Ec-27_005520.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005520.1
Unique NameEc-27_005520.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length253
Homology
The following BLAST results are available for this feature:
BLAST of Ec-27_005520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:4978275..4980583 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length759
Hectar predicted targeting categoryother localisation
Gene idEc-27_005520.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005520Ec-27_005520Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 4978275..4980583 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005520.1.4Ec-27_005520.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4978275..4978461 -
Ec-27_005520.1.3Ec-27_005520.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4978894..4979055 -
Ec-27_005520.1.2Ec-27_005520.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4979300..4979510 -
Ec-27_005520.1.1Ec-27_005520.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4980385..4980583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005520.1CDS:Ec-27_005520.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 4978275..4978461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005520.1Ec-27_005520.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 4978275..4980583 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005520.1 ID=Ec-27_005520.1|Name=Ec-27_005520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=253bp
MSLNTGVEPWSNSPPRSSCAKNKSVLLKARWRTGTGPPPSQGWDEVHGDS
SLPRTCDGWESGHFSSAFAAASRGTTAERRRTDGRWRGKENNHPNRTEPR
ANSQQGKRSSHPGLAIGPLQVSSVALRPFAHGELYRRPPQRLAGRKPLMA
PGVALSSSLAPIEPHGFDPLLLDKEALCIGSGISRGASLISQAAALRQKQ
LQFRHRAFQSTHKSAGLVRLISVMREDASSVATTGGGRDSGSRCSSRHRQ
RQ*
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spliced messenger RNA

>Ec-27_005520.1 ID=Ec-27_005520.1|Name=Ec-27_005520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=759bp|location=Sequence derived from alignment at chr_27:4978275..4980583- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCTGAACACTGGCGTTGAGCCATGGTCAAACTCCCCACCCCGTTC
CTCGTGCGCCAAGAATAAGTCGGTGTTGCTGAAGGCTCGATGGCGTACGG
GTACCGGACCTCCCCCTAGCCAAGGCTGGGATGAGGTACATGGCGACAGC
AGCTTACCTCGGACCTGCGATGGTTGGGAAAGTGGTCATTTCTCCTCAGC
ATTTGCTGCTGCTTCTCGAGGCACGACGGCAGAACGAAGAAGAACGGACG
GTCGCTGGCGAGGCAAGGAAAACAACCACCCCAACAGAACCGAACCACGG
GCCAATAGCCAGCAGGGTAAACGATCGTCCCACCCAGGCCTTGCGATCGG
