Ec-27_005220.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005220.2
Unique NameEc-27_005220.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length240
Homology
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BLAST of Ec-27_005220.2 vs. uniprot
Match: D8LB50_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB50_ECTSI)

HSP 1 Score: 505 bits (1300), Expect = 6.670e-167
Identity = 282/398 (70.85%), Postives = 293/398 (73.62%), Query Frame = 2 
Query:  644 FRGRVLSVVERGVCCTNRKAVLVHHPGAGSVVKVVHAYGWHFVCFHVLLCLALLSHVAAT*RTPGSF-RGEAIC*VVLKSEVRGVGAATAKRTNRRGWTITDYFTINSP*RCRKCNGDEAYRESKHGDSNLHGAPLPTVRGMRGQMDHHCAFVANCV--------------GAGNHKQMLLFLVYSAACAVHAAFLFCRLCNAFLMAVLLVGIFSWLVCLISSQVHGIRVHAGTVDRMQAAAPGYRAAGQAGALGAAPPDSRRQDGWPGLLPTRRECPPGHLPLPGDGRVTPVLDEDATSSTGQELTQGARRPASASSGGFEVAVSLPRATPGAVAGDAASGGLGLRFRVIRGLWETVHQEILGEGAWVLWFVPTPARLSPELEQRVYAPHGKAGRAQ 1792
            +RG   + +ER   CT         P  GSVVKVVHAYGWHFVCFHVLLCLALLSHVAAT   PG F RG  +   + +++ RG G                          R C+  EAY+  +                      HHC                     GAGNHKQMLLFLVYSAACAVHAAFLFCRLCNAFLMAVLLVGIFSWLVCLISSQVHGIRVHAGTVDRMQAAAPGYRAAGQAGALGAAPPDSRRQDGWPGLLPTRRECPPGHLPLPGDGRVTPVLDEDATSSTGQELTQGARRPASASSGGFEVAVSLPRATPGAVAGDAASGGLGLRFRVIRGLWETVHQEILGEGAWVLWFVPTPARLSPELEQRVYAPHGKAGRAQ
Sbjct:  131 WRGGCAAPIERPSWCTI--------PALGSVVKVVHAYGWHFVCFHVLLCLALLSHVAATVTDPGFFSRGSHL---LGRAQERGSG--------------------------RWCSHCEAYKPPRA---------------------HHCRXXXXXXXXXXXXXXXXXXXXGAGNHKQMLLFLVYSAACAVHAAFLFCRLCNAFLMAVLLVGIFSWLVCLISSQVHGIRVHAGTVDRMQAAAPGYRAAGQAGALGAAPPDSRRQDGWPGLLPTRRECPPGHLPLPGDGRVTPVLDEDATSSTGQELTQGARRPASASSGGFEVAVSLPRATPGAVAGDAASGGLGLRFRVIRGLWETVHQEILGEGAWVLWFVPTPARLSPELEQRVYAPHGKAGRAQ 470
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BLAST of Ec-27_005220.2 vs. uniprot
Match: D8LS10_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS10_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 8.450e-8
Identity = 49/147 (33.33%), Postives = 65/147 (44.22%), Query Frame = 2 
Query:  764 HFVCFHVLLCLALLSHVAAT*RTPGSFRGEAIC*VVLKSEVRGVGAATAKRTNRRGWTITDYFTINSP*RCRKCNGDEAYRESKHGDSNLHGAPLPTVRGMRGQMDHHCAFVANCVGAGNHKQMLLFLVYSAACAVHAAFL-FCRLC 1201
            H V F++L CLA  SH  A    PG+    A+      +EV   G   A    R        F  +S   CRKCN   AY+  +    ++        R    +MDHHC +V NCVG GNHK  + F+ Y    + +A  L  CR C
