Ec-27_005460.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005460.1
Unique NameEc-27_005460.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length83
Homology
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: D8LB28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB28_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 2.930e-60
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 MPIRVYPQPTRVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMLTRTDIYAESPWDM 246
            MPIRVYPQPTRVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMLTRTDIYAESPWDM
Sbjct:    1 MPIRVYPQPTRVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMLTRTDIYAESPWDM 82
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: A0A6H5KM86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM86_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.570e-33
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:   22 QPTRVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMLTRTDIYAESP 237
            Q T VYPFCSGCGTSRSTGTSTWCSKC RQASLCA+CDLPVVGLY+ECPGCHHGGHAEH+M    ++ +E P
Sbjct:  542 QNTTVYPFCSGCGTSRSTGTSTWCSKCERQASLCALCDLPVVGLYVECPGCHHGGHAEHLM-NWFEVSSECP 612
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: A0A8H2XTT6_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H2XTT6_9AGAM)

HSP 1 Score: 61.2 bits (147), Expect = 4.690e-9
Identity = 30/65 (46.15%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   28 TRVYPFCSGCGTSRST---------GTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAE 195
            T +Y  C  CG +  T         G S +C+KC R AS CA+C LPV GLY  C  C HGGH E
Sbjct: 1086 TTIYSACGRCGKTLPTVTQSENSARGQSAFCTKCKRFASKCAICRLPVKGLYFMCLECSHGGHQE 1150
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: A0A066VPQ6_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Rhizoctonia solani AG-8 WAC10335 TaxID=1287689 RepID=A0A066VPQ6_9AGAM)

HSP 1 Score: 60.8 bits (146), Expect = 6.420e-9
Identity = 30/65 (46.15%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   28 TRVYPFCSGCGTSRSTGT---------STWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAE 195
            T +Y  C  CG +  T T         S +C+KC R AS CA+C LPV GLY  C  C HGGH E
Sbjct: 1154 TTIYSACGRCGKTLPTATQSEKSARGQSAFCAKCKRFASKCAICRLPVKGLYFLCLECSHGGHQE 1218
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: A0A8H3DSM1_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3DSM1_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 1.640e-8
Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   28 TRVYPFCSGCGTSR---------STGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAE 195
            T +Y  C  CG +          + G S +C+KC R AS CA+C LPV GLY  C  C HGGH E
Sbjct: 1081 TTIYSACGRCGKTLPIVTQSENGARGQSAFCAKCKRFASKCAICRLPVKGLYFMCLECSHGGHQE 1145
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: A0A074RRI5_9AGAM (WD domain, G-beta repeat protein n=4 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074RRI5_9AGAM)

HSP 1 Score: 59.7 bits (143), Expect = 1.640e-8
Identity = 29/65 (44.62%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:   28 TRVYPFCSGCGTSRST---------GTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAE 195
            T +Y  C  CG +  T         G S +C+KC R  S CA+C LPV GLY  C  C HGGH E
Sbjct: 1101 TTIYSACGRCGKTLPTVTQSEKSVRGQSAFCTKCKRLVSKCAICRLPVKGLYFLCLECSHGGHQE 1165
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: A0A8H7LXS6_9AGAM (WD40 repeats protein (Fragment) n=3 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7LXS6_9AGAM)

HSP 1 Score: 58.9 bits (141), Expect = 3.080e-8
Identity = 29/65 (44.62%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   28 TRVYPFCSGCGTSR---------STGTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAE 195
            T +Y  C  CG +          + G S +C+KC R AS CA+C LPV GLY  C  C HGGH E
Sbjct: 1507 TTIYSACGRCGKTLPIVTKSENGARGQSGFCTKCKRFASKCAICRLPVKGLYFMCLECSHGGHQE 1571
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: T2M6F6_HYDVU (GATOR complex protein WDR24 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2M6F6_HYDVU)

HSP 1 Score: 58.5 bits (140), Expect = 4.100e-8
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 1 
Query:   28 TRVYPFCSGCGTSRSTGTSTW-CSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHM 201
            T V+  C  C    S+ +  W C  C R A +CA+C +PV GLY+ C GC HGGH  H+
Sbjct:  670 TVVHMQCGICYKVLSSTSHGWYCRNCKRSAQICAICHIPVKGLYLWCQGCGHGGHLNHI 728
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: A0A0K6GCS3_9AGAM (WD repeat-containing protein 59 n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6GCS3_9AGAM)

