGGAATGTCA
AAGTTGCCACCCTTCTCTGTATGGAGCCGGGTGCTCGGTATAATTCCAGT
TAACCTGACGGGCACATACGGGCACCACACCTCAGTATTATTTGGTTCCG
TTCGTTCGCGGCACCGCGAAAACGCGACGAATTGTGTCGCCTCGAGGTTC
AAATGTATAACCCGCATTTTGCTTGACCCGTGACTCTCCCCACGCCGTCC
GCACAGGGCTTCCCGACGCTTTTGTTCTTCTCGCATGGGAACCTCCACAA
GTTCGCTGGCCCTCGCAAGCTCGATTCCTTCATCGAATTTGCCAAGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCT
CGGACGAGAGGGCGGGGGTGGCTCCATGGCTTAACTGTTGCACCAGATTG
TGACTGATCATTTTTTTTTTTCTGATGCCGGGCGCTCCTCTGCAAGTGTC
GCGCGTGCCTCTTGGTATGGTATGTTGCTCGGTACGCCCTCCCCCCGCGC
GGCGGTGTGCATGATCACCACGGAACGAGAGCTCTGTAGAATCCTTTTTT
TTTGCCGACAAGAGCCGCTGGTAGACTCTTCCTTGTCGCGGTTGCCCGAG
AGTCTCATGGAAGTAAAGGCCAAAGTAAAGGCCGATCGCCTTTCCGCATC
CTCTTGACTACGCTGCATCCGCTCTCGGGTTTCTCCCATATCATGTTGTT
GTTCGTTGAACGCCTCCCGTCACCCGCTCCCGACCGGCTCACCCTAACCC
TCGTTGTGGTTTCGCGGGTCTCGTGCTTGCTTTTTGTTGTTTCGAGAGCA
GGGAGGGTTCAAGAAGACGGACTCTGTGCCTGTGCCCGGTCCCCCTTCCC
TGGCTGGTGGCTTGAAGGTAATGGGCGGGATGTTTAAACTTCCCCGTTGT
TATTTTTTCAATGCAGTCACTCGCACAATTTTGCGTGGAGGGCGTACGGA
TGTTCAAATGTTTCAATTTCTATTTTATCAATGTACTCACTCGCACGATT
ATCCGGGGAGGGCGCACGGCTAACAGGTTCGTGTTTGGCTGCGAAGTGAA
GGTGTGAGTTTGAGAGTGATTTGTGTGAGGACCCTTGAACTCCAGAGCGT
TTTGCGCGAACAGCGGATGGCACAAGAATTTGGGAACTCAGCAATCCCAA
AGGCAGCTCGCGGAGAGAAAATAAGTGCCCTCAGTTTTCCTGTTGGTCAA
CACCGGTCCCGCTGATTTCTGATTGGCCGGGAATCGTTGACCGGGTGTGG
GACGTCAGCCATGGGCGAAAATTCACGTTTTGGCTTGGATGAGACCCCCC
CTCCCATCTTCTGGCTTGATTTTCCATCTCGGCTTTTGGACCCTCCTCTG
CTTGCAAGAGAGGGGGTGGGAAATCTCACGTACCTTGGTGGGATATTTCA
CATTTCGTCGATTTAGAGACAGCAGTCTCAATACTTCAATTTACCGCCAC
CTTCGTTCCGGAAGATTTTTTCGACATTCGGTGTGTGATTTTCAGCTCCC
TTTGTTTGCTTGAAATGTGATCAGAGAAGCGTCTGTATTTTTCCGATGCG
CTCTTCGGGCCCGGCGCTATTAGTAAGACCTACTCTGTCCAGCCGCATGT
GATGCCCCTAAAGGCCCTAATCCCGCCCGCTCCAAACACACACCGTCCGT
GGCACGAATAACAGGGACTCCTGACCAGCGTGCTCAAGGATCTCGAAGGG
GTAAAGGACGGAAAAATGCCGTCTCAGATGACGATCATGGTGCTGGTTGG
GTCTCTTCTGCTTCTCCTGGTGCTCTTCGCCACCACCACGCTTTCCAAGC
CCCCGCCTCAGGCCCCGTCGAAAAGAGCTAAGACAGACTAGCTTCACGTA
GCCTTCGGGGAGATGCTGCAACAGTCTTGGTATGTACGACAGCACTGTAT
TTATGTGTGTGCCGCGACGTAGCGCAGGAATGAAAGCCGGGAGAGTGGGT
GGCCATTTCGCAACGCAGAGCTCTGTTGACCGCGCAGAAATATTCGGGTA
AGATCCAGAGTTGAAGATCCAGAGTTGCACCGCAGACCTATAGCTGTGCA
CGGAGAGCCGCTGCAATGTTGTACCTCCATTCCACAGGAGTAAAGTTGTT
TAGGCGGGCCTGATTGGTAGCTCCTGCCGTCAGACGTAGACTTCGCGCGC