Sbjct:   58 HVVAFNLLACLAHASHARAMLTDPGAVSCHAL---PPAAEVEAAGGGGASGNGRD-------FAADSRRFCRKCN---AYKPVRAHHCSI-------CRRCVVKMDHHCPWVNNCVGIGNHKFFIQFISYVLVISAYALLLAVCRFC 184
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BLAST of Ec-27_005220.2 vs. uniprot
Match: D8LB51_ECTSI (SAP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB51_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.650e-7
Identity = 35/36 (97.22%), Postives = 36/36 (100.00%), Query Frame = -1 
Query: 2740 QVTDLKVELKGRGLRVSGNKAELLARLEEALQQPAA 2847
            +VTDLKVELKGRGLRVSGNKAELLARLEEALQQPAA
Sbjct:  880 KVTDLKVELKGRGLRVSGNKAELLARLEEALQQPAA 915
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BLAST of Ec-27_005220.2 vs. uniprot
Match: A0A6H5KL58_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL58_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.540e-7
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = -1 
Query: 2740 QVTDLKVELKGRGLRVSGNKAELLARLEEALQQPAA 2847
            +VTDLKVELKGRGLRVSGNKAELLARLE+ALQQPAA
Sbjct:  739 KVTDLKVELKGRGLRVSGNKAELLARLEKALQQPAA 774
[Close]
BLAST of Ec-27_005220.2 vs. uniprot
Match: A0A7S3PAG9_9STRA (Palmitoyltransferase n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PAG9_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.920e-5
Identity = 44/152 (28.95%), Postives = 69/152 (45.39%), Query Frame = 2 
Query:  725 AGSVVKVVHAYGWHFVCFHVLLCLALLSHVAAT*RTPGSFRGEAIC*VVLKSEVRGVGAA-TAKRTNRRGWTITDYFTINSP*RCRKCNGDEAYRESKHGDSNLHGAPLPTVRGMRGQMDHHCAFVANCVGAGNHKQMLLFLVYSAACAVHA 1177
            +GSV    +   +H V F  ++ LA+LSH+ A    PG+          +  + R +  + T +  N++ + +           C KCN  +  R         H   +   R    +MDHHC +V NCVG GNHK  LLFL+Y    +++A
Sbjct:   65 SGSVSIGYNKGTFHAVAFSTIVALAILSHLKAMTTDPGA----------VPRDARPLDHSDTLENANKKNYRM-----------CLKCNSFKPGR--------THHCSI--CRRCVVKMDHHCPWVNNCVGLGNHKFFLLFLMYVFTASIYA 185
The following BLAST results are available for this feature:
BLAST of Ec-27_005220.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LB50_ECTSI6.670e-16770.85Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
D8LS10_ECTSI8.450e-833.33Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
D8LB51_ECTSI1.650e-797.22SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KL58_9PHAE4.540e-794.44SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3PAG9_9STRA5.920e-528.95Palmitoyltransferase n=1 Tax=Aplanochytrium stocch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:4717107..4721450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.1
