Ec-27_005380.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-27_005380.1
Unique Name	Ec-27_005380.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	851

Homology

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BLAST of Ec-27_005380.1 vs. uniprot
Match: D8LB35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB35_ECTSI)

HSP 1 Score: 1697 bits (4395), Expect = 0.000e+0
Identity = 850/850 (100.00%), Postives = 850/850 (100.00%), Query Frame = 1

Query:    1 MGWGVHSGIGDDENGADDECLPTLRTHSLDGVVVPDSVLKEWRRRKGLGAPAEQAVQQSAVAKGGGTEVAIGGRFSSPASPRPGATLSRCLRRIKKMAPLDERGMWLLNNLLSQTRVEDQEELCWSVQDKLSKRKGALIRSKDRLKLECDRRCVFTRATNEVRTTSAMTAQANRCNILATVVKEHQNARRSNDQSRRHRQPPDNTNSAANTAPLAPPSTTADRRKEKGALRGKEVAKEKEVAREIISLNEKEGSNDRRVSKAEGRGSPPEYPSSILLSINMAKMRSSGEMVAAGGDATLPRRAGRTRPNRTRNAPFARHGGLLQVAASEECVVPPASSSLHGRDVPALAEGAPVAVGKTRGGRYQKKKPMGRVGRLGLPSISERYGTSVMENWVQSPVALKLERPRCKSVAIAHLDQPAYREYMEAVIRVRAAQTRRRWQQSTRDDTDGVGQGVTGCWKGTTNDCGIILTTQQEGKTTLGCSSHLCHVEPRAFNSQNPPKISLPTSCSNLGGGGKGMFGRTSCEIEKRLHHGEDDERGEFGRARLRTLTKTTSHAPGHGSDISKIATADEILTSEGLGLRSKGARKVFKQTQRLLEALRTPSESCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATVGDRLHRGGGGDPGGDAKVTDPKFSDSGMWRAPRGNRSARLKEVLDCVAPPHTVRIECEIILHESLSRAGDRREGNGGTSGGGGSGTWDDFVFAWECLGDGILAGRALSGYWEHAHQDGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRDQLFVEWLDELLEVVRTHVRRACLRVPVQHGLTAGLEWFQEWKVDYHQIQG 2550
            MGWGVHSGIGDDENGADDECLPTLRTHSLDGVVVPDSVLKEWRRRKGLGAPAEQAVQQSAVAKGGGTEVAIGGRFSSPASPRPGATLSRCLRRIKKMAPLDERGMWLLNNLLSQTRVEDQEELCWSVQDKLSKRKGALIRSKDRLKLECDRRCVFTRATNEVRTTSAMTAQANRCNILATVVKEHQNARRSNDQSRRHRQPPDNTNSAANTAPLAPPSTTADRRKEKGALRGKEVAKEKEVAREIISLNEKEGSNDRRVSKAEGRGSPPEYPSSILLSINMAKMRSSGEMVAAGGDATLPRRAGRTRPNRTRNAPFARHGGLLQVAASEECVVPPASSSLHGRDVPALAEGAPVAVGKTRGGRYQKKKPMGRVGRLGLPSISERYGTSVMENWVQSPVALKLERPRCKSVAIAHLDQPAYREYMEAVIRVRAAQTRRRWQQSTRDDTDGVGQGVTGCWKGTTNDCGIILTTQQEGKTTLGCSSHLCHVEPRAFNSQNPPKISLPTSCSNLGGGGKGMFGRTSCEIEKRLHHGEDDERGEFGRARLRTLTKTTSHAPGHGSDISKIATADEILTSEGLGLRSKGARKVFKQTQRLLEALRTPSESCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATVGDRLHRGGGGDPGGDAKVTDPKFSDSGMWRAPRGNRSARLKEVLDCVAPPHTVRIECEIILHESLSRAGDRREGNGGTSGGGGSGTWDDFVFAWECLGDGILAGRALSGYWEHAHQDGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRDQLFVEWLDELLEVVRTHVRRACLRVPVQHGLTAGLEWFQEWKVDYHQIQG
Sbjct:    1 MGWGVHSGIGDDENGADDECLPTLRTHSLDGVVVPDSVLKEWRRRKGLGAPAEQAVQQSAVAKGGGTEVAIGGRFSSPASPRPGATLSRCLRRIKKMAPLDERGMWLLNNLLSQTRVEDQEELCWSVQDKLSKRKGALIRSKDRLKLECDRRCVFTRATNEVRTTSAMTAQANRCNILATVVKEHQNARRSNDQSRRHRQPPDNTNSAANTAPLAPPSTTADRRKEKGALRGKEVAKEKEVAREIISLNEKEGSNDRRVSKAEGRGSPPEYPSSILLSINMAKMRSSGEMVAAGGDATLPRRAGRTRPNRTRNAPFARHGGLLQVAASEECVVPPASSSLHGRDVPALAEGAPVAVGKTRGGRYQKKKPMGRVGRLGLPSISERYGTSVMENWVQSPVALKLERPRCKSVAIAHLDQPAYREYMEAVIRVRAAQTRRRWQQSTRDDTDGVGQGVTGCWKGTTNDCGIILTTQQEGKTTLGCSSHLCHVEPRAFNSQNPPKISLPTSCSNLGGGGKGMFGRTSCEIEKRLHHGEDDERGEFGRARLRTLTKTTSHAPGHGSDISKIATADEILTSEGLGLRSKGARKVFKQTQRLLEALRTPSESCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATVGDRLHRGGGGDPGGDAKVTDPKFSDSGMWRAPRGNRSARLKEVLDCVAPPHTVRIECEIILHESLSRAGDRREGNGGTSGGGGSGTWDDFVFAWECLGDGILAGRALSGYWEHAHQDGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRDQLFVEWLDELLEVVRTHVRRACLRVPVQHGLTAGLEWFQEWKVDYHQIQG 850