TTGCTTGCGGTGTGCATTGCGTTATCGGATGGTTTTTGTCGGCAGGTGCC
CGGGGGACTTCACTGTTGCTAATGTTTTTTCTCAATGGATTTGGTTGGGT
GTTCCTCCTGACGGCGTTCAGTTAATTTTCAGGCCGCAGTTAATTCTGTG
TGTTGTTCCCGGCAAGTGTTGTTGAGGGCAAGATTCGGGAGTTACAGATC
ATCATGCGAAGGTGACGGAGAAATTTCTTGCGGAATCGTTTCCGCTTTGG
GAGAGACATGCTTTGCAGATTTTCTTACTCAAACGGTCGCTTGTTTTGCG
CCGTCTCTACAGTAGTCCGACGTACGATCCAGTCAGGTTAACACGGGCAC
TGCTAAATAGTCCGTCCCTGGTTCGGTAGTCTTTCTATCGGAAGGGCGTG
TTTGAAGCTGCTTGTTTTGATGCGCTAGGTGTGATGTCTCGATAGTACCG
CCGAGAAGTTGATGGTGGTTGCTTGAAATACATTCGTATGCATGCCCTCC
CCGCTGCGTCGCGATCTACCCCTTCTTTCGGTTGTGAGACGGACGATTCT
CTGGCCGCGCGCTAGCTTCGCCCATAAGAGGGGGCAAAGCACGAAGCCGA
GTGAAGTGTGTTCGATGTTTTCGCCCTCTAACCGTGTCAATCCGAGTTTT
CGCCCTGACCGTTTCTGTCCGAGCGCTTCGTGGACAAAAAAGCAGCACCA
TCACAAAAG
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Coding sequence (CDS) from alignment at chr_27:5224723..5232631-

>Ec-27_005660.2 ID=Ec-27_005660.2|Name=Ec-27_005660.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=915bp|location=Sequence derived from alignment at chr_27:5224723..5232631- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAGGTATGTGTAGTATTTCGCGGAGCCCCTACGACAAGAGGAGATCC
ACCCGCCGCCGCCGCTGCTGTGCAGCTGTGTGCACGACCGCGAGACCATT
CCACACGCTCGCACCGCACACTCCACGCAGGCGGAGGAAAACATGAAGGT
CATCGGGAGGAAGAGCATGCGCTGTGTAATGGCCGCGCTGGGGCTGCTGG
TACTCTCGATAGGTCCCATCTCGCCCAAGGGTTCCTTCGTGACTGCCGAG
GCAGCAGATGGCGCTGCCGCCGCCGCCGCCGAGATTCCCCAAGAACCAAA
GGTGGACGCCGACGAGGACGGAATGGGGGGGGCGGAGGGAGAAGAGGAGC
CGGCCATCCCGGGGGCGACCGTCCAGGTGCTGACGGACGGCGACTTCGAG
AGGATTACGCAGGCGTCGACGGGGGCCACGACCGGCGACTGGTTCGTCGA
ATTTTACGCGCCGTGGTGTGGACACTGCCGAAAGCTGGACGGCACGTGGA
CAGAGCTTGCGGAGAAGCTTGGGGGCGAAGTGAACGTGGGCAAGGTGGAT
GCGACGGCGAACAGGGGGTTGGTGAAGCGGTTCGGCGTCAAGGGCTTCCC
GACGCTTTTGTTCTTCTCGCATGGGAACCTCCACAAGTTCGCTGGCCCTC
GCAAGCTCGATTCCTTCATCGAATTTGCCAAGGGAGGGTTCAAGAAGACG
GACTCTGTGCCTGTGCCCGGTCCCCCTTCCCTGGCTGGTGGCTTGAAGGG
ACTCCTGACCAGCGTGCTCAAGGATCTCGAAGGGGTAAAGGACGGAAAAA
TGCCGTCTCAGATGACGATCATGGTGCTGGTTGGGTCTCTTCTGCTTCTC
CTGGTGCTCTTCGCCACCACCACGCTTTCCAAGCCCCCGCCTCAGGCCCC
GTCGAAAAGAGCTAA
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Synonyms
The feature 'Ec-27_005660.2' has the following synonyms
Synonym
Esi0000_0146
Esi_0000_0146