CCCTCTGCAAGTATCATCGGTGGCCTTGCGGCCATTCGCTCACGGAGAGT
TATATAGAAGGCCACCCCAACGATTAGCCGGCCGGAAGCCGTTGATGGCC
CCGGGAGTCGCGCTTTCTTCCTCATTGGCTCCGATCGAACCACATGGCTT
CGACCCCCTACTCCTCGACAAAGAGGCTCTTTGCATAGGTAGCGGGATAT
CTCGGGGAGCTTCACTTATTAGCCAAGCCGCGGCCTTGAGGCAGAAGCAG
CTGCAGTTTCGACATAGGGCATTCCAGAGCACCCACAAGTCGGCGGGCTT
GGTGCGGTTGATATCTGTCATGAGGGAGGACGCGTCCTCCGTGGCTACCA
CTGGCGGGGGAAGAGATTCGGGATCACGTTGTAGCAGTCGCCACAGGCAG
CGGCAATAG
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protein sequence of Ec-27_005520.1

>Ec-27_005520.1 ID=Ec-27_005520.1|Name=Ec-27_005520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=253bp
MSLNTGVEPWSNSPPRSSCAKNKSVLLKARWRTGTGPPPSQGWDEVHGDS
SLPRTCDGWESGHFSSAFAAASRGTTAERRRTDGRWRGKENNHPNRTEPR
ANSQQGKRSSHPGLAIGPLQVSSVALRPFAHGELYRRPPQRLAGRKPLMA
PGVALSSSLAPIEPHGFDPLLLDKEALCIGSGISRGASLISQAAALRQKQ
LQFRHRAFQSTHKSAGLVRLISVMREDASSVATTGGGRDSGSRCSSRHRQ
RQ*
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mRNA from alignment at chr_27:4978275..4980583-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005520.1 ID=Ec-27_005520.1|Name=Ec-27_005520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2309bp|location=Sequence derived from alignment at chr_27:4978275..4980583- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGCCTGAACACTGGCGTTGAGCCATGGTCAAACTCCCCACCCCGTTC
CTCGTGCGCCAAGAATAAGTCGGTGTTGCTGAAGGCTCGATGGCGTACGG
GTACCGGACCTCCCCCTAGCCAAGGCTGGGATGAGGTACATGGCGACAGC
AGCTTACCTCGGACCTGCGATGGTTGGGAAAGTGGTCATTTCTCCTCAGG
TACTGTTCTTACAGTACTGTGCTGTGGGAAGGGGATACTCTCTGTCCTTC
TCTCCGGTGTACCACTTCGACTCTACGCTCATCTCCAGAGTCGTCCTTGT
CCGTCAATGCCGTCTATTTCTGCCGTTGTTGCAGTTATACAGATAGCGCC
CGCAGTAAAGAAAAGTCAAAATCGGGTGGAGCCTCAATCCCTTATTTTGG
GTCGAAGTACCGGCCCAAGTCGTCCATTTTCTGAAGAGGCATTTCTTACT
GCTTTGGACTGCTGTCACATCCTCCCGATTATCTTGTTCCTTACAAGTAC
TTCATATTTCTTATTTCTGTCTTTGATTTTGATCTCTCTGAGGACAATCA
ATCCACTTCATCAAGCCCTCAAGAGAGGTGGTGGAAAGTGCCATCAAACC
CGTACAACAGCGGAGAGCATGTGGTTGTCCGCGATGTGTGGCAGTACTAC
AGTTCAGCCCAGTGAACAGCAGGGGCGGGGGGGGGGGGGCGCGAAAATAA
CCACTCTCCCCCCCAAGCGTGTGCCCCCTACAAAAATTAATGCACTTCTG
TTCAGCTAGGTAGGGGGGTGGGAGCACCGAAGATTTCTGATATCATGGGG
GTATCGCACCATCATATTTCTTATTGGGGCGCTTCTTACGTTGTGGCCGA
GATTGAGCTATGTTTCTTCGCCCTTTTTTCTTATTTTTCGTAAAAAACTT
GAGCCGTTTTTTCTTAACAGAATTTTTCTTAACTGCGGGCGCTATCTGTC
CTGATCTGCGTTTACGCGCGTCGTTGCCCACAATATTATGCATGCATATG
TACGCAGAGCACCTGCCTCACCATCTAATTTGTGCCATATGGAAATATAT
TCCGCCCCTAAACCTCGGAACAGCATTTGCTGCTGCTTCTCGAGGCACGA
CGGCAGAACGAAGAAGAACGGACGGTCGCTGGCGAGGCAAGGAAAACAAC