[Close]

BLAST of Ec-27_005380.1 vs. uniprot
Match: A0A6H5KQT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQT4_9PHAE)

HSP 1 Score: 966 bits (2497), Expect = 0.000e+0
Identity = 512/638 (80.25%), Postives = 530/638 (83.07%), Query Frame = 1

Query:  502 MTAQANRCNILATVVKEHQNARRSNDQSRRHRQPPDNTNSAANTAPLAPPSTTADRRKEKGALRGKEVAKEKEVAREIISLNEKEGSNDRRVSKAEGRGSPPEYPSSILLSINMAKMRSSGEMVAAGGDATLPRRAGRTRPNRTRNAPFARHGGLLQVAASEECVVPPASSSLHGRDVPALAEGAPVAVGKTRGGRYQKKKPMGRVGRLGLPSISERYGTSVMENWVQSPVALKLERPRCKSVAIAHLDQPAYREYMEAVIRVRAAQTRRRWQQSTRDDTDGVGQGVTGCWKGTTNDCGIILTTQQEGKTTLGCSSHLCHVEPRAFNSQNPPKISLPTSCSNLGGGGKGMFGRTSCEIEKRLHHGEDDERGEFGRARLRTLTKTTSHAPGHGSDISKIATADEILTSEGLGLRSKGARKVFKQTQRLLEALRTPSESCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATVGDRLHRGGGGDPGGDAKVTDPKFSDSGMWRAPRGNRSARLKEVLDCVAPPHTVRIECEIILHESLSRAGDRREGNGGTSGGGGSGTWDDFVFAWECLGDGILAGRALSGYWEHAHQDGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRDQLFVE 2415
            MTA+ANRCN+LAT+VKEHQNARR NDQSRR   P D TNS A TAPLA PS TADRRK KGALRGKE AKEKEV        EKEGS DRRVSKAEGRGSPP  PSSI LSI+MAKM+SSGE+ AAGGDATLPRRA R RP RTRNAP A HGGLLQVAASEECVVPPA  SL GRDVPALAEG PV     RGGRY+K KP GRV RLGLPSISERYG SV+ENWV SPV+LKLERPRCKSVAIAHLDQPAYR YME ++RV AAQTRRRW+QST DDTDGVGQGVTGCWKGTTNDC  ILT QQ+GK  +G SSH C VEPR FNS+ PP         N+GGGGKGMFGRTSCE+EK L HGEDDERGE GR RL TLTKT S APGHG D S IATADEILTSEGL LRSKGARKVFKQTQRLLEALRTPS SCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATV DRLHRGGGGDP GDAKVTDPKFSD GMWRAPRG+RSARLKEVLDCVAPPHTVRIE EIILHESLSRAGD RE N GTSGGG SGTWDDFVFAWE                     DGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRDQLFVE
Sbjct:    1 MTAEANRCNMLATIVKEHQNARRCNDQSRR---PLDKTNSGATTAPLASPSFTADRRKGKGALRGKEAAKEKEVXXXXXXXXEKEGSKDRRVSKAEGRGSPPGRPSSIPLSIHMAKMQSSGEIEAAGGDATLPRRAERKRPKRTRNAPLAGHGGLLQVAASEECVVPPAFFSLSGRDVPALAEGIPVTACGVRGGRYEKNKPTGRVARLGLPSISERYGASVIENWVLSPVSLKLERPRCKSVAIAHLDQPAYRAYMEEIVRVGAAQTRRRWRQSTLDDTDGVGQGVTGCWKGTTNDCSNILTNQQQGKAAVGWSSHRCDVEPRVFNSKRPP---------NIGGGGKGMFGRTSCEMEKGLPHGEDDERGELGRTRLSTLTKTPSRAPGHGRDSSTIATADEILTSEGLELRSKGARKVFKQTQRLLEALRTPSASCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATVRDRLHRGGGGDPDGDAKVTDPKFSDGGMWRAPRGDRSARLKEVLDCVAPPHTVRIESEIILHESLSRAGDGREDNEGTSGGG-SGTWDDFVFAWE---------------------DGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRDQLFVE 604

The following BLAST results are available for this feature:

BLAST of Ec-27_005380.1 vs. uniprot

BLAST of Ec-27_005380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LB35_ECTSI	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KQT4_9PHAE	0.000e+0	80.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:4855739..4861024 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2553
Hectar predicted targeting category	other localisation
Gene id	Ec-27_005380.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-27_005380	Ec-27_005380	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_27 4855739..4861024 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_005380.1	Ec-27_005380.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_27 4855739..4861024 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_005380.1.1	Ec-27_005380.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 4855739..4856080 +
Ec-27_005380.1.2	Ec-27_005380.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 4857125..4857237 +
Ec-27_005380.1.3	Ec-27_005380.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 4858047..4859808 +
Ec-27_005380.1.4	Ec-27_005380.1.4	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 4860135..4860332 +
Ec-27_005380.1.5	Ec-27_005380.1.5	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 4860793..4860897 +
Ec-27_005380.1.6	Ec-27_005380.1.6	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_27 4860992..4861024 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-27_005380.1	CDS:Ec-27_005380.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_27 4855739..4856080 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_27:4855739..4861024+
coding sequence from alignment at chr_27:4855739..4861024+

mRNA sequence

>Ec-27_005380.1 ID=Ec-27_005380.1|Name=Ec-27_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=851bp
MGWGVHSGIGDDENGADDECLPTLRTHSLDGVVVPDSVLKEWRRRKGLGA
PAEQAVQQSAVAKGGGTEVAIGGRFSSPASPRPGATLSRCLRRIKKMAPL
DERGMWLLNNLLSQTRVEDQEELCWSVQDKLSKRKGALIRSKDRLKLECD
RRCVFTRATNEVRTTSAMTAQANRCNILATVVKEHQNARRSNDQSRRHRQ
PPDNTNSAANTAPLAPPSTTADRRKEKGALRGKEVAKEKEVAREIISLNE
KEGSNDRRVSKAEGRGSPPEYPSSILLSINMAKMRSSGEMVAAGGDATLP
RRAGRTRPNRTRNAPFARHGGLLQVAASEECVVPPASSSLHGRDVPALAE
GAPVAVGKTRGGRYQKKKPMGRVGRLGLPSISERYGTSVMENWVQSPVAL
KLERPRCKSVAIAHLDQPAYREYMEAVIRVRAAQTRRRWQQSTRDDTDGV
GQGVTGCWKGTTNDCGIILTTQQEGKTTLGCSSHLCHVEPRAFNSQNPPK
ISLPTSCSNLGGGGKGMFGRTSCEIEKRLHHGEDDERGEFGRARLRTLTK
TTSHAPGHGSDISKIATADEILTSEGLGLRSKGARKVFKQTQRLLEALRT
PSESCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATVGDRLHR
GGGGDPGGDAKVTDPKFSDSGMWRAPRGNRSARLKEVLDCVAPPHTVRIE
CEIILHESLSRAGDRREGNGGTSGGGGSGTWDDFVFAWECLGDGILAGRA
LSGYWEHAHQDGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRD
QLFVEWLDELLEVVRTHVRRACLRVPVQHGLTAGLEWFQEWKVDYHQIQG
*