HSP 1 Score: 58.2 bits (139), Expect = 5.710e-8
Identity = 29/65 (44.62%), Postives = 34/65 (52.31%), Query Frame = 1 
Query:   28 TRVYPFCSGCGTSRST---------GTSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAE 195
            T +Y  C  CG +  T         G S +C KC + AS CA+C LPV GLY  C  C HGGH E
Sbjct: 1097 TIIYSACGRCGKTLPTVTQSEKGVRGQSAFCPKCKKFASKCAICRLPVKGLYFLCLECSHGGHQE 1161
[Close]
BLAST of Ec-27_005460.1 vs. uniprot
Match: A0A8B6CAR7_MYTGA (WD repeat-containing protein 24 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6CAR7_MYTGA)

HSP 1 Score: 52.8 bits (125), Expect = 1.640e-6
Identity = 21/42 (50.00%), Postives = 25/42 (59.52%), Query Frame = 1 
Query:   91 CSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMMLTRT 216
            C KC    + CAVC LPV GL++ C GC HGGH  H+    T
Sbjct:  114 CHKCKSVINSCAVCHLPVKGLFVWCQGCSHGGHINHIQEWLT 155
The following BLAST results are available for this feature:
BLAST of Ec-27_005460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LB28_ECTSI2.930e-60100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM86_9PHAE1.570e-3379.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8H2XTT6_9AGAM4.690e-946.15Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A066VPQ6_9AGAM6.420e-946.15Uncharacterized protein (Fragment) n=1 Tax=Rhizoct... [more]
A0A8H3DSM1_9AGAM1.640e-844.62Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A074RRI5_9AGAM1.640e-844.62WD domain, G-beta repeat protein n=4 Tax=Rhizocton... [more]
A0A8H7LXS6_9AGAM3.080e-844.62WD40 repeats protein (Fragment) n=3 Tax=Rhizoctoni... [more]
T2M6F6_HYDVU4.100e-844.07GATOR complex protein WDR24 n=2 Tax=Hydra vulgaris... [more]
A0A0K6GCS3_9AGAM5.710e-844.62WD repeat-containing protein 59 n=1 Tax=Rhizoctoni... [more]
A0A8B6CAR7_MYTGA1.640e-650.00WD repeat-containing protein 24 n=1 Tax=Mytilus ga... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:4937546..4938400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score63.5
Seed ortholog evalue5.2e-08
Seed eggNOG ortholog7213.XP_004523322.1
Length249
KEGG koko:K20408
KEGG Pathwayko04150,map04150
Hectar predicted targeting categorymitochondrion
Gene idEc-27_005460.1
GOsGO:0000323,GO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005767,GO:0005773,GO:0005776,GO:0006873,GO:0006885,GO:0006950,GO:0006996,GO:0007033,GO:0007035,GO:0007040,GO:0007042,GO:0007154,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010647,GO:0016043,GO:0016239,GO:0016241,GO:0019222,GO:0019725,GO:0023051,GO:0023056,GO:0030003,GO:0030004,GO:0030307,GO:0030641,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032008,GO:0032991,GO:0033554,GO:0034198,GO:0035751,GO:0035859,GO:0040008,GO:0042592,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0044754,GO:0045851,GO:0045927,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051452,GO:0051453,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0061700,GO:0065007,GO:0065008,GO:0071496,GO:0071840,GO:0080171,GO:0098771,GO:1902531,GO:1902533,GO:1903432,GO:1904263,GO:1990928
EggNOG free text desc.WD domain, G-beta repeat
EggNOG OGs38HMY@33154,3BKC0@33208,3CRDD@33213,3SHV7@50557,41Y4A@6656,450HA@7147,KOG0269@1,KOG0269@2759
COG Functional cat.S
Best tax levelDiptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005460Ec-27_005460Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 4937546..4938400 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005460.1.1Ec-27_005460.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4937546..4937749 +
Ec-27_005460.1.2Ec-27_005460.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4938356..4938400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005460.1CDS:Ec-27_005460.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 4937546..4937749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005460.1Ec-27_005460.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 4937546..4938400 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005460.1 ID=Ec-27_005460.1|Name=Ec-27_005460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=83bp
MPIRVYPQPTRVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVG
LYIECPGCHHGGHAEHMMLTRTDIYAESPWDM*
back to top