CACCCCAACAGAACCGAACCACGGGCCAATAGCCAGCAGGGTAAACGATC
GTCCCACCCAGGCCTTGCGATCGGCCCTCTGCAAGTATCATCGGTGGCCT
TGCGGCCATTCGCTCACGGAGAGTTATATAGAAGGTGGGCAGCCCTTTTT
GCTTCCACTGGTCCAAACAAACCACACTAAATAAACGTTGAAACAATGCT
GCTGCTGCTGTACGTACAATATGGACTAATGACCGAACGTATACCTACGC
ATCGGGTGGGACTGATGCGTGCATGATCCTAGCTAAAGCATGCGAAACCC
TGCAAAACAACCATGTAGTCACCCCTTCTCAGCCCTCAAAATGCGTTCGT
CCGATTTTGGTGGGTTGGTGATAAACAGGCCACCCCAACGATTAGCCGGC
CGGAAGCCGTTGATGGCCCCGGGAGTCGCGCTTTCTTCCTCATTGGCTCC
GATCGAACCACATGGCTTCGACCCCCTACTCCTCGACAAAGAGGCTCTTT
GCATAGGTAGCGGGATATCTCGGGGAGCTTCACTTATTAGGTATGGGCAG
GATAGCGAGCACGAAGCGTTGTTTGGCTCCCCGTTCTTCGAGAGTTTATC
AACGTTTGTTATTCTGTAGTCGCTCTCACACTTGTTGACTTACACTCGAC
TTGGCAACGACGTACTGAAGGTCGTGAGAATGGGAATGCGTGTGGCAGAA
TCGATCGAAACATGCAACAGCGTTTCCCTGCCAAGTTACGAATGAGAGTA
ATATTTTTGTTCTGCTTCCAGACAACCAGCGCCATAATGTACCCAAGCAG
TTGTTGGTTCTTGCCGTGATCAGACTCCGGTCTTCCGCGCACGTGCCATT
GCGCAGGACGTGTATTGCAGGCACACACACAAAGAGAGCGCTTCCCCGAG
CACACTAAATATGTTACACATCCGAAGACGGTAATGTTGTCCTGTTGCCC
CTCTGTATGGAACATCTCTCAGCCAAGCCGCGGCCTTGAGGCAGAAGCAG
CTGCAGTTTCGACATAGGGCATTCCAGAGCACCCACAAGTCGGCGGGCTT
GGTGCGGTTGATATCTGTCATGAGGGAGGACGCGTCCTCCGTGGCTACCA
CTGGCGGGGGAAGAGATTCGGGATCACGTTGTAGCAGTCGCCACAGGCAG
CGGCAATAG
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Coding sequence (CDS) from alignment at chr_27:4978275..4980583-

>Ec-27_005520.1 ID=Ec-27_005520.1|Name=Ec-27_005520.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=759bp|location=Sequence derived from alignment at chr_27:4978275..4980583- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAGCCTGAACACTGGCGTTGAGCCATGGTCAAACTCCCCACCCCGTTC
CTCGTGCGCCAAGAATAAGTCGGTGTTGCTGAAGGCTCGATGGCGTACGG
GTACCGGACCTCCCCCTAGCCAAGGCTGGGATGAGGTACATGGCGACAGC
AGCTTACCTCGGACCTGCGATGGTTGGGAAAGTGGTCATTTCTCCTCAGC
ATTTGCTGCTGCTTCTCGAGGCACGACGGCAGAACGAAGAAGAACGGACG
GTCGCTGGCGAGGCAAGGAAAACAACCACCCCAACAGAACCGAACCACGG
GCCAATAGCCAGCAGGGTAAACGATCGTCCCACCCAGGCCTTGCGATCGG
CCCTCTGCAAGTATCATCGGTGGCCTTGCGGCCATTCGCTCACGGAGAGT
TATATAGAAGGCCACCCCAACGATTAGCCGGCCGGAAGCCGTTGATGGCC
CCGGGAGTCGCGCTTTCTTCCTCATTGGCTCCGATCGAACCACATGGCTT
CGACCCCCTACTCCTCGACAAAGAGGCTCTTTGCATAGGTAGCGGGATAT
CTCGGGGAGCTTCACTTATTAGCCAAGCCGCGGCCTTGAGGCAGAAGCAG
CTGCAGTTTCGACATAGGGCATTCCAGAGCACCCACAAGTCGGCGGGCTT
GGTGCGGTTGATATCTGTCATGAGGGAGGACGCGTCCTCCGTGGCTACCA
CTGGCGGGGGAAGAGATTCGGGATCACGTTGTAGCAGTCGCCACAGGCAG
CGGCAATAG
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Synonyms
The feature 'Ec-27_005520.1' has the following synonyms
Synonym
Esi000_0752
Esi_000_0752