spliced messenger RNA

>Ec-27_005380.1 ID=Ec-27_005380.1|Name=Ec-27_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2553bp|location=Sequence derived from alignment at chr_27:4855739..4861024+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATGGGGTGTGCACTCTGGTATTGGCGACGACGAGAATGGAGCAGA
CGACGAGTGTCTCCCCACTCTCCGGACGCATTCCCTCGACGGCGTCGTGG
TCCCCGACTCTGTTTTGAAGGAGTGGAGGCGACGCAAGGGGCTTGGAGCG
CCGGCAGAGCAAGCAGTGCAGCAGTCGGCAGTAGCGAAGGGGGGAGGCAC
AGAGGTGGCGATAGGCGGACGTTTTAGCTCTCCTGCTTCTCCACGACCTG
GTGCGACGTTGAGCCGCTGCCTGCGGCGAATCAAGAAGATGGCGCCGTTA
GATGAGCGGGGCATGTGGCTTCTAAACAACCTCCTTTCGCAGACAAGAGT
GGAGGACCAGGAAGAACTTTGTTGGTCTGTCCAAGACAAGTTGAGCAAGC
GAAAGGGGGCCCTCATCCGATCGAAGGATCGTCTCAAGCTGGAGTGCGAC
CGAAGATGCGTGTTCACCAGAGCCACGAACGAGGTCCGCACCACCAGCGC
CATGACGGCGCAGGCCAACCGGTGCAACATACTGGCGACCGTCGTCAAGG
AACATCAAAATGCCAGGCGTTCCAACGACCAAAGTCGCCGACACAGGCAG
CCCCCTGACAACACAAACTCCGCTGCAAATACGGCCCCTCTTGCGCCCCC
CTCTACCACCGCGGACCGCCGTAAGGAGAAGGGTGCACTGCGGGGAAAGG
AGGTTGCAAAGGAAAAAGAAGTGGCCAGGGAAATAATTAGTTTGAACGAA
AAGGAGGGCTCAAATGACAGAAGAGTTTCAAAGGCAGAAGGTAGAGGGTC
CCCACCCGAATACCCGTCATCCATCCTTCTGTCAATCAACATGGCGAAGA
TGCGATCATCGGGGGAAATGGTAGCAGCCGGCGGCGATGCCACTTTACCT
CGCAGAGCCGGAAGAACACGTCCCAATAGGACGCGGAACGCACCGTTTGC
TCGCCACGGTGGCCTCCTACAGGTCGCTGCATCCGAGGAGTGTGTCGTCC
CACCAGCCTCCTCTAGTCTTCACGGGCGGGATGTGCCAGCACTAGCCGAG
GGTGCCCCTGTGGCTGTTGGCAAGACCAGGGGGGGGCGCTACCAGAAGAA
AAAGCCGATGGGGCGGGTGGGACGCCTCGGGCTGCCTTCGATATCGGAGC
GATATGGTACAAGCGTGATGGAAAATTGGGTACAGTCGCCCGTCGCGCTG
AAACTCGAGCGGCCACGATGTAAGAGCGTGGCCATCGCACATCTCGATCA
GCCGGCGTATAGGGAATACATGGAGGCGGTCATACGAGTGAGAGCAGCTC
AGACCCGACGACGGTGGCAACAATCGACGCGGGATGATACAGATGGCGTG
GGACAGGGGGTAACAGGCTGCTGGAAAGGGACCACCAACGATTGTGGCAT
CATTTTGACGACTCAGCAGGAGGGAAAGACGACGCTAGGTTGTTCCTCCC
ACCTTTGTCATGTCGAGCCCCGGGCTTTCAACAGCCAAAACCCACCTAAG
ATTTCGCTACCTACTTCGTGTTCCAATCTTGGAGGAGGAGGAAAGGGAAT
GTTTGGTCGCACGAGCTGCGAAATAGAGAAACGCCTACACCACGGAGAAG
ACGATGAGCGTGGAGAATTCGGCAGAGCGCGTCTGAGAACACTGACCAAA
ACCACCAGCCATGCCCCCGGGCACGGCAGTGACATCAGCAAAATAGCCAC
CGCCGACGAGATTCTCACTTCGGAGGGGCTAGGGCTTCGCTCCAAAGGTG
CCCGCAAGGTTTTCAAGCAGACTCAGCGGCTGCTCGAGGCCTTGCGCACG
CCAAGTGAAAGCTGCCAGTACGACCCCGAGACCGGGGCTCGCCGAAACTG
CGGGGGTGGCAACATTGGAGGACACTCGAGCGTTGTCGTCCACTACCACC
AAAGCCACTCGGGGAGCGGGCCTGCGACTGTAGGGGATAGGCTCCATCGC
GGTGGTGGCGGTGACCCCGGTGGCGACGCGAAAGTCACCGATCCCAAGTT
CAGCGATAGTGGAATGTGGCGAGCACCTCGAGGGAACAGGTCGGCGCGTC
TTAAGGAGGTTCTTGACTGCGTGGCCCCCCCGCACACCGTGCGCATTGAG
TGCGAGATCATCTTGCATGAATCGCTAAGCCGCGCTGGCGACAGGCGTGA
AGGCAACGGAGGGACAAGCGGCGGTGGTGGCAGCGGCACATGGGACGACT
TTGTGTTTGCGTGGGAGTGCTTGGGTGACGGGATCTTGGCTGGGAGAGCG
CTGAGTGGGTACTGGGAACATGCCCACCAGGACGGTAGCGACCATACCCC
TACCAACGGGAGGTTGCAACGGGCCGCAGATGACCTTCTGTCCGACGGAT
TGATGCGCGCGTTGCTTTCTACGAGGTGCTACCGGCCGCCGGGGCGGGAC
CAGCTTTTCGTGGAGTGGTTGGATGAGCTCTTGGAAGTCGTCAGAACTCA
TGTTCGGCGAGCCTGTTTGAGGGTCCCCGTGCAACATGGCTTGACGGCGG
GGTTGGAGTGGTTTCAAGAGTGGAAGGTAGACTATCATCAAATTCAAGGT
TGA

