Ec-27_005390.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005390.1
Unique NameEc-27_005390.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length38
Homology
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BLAST of Ec-27_005390.1 vs. uniprot
Match: D8LB34_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB34_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.330e-6
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 MSLPSYADWLYLDEDLLDITDEPLQ 75
            MSLPSYADWLYLDEDLLDITDE ++
Sbjct:    1 MSLPSYADWLYLDEDLLDITDEEIE 25
The following BLAST results are available for this feature:
BLAST of Ec-27_005390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB34_ECTSI2.330e-688.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:4869495..4869868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length114
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-27_005390.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005390Ec-27_005390Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 4869495..4869868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005390.1.2Ec-27_005390.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4869495..4869542 -
Ec-27_005390.1.1Ec-27_005390.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4869803..4869868 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005390.1CDS:Ec-27_005390.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 4869495..4869542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005390.1Ec-27_005390.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 4869495..4869868 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005390.1 ID=Ec-27_005390.1|Name=Ec-27_005390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=38bp
MSLPSYADWLYLDEDLLDITDEPLQWKNGSFRHKVVR*
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spliced messenger RNA

>Ec-27_005390.1 ID=Ec-27_005390.1|Name=Ec-27_005390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=114bp|location=Sequence derived from alignment at chr_27:4869495..4869868- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCTGCCTTCCTACGCGGACTGGTTATACCTCGACGAGGATCTTTT
AGATATAACGGACGAGCCACTGCAGTGGAAGAATGGAAGTTTCAGGCACA
AGGTGGTGCGCTAA
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protein sequence of Ec-27_005390.1

>Ec-27_005390.1 ID=Ec-27_005390.1|Name=Ec-27_005390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=38bp
MSLPSYADWLYLDEDLLDITDEPLQWKNGSFRHKVVR*
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mRNA from alignment at chr_27:4869495..4869868-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005390.1 ID=Ec-27_005390.1|Name=Ec-27_005390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=374bp|location=Sequence derived from alignment at chr_27:4869495..4869868- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTCTGCCTTCCTACGCGGACTGGTTATACCTCGACGAGGATCTTTT
AGATATAACGGACGAGGTACGTTGTCCATCCTAGCTGCGACGAAGTACTG
AAGGTTCTGTACGAGATCGACGCTGTAGGCGTGCACTTCCCTCGGTGTCC
AGCCCGTTTGCAGAATTATGCGAAAGGGCGCCTCCGATTGGCCATGACAG
CGAGCAGTAGTAGAACACGCACGAAACCAAGACACCGAAATGCATATCGT
GATCATCTATGTACAGTAGGTCACACATCACATAGCGTTGTTCCCGACGG
ATGTTCATTCTGTGCCAACGGAACAGCCACTGCAGTGGAAGAATGGAAGT
TTCAGGCACAAGGTGGTGCGCTAA
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Coding sequence (CDS) from alignment at chr_27:4869495..4869868-

>Ec-27_005390.1 ID=Ec-27_005390.1|Name=Ec-27_005390.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=114bp|location=Sequence derived from alignment at chr_27:4869495..4869868- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCTCTGCCTTCCTACGCGGACTGGTTATACCTCGACGAGGATCTTTT
AGATATAACGGACGAGCCACTGCAGTGGAAGAATGGAAGTTTCAGGCACA
AGGTGGTGCGCTAA
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Synonyms
The feature 'Ec-27_005390.1' has the following synonyms
Synonym
Esi0000_0219
Esi_0000_0219