spliced messenger RNA

>Ec-27_005460.1 ID=Ec-27_005460.1|Name=Ec-27_005460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=249bp|location=Sequence derived from alignment at chr_27:4937546..4938400+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGATACGTGTGTACCCCCAACCTACCAGGGTGTACCCTTTCTGCTC
CGGTTGTGGAACCTCTCGCTCCACCGGCACCTCCACCTGGTGCAGCAAGT
GCGCCCGGCAAGCGTCGTTGTGCGCCGTGTGCGACCTTCCCGTCGTGGGG
CTGTACATCGAGTGCCCCGGGTGCCACCACGGGGGGCACGCGGAACACAT
GATGCTGACCCGGACGGATATTTACGCTGAGTCCCCGTGGGACATGTAA
back to top

protein sequence of Ec-27_005460.1

>Ec-27_005460.1 ID=Ec-27_005460.1|Name=Ec-27_005460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=83bp
MPIRVYPQPTRVYPFCSGCGTSRSTGTSTWCSKCARQASLCAVCDLPVVG
LYIECPGCHHGGHAEHMMLTRTDIYAESPWDM*
back to top

mRNA from alignment at chr_27:4937546..4938400+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005460.1 ID=Ec-27_005460.1|Name=Ec-27_005460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=855bp|location=Sequence derived from alignment at chr_27:4937546..4938400+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGATACGTGTGTACCCCCAACCTACCAGGGTGTACCCTTTCTGCTC
CGGTTGTGGAACCTCTCGCTCCACCGGCACCTCCACCTGGTGCAGCAAGT
GCGCCCGGCAAGCGTCGTTGTGCGCCGTGTGCGACCTTCCCGTCGTGGGG
CTGTACATCGAGTGCCCCGGGTGCCACCACGGGGGGCACGCGGAACACAT
GATGGTGAGTGTGAGAAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGTTTTGTGCACGTGTGCATACCGTAATAATATTTGTATTCT
TCTGCCATCACCACGGAACACATCGGAGCACACACCCCTCTGCTGGTTGC
AGAGCAACCTCTTGCTCGTTATTATGCCCTCGGTGACGGTGACCTACTGC
TTTCGGCACCTGAATGGTCTGGCGTAGTAGGTACAAACGTAGGTCACGTG
TTTGCGGACGCTCACGCGTTCTTGCCATGAAGCGGGTCGCGCCGGAAACT
CAGCTCACACCGCCCCCCGCCCCACCTCATCTTGGCTGTGCGTCTCGCCC
TGTAGAACTGGTTCGCTGTTTCGAGTGAATGCCCGGTAGAGACGTGCTCC
CACGTGTGCAGACCTTGTCTCACCGGGACGCTCAAGCCCGAAGCCGCGAT
TGGGACGGCTGCCGAGCTCCGACAGTGGCAAGAGTTCCACAGTAGTTTGC
GGTTAAGCGATCGATAGGTTAGCTCGAAGAAATCTAGCCTTTCTGCGCGA
TGCTTCACTGTATTCGTTTTGATTCGCACGTTGTCCCTGCCTCGCTGGGG
CTGGCTGCAGCTGACCCGGACGGATATTTACGCTGAGTCCCCGTGGGACA
TGTAA
back to top

Coding sequence (CDS) from alignment at chr_27:4937546..4938400+

>Ec-27_005460.1 ID=Ec-27_005460.1|Name=Ec-27_005460.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=249bp|location=Sequence derived from alignment at chr_27:4937546..4938400+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGATACGTGTGTACCCCCAACCTACCAGGGTGTACCCTTTCTGCTC
CGGTTGTGGAACCTCTCGCTCCACCGGCACCTCCACCTGGTGCAGCAAGT
GCGCCCGGCAAGCGTCGTTGTGCGCCGTGTGCGACCTTCCCGTCGTGGGG
CTGTACATCGAGTGCCCCGGGTGCCACCACGGGGGGCACGCGGAACACAT
GATGCTGACCCGGACGGATATTTACGCTGAGTCCCCGTGGGACATGTAA
back to top
Synonyms
The feature 'Ec-27_005460.1' has the following synonyms
Synonym
Esi0000_0202
Esi_0000_0202