protein sequence of Ec-27_005380.1

>Ec-27_005380.1 ID=Ec-27_005380.1|Name=Ec-27_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=851bp
MGWGVHSGIGDDENGADDECLPTLRTHSLDGVVVPDSVLKEWRRRKGLGA
PAEQAVQQSAVAKGGGTEVAIGGRFSSPASPRPGATLSRCLRRIKKMAPL
DERGMWLLNNLLSQTRVEDQEELCWSVQDKLSKRKGALIRSKDRLKLECD
RRCVFTRATNEVRTTSAMTAQANRCNILATVVKEHQNARRSNDQSRRHRQ
PPDNTNSAANTAPLAPPSTTADRRKEKGALRGKEVAKEKEVAREIISLNE
KEGSNDRRVSKAEGRGSPPEYPSSILLSINMAKMRSSGEMVAAGGDATLP
RRAGRTRPNRTRNAPFARHGGLLQVAASEECVVPPASSSLHGRDVPALAE
GAPVAVGKTRGGRYQKKKPMGRVGRLGLPSISERYGTSVMENWVQSPVAL
KLERPRCKSVAIAHLDQPAYREYMEAVIRVRAAQTRRRWQQSTRDDTDGV
GQGVTGCWKGTTNDCGIILTTQQEGKTTLGCSSHLCHVEPRAFNSQNPPK
ISLPTSCSNLGGGGKGMFGRTSCEIEKRLHHGEDDERGEFGRARLRTLTK
TTSHAPGHGSDISKIATADEILTSEGLGLRSKGARKVFKQTQRLLEALRT
PSESCQYDPETGARRNCGGGNIGGHSSVVVHYHQSHSGSGPATVGDRLHR
GGGGDPGGDAKVTDPKFSDSGMWRAPRGNRSARLKEVLDCVAPPHTVRIE
CEIILHESLSRAGDRREGNGGTSGGGGSGTWDDFVFAWECLGDGILAGRA
LSGYWEHAHQDGSDHTPTNGRLQRAADDLLSDGLMRALLSTRCYRPPGRD
QLFVEWLDELLEVVRTHVRRACLRVPVQHGLTAGLEWFQEWKVDYHQIQG
*