Seed ortholog evalue3.3e-124
Seed eggNOG ortholog2880.D8LB50
Length2889
Hectar predicted targeting categorysignal anchor
Gene idEc-27_005220.2
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005220Ec-27_005220Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 4717107..4721450 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005220.2Ec-27_005220.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 4718196..4718915 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005220.2.5Ec-27_005220.2.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4717107..4718955 -
Ec-27_005220.2.4Ec-27_005220.2.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4719150..4719364 -
Ec-27_005220.2.3Ec-27_005220.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4719975..4720069 -
Ec-27_005220.2.2Ec-27_005220.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4720523..4720617 -
Ec-27_005220.2.1Ec-27_005220.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 4720816..4721450 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0052203UTR:Ec-27_005220.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_27 4717107..4718195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005220.2CDS:Ec-27_005220.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 4718196..4718915 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_0052205UTR:Ec-27_005220.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_27 4718916..4718955 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005220.2 ID=Ec-27_005220.2|Name=Ec-27_005220.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=240bp
MDHHCAFVANCVGAGNHKQMLLFLVYSAACAVHAAFLFCRLCNAFLMAVL
LVGIFSWLVCLISSQVHGIRVHAGTVDRMQAAAPGYRAAGQAGALGAAPP
DSRRQDGWPGLLPTRRECPPGHLPLPGDGRVTPVLDEDATSSTGQELTQG
ARRPASASSGGFEVAVSLPRATPGAVAGDAASGGLGLRFRVIRGLWETVH
QEILGEGAWVLWFVPTPARLSPELEQRVYAPHGKAGRAQ*
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spliced messenger RNA

>Ec-27_005220.2 ID=Ec-27_005220.2|Name=Ec-27_005220.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2889bp|location=Sequence derived from alignment at chr_27:4717107..4721450- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CATTGCGGTACTAGAGTGCGGCACGTGCGGGACGGCGAGAGACGGAACTC