mRNA from alignment at chr_27:4855739..4861024+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-27_005380.1 ID=Ec-27_005380.1|Name=Ec-27_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5286bp|location=Sequence derived from alignment at chr_27:4855739..4861024+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGATGGGGTGTGCACTCTGGTATTGGCGACGACGAGAATGGAGCAGA
CGACGAGTGTCTCCCCACTCTCCGGACGCATTCCCTCGACGGCGTCGTGG
TCCCCGACTCTGTTTTGAAGGAGTGGAGGCGACGCAAGGGGCTTGGAGCG
CCGGCAGAGCAAGCAGTGCAGCAGTCGGCAGTAGCGAAGGGGGGAGGCAC
AGAGGTGGCGATAGGCGGACGTTTTAGCTCTCCTGCTTCTCCACGACCTG
GTGCGACGTTGAGCCGCTGCCTGCGGCGAATCAAGAAGATGGCGCCGTTA
GATGAGCGGGGCATGTGGCTTCTAAACAACCTCCTTTCGCAGGTAGATAT
TGAAAAGTGTAATCTGGACAGAGACACATTGTATTTGCGGCAGTATAAGT
ATGAAGGCTTGAAGGATACTATGAATAACTGCTGCTGTACGTAGGAGGTC
ATCGTGGGCATGACGGACCTCTTTGTTCTACAGCAGTATGTATGTAGAAG
AACGTACACGCTCACTTTGAATTTGGAAAACTATTTGTTCCTACACGTAC
GTAAATCTTCTCGCGGTAAAATTCGAAGGCAAGCACCGCAGAAGGGGCCC
CAGGGGAAGGGGCCCTCCTGTGTGACCAAGGGTTGGAGGTCGTACCCGGC
GGAAATGCTGCGAGCGCTTGGGAAAGAATAAATGTGCTCAGATAGTTGGT
CCATGGACAAAGGCAAAGCAGTCCGCGAAGGTATCACGTCCGCTGAGCTT
TGTTACAACTGTACAGGTATTTTGTTGACGTACATCCCGCAACAACGCGA
TAGTGGAGTTTTTAGGCGAAGAGTGCCAAAACATGTGAACCATTTTTTGT
TACGACGCAAAGGGAAGCCATTATATGCATGAAGTCACAGCAAACAGGCC
AGGGCATAGCAGAGAAGGACCGTACGCTGTGTGACGTTGTCATCCTTTAT
TTGCCCATGTCGAACCTCAGATCTATTGTTTTCCGTTGCGCACGTTGAGC
GTACATGTGGTGAGCGGTAGGTGGGGCAATCATGTTTCGAAAGGCACTGA
CGGGGAAAAAATATGTGATACTTCGCTCCAAGGTCTTTGAACTGTACAAA
TGATTCGGCGCCGTCGGACACGAAATAACGGAGCAAAGGTGTGGTAACTA
CTTGCAGAGAAGGAGACGTACAGATTCCCCGCGCAGGAGAGTATCCGGGT
TCCACACAAGAAAACATGAGGGCATTTTCTAAAGGATTTTTTTGTGTTGC
CTGAAGATGATTGATGGTGATGCCGTTGTTGTACCACTACACCACTACGC
GTAGAGTGCTCCTTTCATGCTCGATATGTCTTGACTTTCTCATATTTTCT
GCGCATGGAAACATGGAAATGACTAACGCATAACAGACAAGAGTGGAGGA
CCAGGAAGAACTTTGTTGGTCTGTCCAAGACAAGTTGAGCAAGCGAAAGG
GGGCCCTCATCCGATCGAAGGATCGTCTCAAGCTGGAGTGCGACCGAAGG
TGCGCCGCGTGTGGCGATTGACGCGCTCTCAACCGTGTCTAGAGTCATCA
ATTACACGGAGGGAAGACACACACGAGGGACTAAGAGTGGAAACGCTCAT
CCTAAGGGGGAGCTACGTTTGGAGAGCAGGAGCGAGATGAGAACATGTGT
AGCTAGATATCGACCGCGAGCTGAATATGATGGATAGAGATGGCGGGAAG
GTCCGCCGTGTACCTCCCTGTTTCCCTTGTAGCTGGAGCCCCTTTGTCGA
TGTGAGAAATTTCCTGGTGTTGCTGTTTACTCTTTGTATTTCCGAGTTTT
TCCCTAGTTGATGTTACAAAACGTACAGGGTGTCCTTGTTCAGCAGTCGA
CCTTGTGACCATGGAAGGCGTCGGCGTTGATTGGATTAGAACGACAGGAA
ACGTTGGCATACAAGGACACCCAAGCCTGGTGAAGGTTTGTTGTTGCTGT
GCGAATGAAGCCCACCTAGTCATTGAAAATGGTTACAACGTGTTTTCACA
CAAGAACCCTTTGGAGAAGAGGCGAGCGGATGTTTCGGATCATACCTGTC
ACAGCATGTGTACCAGTGTGCAGTGTGTTGTTCCGATATTGAGCCTGTGC
ACTCGCGCGAAGCACAATTCAGATGTGCTTCGCGACGAAGATATCTTTAG
TATTCTCCACGTGCTGTTTCTAGTCAAATCCGGTTTCGCTCCCCCTCCCA
CCCACCCCGTCTACCGGCCTCCTCTCCCTCATCTCTCTGTCTCTATCTCG
CCCGTCATTCACGCCTTTCATGACCCTCTCCTGGACGACCGGGAATAACC
CCTCGAAGATGCGTGTTCACCAGAGCCACGAACGAGGTCCGCACCACCAG
CGCCATGACGGCGCAGGCCAACCGGTGCAACATACTGGCGACCGTCGTCA
AGGAACATCAAAATGCCAGGCGTTCCAACGACCAAAGTCGCCGACACAGG
CAGCCCCCTGACAACACAAACTCCGCTGCAAATACGGCCCCTCTTGCGCC
CCCCTCTACCACCGCGGACCGCCGTAAGGAGAAGGGTGCACTGCGGGGAA
AGGAGGTTGCAAAGGAAAAAGAAGTGGCCAGGGAAATAATTAGTTTGAAC
GAAAAGGAGGGCTCAAATGACAGAAGAGTTTCAAAGGCAGAAGGTAGAGG
GTCCCCACCCGAATACCCGTCATCCATCCTTCTGTCAATCAACATGGCGA
AGATGCGATCATCGGGGGAAATGGTAGCAGCCGGCGGCGATGCCACTTTA
CCTCGCAGAGCCGGAAGAACACGTCCCAATAGGACGCGGAACGCACCGTT
TGCTCGCCACGGTGGCCTCCTACAGGTCGCTGCATCCGAGGAGTGTGTCG
TCCCACCAGCCTCCTCTAGTCTTCACGGGCGGGATGTGCCAGCACTAGCC
GAGGGTGCCCCTGTGGCTGTTGGCAAGACCAGGGGGGGGCGCTACCAGAA
GAAAAAGCCGATGGGGCGGGTGGGACGCCTCGGGCTGCCTTCGATATCGG
AGCGATATGGTACAAGCGTGATGGAAAATTGGGTACAGTCGCCCGTCGCG
CTGAAACTCGAGCGGCCACGATGTAAGAGCGTGGCCATCGCACATCTCGA
TCAGCCGGCGTATAGGGAATACATGGAGGCGGTCATACGAGTGAGAGCAG
CTCAGACCCGACGACGGTGGCAACAATCGACGCGGGATGATACAGATGGC
GTGGGACAGGGGGTAACAGGCTGCTGGAAAGGGACCACCAACGATTGTGG
CATCATTTTGACGACTCAGCAGGAGGGAAAGACGACGCTAGGTTGTTCCT
CCCACCTTTGTCATGTCGAGCCCCGGGCTTTCAACAGCCAAAACCCACCT
AAGATTTCGCTACCTACTTCGTGTTCCAATCTTGGAGGAGGAGGAAAGGG
AATGTTTGGTCGCACGAGCTGCGAAATAGAGAAACGCCTACACCACGGAG
AAGACGATGAGCGTGGAGAATTCGGCAGAGCGCGTCTGAGAACACTGACC
AAAACCACCAGCCATGCCCCCGGGCACGGCAGTGACATCAGCAAAATAGC
CACCGCCGACGAGATTCTCACTTCGGAGGGGCTAGGGCTTCGCTCCAAAG
GTGCCCGCAAGGTTTTCAAGCAGACTCAGCGGCTGCTCGAGGCCTTGCGC
ACGCCAAGTGAAAGCTGCCAGTACGACCCCGAGACCGGGGCTCGCCGAAA
CTGCGGGGGTGGCAACATTGGAGGACACTCGAGCGTTGTCGTCCACTACC
ACCAAAGCCACTCGGGGAGCGGGCCTGCGACTGTAGGGGATAGGCTCCAT
CGCGGTGGTGGCGGTGACCCCGGTGGCGACGCGAAAGTCACCGATCCCAA
GTTCAGCGATAGTGGAATGTGGCGAGCACCTCGAGGGAACAGGTCGGCGC
GTCTTAAGGAGGTTCTTGACTGCGTGGCCCCCCCGCACACCGTGCGCATT
GAGTGCGAGATCATCTTGCATGAATCGCTAAGCCGCGCTGGCGACAGGCG
TGAAGGCAACGGAGGGACAAGCGGCGGTGGTGGCAGCGGCACATGGGACG
ACTTTGTGTTTGCGTGGGAGGTGAGGAAGCAGAACGAGTTTCACCAGGCG
TATGCGCTAGAGTGTACCTGCAGTTTTCCGGGGAATGATGACGCAGGGGT
ATTCGCCGCATGCCAATTGCTTCAAAAGTGATCGACCAACATCCGTAGGG
TTCGACTCCATACCTATCCCTACCAGATGTTGTGCCAAGTGGGAAACTGC
TTCTTCCCGAAAACAATCAGAACCTTTGTACAGGCGCATCTTGAGGGCAT
TTCAAGTCGTGGAAGGGCCAATACATAGCCAATGTCTAGTTGCACACGTA
CTGTGCTATGCCTTTCGCCCCTCGTCTCTTTTCTCCTCGATGATAGTGCT
TGGGTGACGGGATCTTGGCTGGGAGAGCGCTGAGTGGGTACTGGGAACAT
GCCCACCAGGACGGTAGCGACCATACCCCTACCAACGGGAGGTTGCAACG
GGCCGCAGATGACCTTCTGTCCGACGGATTGATGCGCGCGTTGCTTTCTA
CGAGGTGCTACCGGCCGCCGGGGCGGGACCAGCTTTTCGTGGAGGTGCGA
CATGGATACCGTCACAACCGTTCCGCGTAGCAAAGCCGCATTTTTCGAGT
GCGGCAAGTCACGTTGTTAGAAGCACACCTCAAGGGTGCTCTGAGGCATT
TCGAGCGCGTTCGGATGTATCCTAACGTTCGAGTCGAAAGGTTTCCTACT
TCATGCCTCTGGCGAGCGCTTCCCTCACATCACCCGGCGTGGACATCGTC
AATGGTCGTCTGTTCGTCCCAGCACTAAGCTTCAATGCAAGTGCTATTGT
ACCTATCTATGTTCCCATCTGGCGTCCTTGATTGGGAACGGAATGTCTAC
GCCTTAGCAGTACTTGTGCGAGAGAACAGTCGAAACGAAACGACATGTGG
CGGTTGTCATGTGTGATGGATTGCATACACGTAGAACTCCTGCATCGATG
CCAGTAACTGCCGACTCTATGTACTGCCCTTTGTCCCCGTCTTCCGCGCT
GAAGTGGTTGGATGAGCTCTTGGAAGTCGTCAGAACTCATGTTCGGCGAG
CCTGTTTGAGGGTCCCCGTGCAACATGGCTTGACGGCGGGGTTGGAGTGG
TTTCAAGAGGTAGGTTGGTTCTTGTTGGTGGCGACGTCTTTGTTGCTTCT
GTTGCCTTCGCGGTCGCCTCTGTGCCACGCTGGCCATTTTCATCTTTGTT
CAGTGGAAGGTAGACTATCATCAAATTCAAGGTTGA