ACTTTTTGGCTCATTCAGTAGTGTCGTCTGTCGCAGTTTGAACCGTTGAA
TACAAGCCAAGCAGCAAGTGAGAGAGCCAGTGCCAGTCCGTTCCCTCGAG
CCGATCGGCGCCTCCACACCAAGTCCCACCCTCTTGGCTTGCTGCACTAC
AGTACTCATATTCTGAAGCTTACAGGTGGATCAAGACGTCAACGGCAACC
ATCGGGCTTACCCGAAACCCGTCGCTTGAATGTCCGCTGCGGCCATGAAC
CGTGAGGTAGGCGGCTTGAGATCGTCCTCATCACTGCTCGCCCTTGTCAC
CGCTACAAGCCCGACTTCGCATCTGTCGCCCCATCCTCTGCGAGGGCCAG
TGCCAGCGAAGAGTGAAAATAGGACTGCGTGCAACTTTGAACTTTTTTCC
CGTGCCACCGGCTCCCTGGTGGAAGCGAACGGCAGCGGCCACCCCAGTTG
CAGCTCACGGTCAGTAGCATCAGGACTTCGCGCCGCGCAAGCTGTGACAG
GAGGCTGTGCGAGAGCAAAGAGAAGGGGCCGTCATCGCCCAGCGAAAAGG
CGACTGGCGAGCTTCGTTGCGCCGGCGCTCGTGTGGATCTTCGCTTTAGA
GGCCGAGTACTTTCTGTGGTGGAGAGGGGGGTGTGCTGCACCAATAGAAA
GGCCGTCTTGGTGCACCATCCCGGCGCTGGGTAGCGTCGTCAAGGTTGTT
CACGCTTACGGCTGGCATTTTGTTTGCTTTCACGTTCTCCTTTGCCTGGC
GCTACTTTCCCACGTCGCTGCCACGGTAACGGACCCCGGGTTCTTTTCGC
GGGGAAGCCATCTGCTAGGTCGTGCTCAAGAGCGAGGTTCGGGGCGTTGG
TGCAGCCACTGCGAAGCGTACAAACCGCCGAGGTTGGACAATCACGGACT
ACTTCACCATCAATAGTCCATAGCGGTGTCGCAAATGCAATGGAGATGAA
GCCTACAGAGAGAGCAAACATGGGGACAGCAACCTACACGGGCGCACCAC
TGCCGACGGTGCGGGGCATGCGTGGCCAGGATGGACCACCACTGCGCTTT
CGTGGCAAACTGTGTCGGGGCGGGCAACCACAAGCAGATGCTCCTCTTCC
TGGTGTACTCGGCCGCCTGCGCGGTACACGCGGCCTTTTTGTTTTGCCGC
CTGTGCAATGCCTTCTTGATGGCCGTCCTGCTAGTCGGCATCTTTAGCTG
GCTTGTTTGTCTAATTAGTTCGCAGGTGCACGGAATCCGTGTTCATGCCG
GCACCGTCGATCGGATGCAGGCTGCCGCGCCGGGGTATCGCGCGGCAGGA
CAGGCGGGGGCGCTGGGTGCTGCTCCGCCGGATTCCCGGCGGCAAGACGG
TTGGCCTGGGTTGCTGCCAACGCGAAGAGAGTGTCCTCCTGGCCATTTAC
CTCTCCCTGGCGATGGCCGCGTTACCCCTGTGCTAGACGAGGATGCTACG
TCGAGTACGGGACAAGAATTGACACAAGGAGCGCGGCGTCCTGCTTCTGC
CTCTAGCGGTGGCTTTGAGGTAGCCGTGAGCTTGCCGCGTGCTACTCCTG
GCGCAGTAGCTGGTGACGCCGCAAGTGGAGGGCTGGGACTCAGATTCCGT
GTTATTCGGGGTTTGTGGGAAACTGTGCACCAGGAGATACTGGGCGAGGG
GGCGTGGGTTTTGTGGTTTGTGCCGACACCAGCGAGACTGTCCCCCGAAT
TAGAGCAACGTGTCTACGCGCCACATGGAAAAGCGGGGAGAGCGCAATAA
CCAACTAGCGCAGTTTATTGGACAACCGTCTGTTCGCGGTCTAATTTGAG
GGAAGAAGCGTGATGGTACCTTTCGTCCAGAGATCAGTCTGGAGATATGG
GCAAGAAAGAGAGCACAAGTGCGATGCGTGTGCACGCTGGGTGCACGCGG
ACAAGCCTTGTTCGGGTGTCATTCGTCAGCGCCTCCTACGAACATATCGT
CAATCGGACGCCGACGGCGTTTCCGAACAACATATGGTTTGATTCTATCC
AGTATGGGAGTCTCTTCCATGAATCACCGGTAGCCAGGTCTGTTGGACGT
GAGCTGGGCATTCGCTAAAAGAATCGGTGGACTGGCCGTGATATGTCAGC
TAATGAACGCTCCTGGTCGCAACCAATGCACCGCACGTACGTGCACGATG
GTTCAAAACGAGTGTGGGGTTCGGGGTCGGCACTGCTGCGCGTGTTGCAG
GGAAGGTGGCTATTGAATACTTGCTGCGCGCCACGCAAGCGCCAGGAAAA
CAAACGGGAAACAAAACGGCCAGGGACGAAAAAGGAGTTGAAGGGATGAA