Coding sequence (CDS) from alignment at chr_27:4855739..4861024+

>Ec-27_005380.1 ID=Ec-27_005380.1|Name=Ec-27_005380.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=2553bp|location=Sequence derived from alignment at chr_27:4855739..4861024+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGATGGGGTGTGCACTCTGGTATTGGCGACGACGAGAATGGAGCAGA
CGACGAGTGTCTCCCCACTCTCCGGACGCATTCCCTCGACGGCGTCGTGG
TCCCCGACTCTGTTTTGAAGGAGTGGAGGCGACGCAAGGGGCTTGGAGCG
CCGGCAGAGCAAGCAGTGCAGCAGTCGGCAGTAGCGAAGGGGGGAGGCAC
AGAGGTGGCGATAGGCGGACGTTTTAGCTCTCCTGCTTCTCCACGACCTG
GTGCGACGTTGAGCCGCTGCCTGCGGCGAATCAAGAAGATGGCGCCGTTA
GATGAGCGGGGCATGTGGCTTCTAAACAACCTCCTTTCGCAGACAAGAGT
GGAGGACCAGGAAGAACTTTGTTGGTCTGTCCAAGACAAGTTGAGCAAGC
GAAAGGGGGCCCTCATCCGATCGAAGGATCGTCTCAAGCTGGAGTGCGAC
CGAAGATGCGTGTTCACCAGAGCCACGAACGAGGTCCGCACCACCAGCGC
CATGACGGCGCAGGCCAACCGGTGCAACATACTGGCGACCGTCGTCAAGG
AACATCAAAATGCCAGGCGTTCCAACGACCAAAGTCGCCGACACAGGCAG
CCCCCTGACAACACAAACTCCGCTGCAAATACGGCCCCTCTTGCGCCCCC
CTCTACCACCGCGGACCGCCGTAAGGAGAAGGGTGCACTGCGGGGAAAGG
AGGTTGCAAAGGAAAAAGAAGTGGCCAGGGAAATAATTAGTTTGAACGAA
AAGGAGGGCTCAAATGACAGAAGAGTTTCAAAGGCAGAAGGTAGAGGGTC
CCCACCCGAATACCCGTCATCCATCCTTCTGTCAATCAACATGGCGAAGA
TGCGATCATCGGGGGAAATGGTAGCAGCCGGCGGCGATGCCACTTTACCT
CGCAGAGCCGGAAGAACACGTCCCAATAGGACGCGGAACGCACCGTTTGC
TCGCCACGGTGGCCTCCTACAGGTCGCTGCATCCGAGGAGTGTGTCGTCC
CACCAGCCTCCTCTAGTCTTCACGGGCGGGATGTGCCAGCACTAGCCGAG
GGTGCCCCTGTGGCTGTTGGCAAGACCAGGGGGGGGCGCTACCAGAAGAA
AAAGCCGATGGGGCGGGTGGGACGCCTCGGGCTGCCTTCGATATCGGAGC
GATATGGTACAAGCGTGATGGAAAATTGGGTACAGTCGCCCGTCGCGCTG
AAACTCGAGCGGCCACGATGTAAGAGCGTGGCCATCGCACATCTCGATCA
GCCGGCGTATAGGGAATACATGGAGGCGGTCATACGAGTGAGAGCAGCTC
AGACCCGACGACGGTGGCAACAATCGACGCGGGATGATACAGATGGCGTG
GGACAGGGGGTAACAGGCTGCTGGAAAGGGACCACCAACGATTGTGGCAT
CATTTTGACGACTCAGCAGGAGGGAAAGACGACGCTAGGTTGTTCCTCCC
ACCTTTGTCATGTCGAGCCCCGGGCTTTCAACAGCCAAAACCCACCTAAG
ATTTCGCTACCTACTTCGTGTTCCAATCTTGGAGGAGGAGGAAAGGGAAT
GTTTGGTCGCACGAGCTGCGAAATAGAGAAACGCCTACACCACGGAGAAG
ACGATGAGCGTGGAGAATTCGGCAGAGCGCGTCTGAGAACACTGACCAAA
ACCACCAGCCATGCCCCCGGGCACGGCAGTGACATCAGCAAAATAGCCAC
CGCCGACGAGATTCTCACTTCGGAGGGGCTAGGGCTTCGCTCCAAAGGTG
CCCGCAAGGTTTTCAAGCAGACTCAGCGGCTGCTCGAGGCCTTGCGCACG
CCAAGTGAAAGCTGCCAGTACGACCCCGAGACCGGGGCTCGCCGAAACTG
CGGGGGTGGCAACATTGGAGGACACTCGAGCGTTGTCGTCCACTACCACC
AAAGCCACTCGGGGAGCGGGCCTGCGACTGTAGGGGATAGGCTCCATCGC
GGTGGTGGCGGTGACCCCGGTGGCGACGCGAAAGTCACCGATCCCAAGTT
CAGCGATAGTGGAATGTGGCGAGCACCTCGAGGGAACAGGTCGGCGCGTC
TTAAGGAGGTTCTTGACTGCGTGGCCCCCCCGCACACCGTGCGCATTGAG
TGCGAGATCATCTTGCATGAATCGCTAAGCCGCGCTGGCGACAGGCGTGA
AGGCAACGGAGGGACAAGCGGCGGTGGTGGCAGCGGCACATGGGACGACT
TTGTGTTTGCGTGGGAGTGCTTGGGTGACGGGATCTTGGCTGGGAGAGCG
CTGAGTGGGTACTGGGAACATGCCCACCAGGACGGTAGCGACCATACCCC
TACCAACGGGAGGTTGCAACGGGCCGCAGATGACCTTCTGTCCGACGGAT
TGATGCGCGCGTTGCTTTCTACGAGGTGCTACCGGCCGCCGGGGCGGGAC
CAGCTTTTCGTGGAGTGGTTGGATGAGCTCTTGGAAGTCGTCAGAACTCA
TGTTCGGCGAGCCTGTTTGAGGGTCCCCGTGCAACATGGCTTGACGGCGG
GGTTGGAGTGGTTTCAAGAGTGGAAGGTAGACTATCATCAAATTCAAGGT
TGA

Synonyms

The feature 'Ec-27_005380.1' has the following synonyms


Synonym
Esi0000_0220
Esi_0000_0220