CAAACTGCAACCGCCCGGACATATTTCGAAGGAGCCAGTCCGCCGTACGT
TTTTTTACCCACGGAAGGCCGAACGTTGCGACCCTTTCGAAACAGGTGCC
TGAACCAGCACCGGACATGTTCATGCATAGTCTCGAAGATCATTTTGATA
ACAACCCATGATGCAATCGTCGATAAGACCCGATTTGCGGCCAGCAGTTC
GCCACGAGCAACCCCTATAAAATTGGGGACATGACTCTCATCCCCGAGAT
CTCAGGCAAACCAAGGCCCACAAACGCAGACCAAGCGCAAGTTCTACGCG
TGCTCCGAGTCACTTTTCGTGCACAGCGTGGCTTTATATAATCGGACACG
AACGACCGGCTTCTTGGCCGGCAAGGTATCCAGCCTTGACGCTAGGCTGC
TGGCTGCTGCAGAGCCTCCTCGAGCCTGGCGAGAAGCTCGGCTTTGTTAC
CAGACACACGGAGCCCCCTGCCCTTGAGCTCGACCTTGAGGTCGGTAACC
TGGCGTTTCGAGAGGAAAATAAACGGCATTTGTTTTCGG
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protein sequence of Ec-27_005220.2

>Ec-27_005220.2 ID=Ec-27_005220.2|Name=Ec-27_005220.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=240bp
MDHHCAFVANCVGAGNHKQMLLFLVYSAACAVHAAFLFCRLCNAFLMAVL
LVGIFSWLVCLISSQVHGIRVHAGTVDRMQAAAPGYRAAGQAGALGAAPP
DSRRQDGWPGLLPTRRECPPGHLPLPGDGRVTPVLDEDATSSTGQELTQG
ARRPASASSGGFEVAVSLPRATPGAVAGDAASGGLGLRFRVIRGLWETVH
QEILGEGAWVLWFVPTPARLSPELEQRVYAPHGKAGRAQ*
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mRNA from alignment at chr_27:4717107..4721450-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005220.2 ID=Ec-27_005220.2|Name=Ec-27_005220.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4344bp|location=Sequence derived from alignment at chr_27:4717107..4721450- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CATTGCGGTACTAGAGTGCGGCACGTGCGGGACGGCGAGAGACGGAACTC
ACTTTTTGGCTCATTCAGTAGTGTCGTCTGTCGCAGTTTGAACCGTTGAA
TACAAGCCAAGCAGCAAGTGAGAGAGCCAGTGCCAGTCCGTTCCCTCGAG
CCGATCGGCGCCTCCACACCAAGTCCCACCCTCTTGGCTTGCTGCACTAC
AGTACTCATATTCTGAAGCTTACAGGTGGATCAAGACGTCAACGGCAACC
ATCGGGCTTACCCGAAACCCGTCGCTTGAATGTCCGCTGCGGCCATGAAC
CGTGAGGTAGGCGGCTTGAGATCGTCCTCATCACTGCTCGCCCTTGTCAC
CGCTACAAGCCCGACTTCGCATCTGTCGCCCCATCCTCTGCGAGGGCCAG
TGCCAGCGAAGAGTGAAAATAGGACTGCGTGCAACTTTGAACTTTTTTCC
CGTGCCACCGGCTCCCTGGTGGAAGCGAACGGCAGCGGCCACCCCAGTTG
CAGCTCACGGTCAGTAGCATCAGGACTTCGCGCCGCGCAAGCTGTGACAG
GAGGCTGTGCGAGAGCAAAGAGAAGGGGCCGTCATCGCCCAGCGAAAAGG
CGACTGGCGAGCTTCGTTGCGCCGGCGCTCGTGTGGTGCGTACTTCCTCT
CTAATTATGTTTCTACAGGGTTTCACTGAAGGCTCGGGTTGATTCTTGCG
TTCAGGCGCCCTGCTCTGTCTTGTTCTATTTCAATCGATCAATGCTTACA
AGCCCCACTTCCATGTATCCTCTGCTCTTGTTGTTCTTCGTATGGTCCAC
GGCCCCCGTTTTGACGGTATGCTCTTCACCAAGGATCTTCGCTTTAGAGG
CCGAGTACTTTCTGTGGTGGAGAGGGGGGTGTGCTGCACCAATAGAAAGG
CCGTCTTGGTGCACCATCCCGGCGCTGGGTGAGCTTTTTTCGGTGTATAT
TCGAATGATGATGGGTACAGCAGTAGTAGGTTTTTCACGGGTAGGCTGTG
TGTTCTCGTAATATGCCGCGACCTGTCTGTCTTTCCCTTCATCCCAGAAA
GAGGACATGCCTCTCAAAAAAATACGGAGTATTGACTTGGATTGGTATGG
ATTATTTGTTTTTTCACCTTTGGCAGACGGAGTATGGTTTGTTTGTTTAC
TTTCCTGGTTTTGACAGGGCGTAACGGCATCTTCCGAAAACGCGATGCAA
TGTACCAAACTTGATTTGCGAGTTGTTAATTGACGGGTGACCAAAATGAC
CCGTCTGTTCGACGTTCGGCTCGGCGCGCCACACCCGACCGCATGCCGTT
GATATTGCGAGCGTGCAATGAGCCCCCGCAACGAACTTTTGCTCATTCTT
TTCTCTGTTTTTTCCGCGTGAAATCAACCAGGTAGCGTCGTCAAGGTTGT
TCACGCTTACGGCTGGCATTTTGTTTGCTTTCACGTTCTCCTTTGCCTGG
CGCTACTTTCCCACGTCGCTGCCACGGTGAGAGACTTTTATTTTATTATT
TTCTTGGATTGATTGCCGTCGCGGACGGCGCAAGAGACGAAGTTCGTCGT
TTACCTACGTGCTTGTCTTTCCACTCTGTCCGTCGAAACTCCGATGCAAG
TTGCTTCTGTTACTGTAGCTGTACCATCTACACCCAGCTGGAACCTGCTC
CGTAGCACCAGCCATTTCTTGTGGGTTGATAGTCCTGAACATTTCACCTC
TGCGCGTTTGGCACACCCCGTACAACCGCACGAGACAATAAATAGCTTGT
GCCTAGAGCTGCGGACCATGACCGGCAACTTCGATTACAGTGTCACGTGC
TCCCTCCACCCCCCCCCATCGTACATAGTTTCGCTGTGAATGCAGATCTT
CGTACACACGGCGCAGTGTATTGCGGGTACTTCCACTAGGGTAGTTTTAT
TAGGTTCAGGTTTGTGATCGTGTTGAACACACAGATGTCGAAAACACCAT
CTCAAGGCGTGGAAGCAAGAGGGCAAAGGGGGTGTTTGACAGGCGTTGAA
ATCAGCAGTATTTCACTTACATGCCCAAATGCTATTATGCTGCTACCCAC
CCGCGACATGTCCCTGTCCGTTTTGCGTGTGCACAGGTAACGGACCCCGG
GTTCTTTTCGCGGGGAAGCCATCTGCTAGGTCGTGCTCAAGAGCGAGGTT
CGGGGCGTTGGTGCAGCCACTGCGAAGCGTACAAACCGCCGAGGTTGGAC
AATCACGGACTACTTCACCATCAATAGTCCATAGCGGTGTCGCAAATGCA
ATGGAGATGAAGCCTACAGAGAGAGCAAACATGGGGACAGCAACCTACAC
GGTGATACATGTAGACTATGTCATACTCGATGGTAGCACGGCAGTGTCCA
CGGATGTGCTGCACGATGTGGCGAGCACCCGGTCATCCGGATAAACATCC
AGACGTGTCCGACAACTGCTTTGGGAGATTTCTAACGATCCGCGCCTGTT
TTCCCAACCCCTCTTGTCGCCCCCACCTCCCAAAATCAACCAAAGGGCGC
ACCACTGCCGACGGTGCGGGGCATGCGTGGCCAGGATGGACCACCACTGC
GCTTTCGTGGCAAACTGTGTCGGGGCGGGCAACCACAAGCAGATGCTCCT
CTTCCTGGTGTACTCGGCCGCCTGCGCGGTACACGCGGCCTTTTTGTTTT
GCCGCCTGTGCAATGCCTTCTTGATGGCCGTCCTGCTAGTCGGCATCTTT
AGCTGGCTTGTTTGTCTAATTAGTTCGCAGGTGCACGGAATCCGTGTTCA
TGCCGGCACCGTCGATCGGATGCAGGCTGCCGCGCCGGGGTATCGCGCGG
CAGGACAGGCGGGGGCGCTGGGTGCTGCTCCGCCGGATTCCCGGCGGCAA
GACGGTTGGCCTGGGTTGCTGCCAACGCGAAGAGAGTGTCCTCCTGGCCA
TTTACCTCTCCCTGGCGATGGCCGCGTTACCCCTGTGCTAGACGAGGATG
CTACGTCGAGTACGGGACAAGAATTGACACAAGGAGCGCGGCGTCCTGCT
TCTGCCTCTAGCGGTGGCTTTGAGGTAGCCGTGAGCTTGCCGCGTGCTAC
TCCTGGCGCAGTAGCTGGTGACGCCGCAAGTGGAGGGCTGGGACTCAGAT
TCCGTGTTATTCGGGGTTTGTGGGAAACTGTGCACCAGGAGATACTGGGC
GAGGGGGCGTGGGTTTTGTGGTTTGTGCCGACACCAGCGAGACTGTCCCC
CGAATTAGAGCAACGTGTCTACGCGCCACATGGAAAAGCGGGGAGAGCGC
AATAACCAACTAGCGCAGTTTATTGGACAACCGTCTGTTCGCGGTCTAAT
TTGAGGGAAGAAGCGTGATGGTACCTTTCGTCCAGAGATCAGTCTGGAGA
TATGGGCAAGAAAGAGAGCACAAGTGCGATGCGTGTGCACGCTGGGTGCA
CGCGGACAAGCCTTGTTCGGGTGTCATTCGTCAGCGCCTCCTACGAACAT
ATCGTCAATCGGACGCCGACGGCGTTTCCGAACAACATATGGTTTGATTC
TATCCAGTATGGGAGTCTCTTCCATGAATCACCGGTAGCCAGGTCTGTTG
GACGTGAGCTGGGCATTCGCTAAAAGAATCGGTGGACTGGCCGTGATATG
TCAGCTAATGAACGCTCCTGGTCGCAACCAATGCACCGCACGTACGTGCA
CGATGGTTCAAAACGAGTGTGGGGTTCGGGGTCGGCACTGCTGCGCGTGT
TGCAGGGAAGGTGGCTATTGAATACTTGCTGCGCGCCACGCAAGCGCCAG
GAAAACAAACGGGAAACAAAACGGCCAGGGACGAAAAAGGAGTTGAAGGG
ATGAACAAACTGCAACCGCCCGGACATATTTCGAAGGAGCCAGTCCGCCG
TACGTTTTTTTACCCACGGAAGGCCGAACGTTGCGACCCTTTCGAAACAG
GTGCCTGAACCAGCACCGGACATGTTCATGCATAGTCTCGAAGATCATTT
TGATAACAACCCATGATGCAATCGTCGATAAGACCCGATTTGCGGCCAGC
AGTTCGCCACGAGCAACCCCTATAAAATTGGGGACATGACTCTCATCCCC
GAGATCTCAGGCAAACCAAGGCCCACAAACGCAGACCAAGCGCAAGTTCT
ACGCGTGCTCCGAGTCACTTTTCGTGCACAGCGTGGCTTTATATAATCGG
ACACGAACGACCGGCTTCTTGGCCGGCAAGGTATCCAGCCTTGACGCTAG
GCTGCTGGCTGCTGCAGAGCCTCCTCGAGCCTGGCGAGAAGCTCGGCTTT
GTTACCAGACACACGGAGCCCCCTGCCCTTGAGCTCGACCTTGAGGTCGG
TAACCTGGCGTTTCGAGAGGAAAATAAACGGCATTTGTTTTCGG
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Coding sequence (CDS) from alignment at chr_27:4717107..4721450-

>Ec-27_005220.2 ID=Ec-27_005220.2|Name=Ec-27_005220.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=720bp|location=Sequence derived from alignment at chr_27:4717107..4721450- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACCACCACTGCGCTTTCGTGGCAAACTGTGTCGGGGCGGGCAACCA
CAAGCAGATGCTCCTCTTCCTGGTGTACTCGGCCGCCTGCGCGGTACACG
CGGCCTTTTTGTTTTGCCGCCTGTGCAATGCCTTCTTGATGGCCGTCCTG
CTAGTCGGCATCTTTAGCTGGCTTGTTTGTCTAATTAGTTCGCAGGTGCA
CGGAATCCGTGTTCATGCCGGCACCGTCGATCGGATGCAGGCTGCCGCGC
CGGGGTATCGCGCGGCAGGACAGGCGGGGGCGCTGGGTGCTGCTCCGCCG
GATTCCCGGCGGCAAGACGGTTGGCCTGGGTTGCTGCCAACGCGAAGAGA
GTGTCCTCCTGGCCATTTACCTCTCCCTGGCGATGGCCGCGTTACCCCTG
TGCTAGACGAGGATGCTACGTCGAGTACGGGACAAGAATTGACACAAGGA
GCGCGGCGTCCTGCTTCTGCCTCTAGCGGTGGCTTTGAGGTAGCCGTGAG
CTTGCCGCGTGCTACTCCTGGCGCAGTAGCTGGTGACGCCGCAAGTGGAG
GGCTGGGACTCAGATTCCGTGTTATTCGGGGTTTGTGGGAAACTGTGCAC
CAGGAGATACTGGGCGAGGGGGCGTGGGTTTTGTGGTTTGTGCCGACACC
AGCGAGACTGTCCCCCGAATTAGAGCAACGTGTCTACGCGCCACATGGAA
AAGCGGGGAGAGCGCAATAA
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Synonyms
The feature 'Ec-27_005220.2' has the following synonyms
Synonym
Esi0000_0245
Esi_0000_0245