Ec-00_007980.4 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007980.4
Unique NameEc-00_007980.4
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length124
Homology
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BLAST of Ec-00_007980.4 vs. uniprot
Match: A0A6H5JHG7_9PHAE (ANAPC8 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHG7_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.250e-55
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 3 
Query:  645 MDIDTPRPGERDGASASASFATTSGPKMPPTAEIRRALLGAVEELSNHGLKLATKWATEQLVGLPDDEAPDDLRYAAEPNPATPQKQEGGANLRLQGRVAFAKSLMDVG 971
            MDIDTPRPGE +GASASASFATTSGPKMPPTAEIRRALLGAVEELSNHGLKLATKWATEQLVGLPDDE PDDLRYAAEP+PATPQK+EGGANL LQGRVAFAKSLMDVG
Sbjct:    1 MDIDTPRPGEGNGASASASFATTSGPKMPPTAEIRRALLGAVEELSNHGLKLATKWATEQLVGLPDDETPDDLRYAAEPDPATPQKREGGANLWLQGRVAFAKSLMDVG 109
The following BLAST results are available for this feature:
BLAST of Ec-00_007980.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHG7_9PHAE1.250e-5594.50ANAPC8 domain-containing protein n=3 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12956141..12959515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length1020
Hectar predicted targeting categoryother localisation
Gene idEc-00_007980.4
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007980Ec-00_007980Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12952107..12959515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007980.4Ec-00_007980.4Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12956143..12957733 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007980.4.5Ec-00_007980.4.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12956141..12956189 -
Ec-00_007980.4.4Ec-00_007980.4.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12956426..12956583 -
Ec-00_007980.4.3Ec-00_007980.4.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12957105..12957190 -
Ec-00_007980.4.2Ec-00_007980.4.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12957653..12957852 -
Ec-00_007980.4.1Ec-00_007980.4.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12958989..12959515 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0079803UTR:Ec-00_007980.4Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 12956141..12956142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007980.4CDS:Ec-00_007980.4Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12956143..12956189 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0079805UTR:Ec-00_007980.4Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 12957734..12957852 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007980.4 ID=Ec-00_007980.4|Name=Ec-00_007980.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=124bp
MDIDTPRPGERDGASASASFATTSGPKMPPTAEIRRALLGAVEELSNHGL
KLATKWATEQLVGLPDDEAPDDLRYAAEPNPATPQKQEGGANLRLQGRVA
FAKSLMDVGRGRAQLILRQYPAHT
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spliced messenger RNA

>Ec-00_007980.4 ID=Ec-00_007980.4|Name=Ec-00_007980.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1020bp|location=Sequence derived from alignment at chr_00:12956141..12959515- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CGCTTTGTACCCCCTGCAGCTTCTTCAGCTCAGCATCCACCTCCGGGCTC
CTTCCAGGCTGGGCCATCTCTCAGCGCTCCTAGTTTCTTCACTCCTCGCT
GCTGTGCTACTGGCTTGCCCGCAGCTGCAGCTGCTCCTGTCAACCCTGGT
GTGCCTGTTGGGTGATCCTGAAGGTTGCCTTACCCTGCCCCTTCCCCGGT
CTCGAGACTATGCCAACGAACGCCAACTTCGAAACAGCCGTTCGGTGGAG
GTATGGTTTGTGTGCTGGGTCGCGTGTGCACCCTGCGGTGGGTATGGCGT
TGGTGCACAGTTGGTGTGCCGATCGGATGATCGGATCAGTCCTTGCTGCT
TGAAAACGCGGCGGGATTGCTTGTGCTGGGGCGACGCCCTCACACGATAC
CCCTAATTTTGTGCAGGTTGAGGATGCCCCCATCAGACGCAGCTGCGTGC
GGTGCCAGCGCTTCGCTTTGCCTCACCGCAGGAAGGAACAGAGGTGCTAA
CTAGCAAGGAGCGGGAGGTTTGGGGAGTCGGTGTTCACCAACCCCTCTTT
TTGCTTTGGAAGACACGCTCGAGGTTTGTGGGAGACTTTGCTCCAGCCCG
TGCTCACTCTGGGGTGTCTCTTTTTGGTCCGTTGACAGCGGTTGTCATGG
ACATCGACACGCCGCGCCCTGGGGAAAGGGACGGGGCCTCTGCATCGGCA
TCGTTCGCAACGACATCCGGGCCGAAGATGCCTCCAACCGCGGAGATACG
CAGGGCTCTGCTGGGCGCAGTGGAGGAGCTGTCCAACCACGGCCTCAAGC
TCGCCACGAAATGGGCTACTGAGCAGCTGGTCGGTCTGCCTGACGATGAG
GCGCCCGACGACTTGCGGTACGCGGCGGAACCAAACCCAGCCACCCCTCA
GAAGCAGGAAGGGGGGGCGAATCTGCGGCTTCAGGGCCGCGTAGCGTTTG
CGAAGTCCCTGATGGATGTCGGTCGAGGTCGTGCTCAACTCATTCTGCGG
CAATATCCGGCACACACCAG
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protein sequence of Ec-00_007980.4

>Ec-00_007980.4 ID=Ec-00_007980.4|Name=Ec-00_007980.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=124bp
MDIDTPRPGERDGASASASFATTSGPKMPPTAEIRRALLGAVEELSNHGL
KLATKWATEQLVGLPDDEAPDDLRYAAEPNPATPQKQEGGANLRLQGRVA
FAKSLMDVGRGRAQLILRQYPAHT
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mRNA from alignment at chr_00:12956141..12959515-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007980.4 ID=Ec-00_007980.4|Name=Ec-00_007980.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3375bp|location=Sequence derived from alignment at chr_00:12956141..12959515- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CGCTTTGTACCCCCTGCAGCTTCTTCAGCTCAGCATCCACCTCCGGGCTC
CTTCCAGGCTGGGCCATCTCTCAGCGCTCCTAGTTTCTTCACTCCTCGCT
GCTGTGCTACTGGCTTGCCCGCAGCTGCAGCTGCTCCTGTCAACCCTGGT
GTGCCTGTTGGGTGATCCTGAAGGTTGCCTTACCCTGCCCCTTCCCCGGT
CTCGAGACTATGCCAACGAACGCCAACTTCGAAACAGCCGTTCGGTGGAG
GTATGGTTTGTGTGCTGGGTCGCGTGTGCACCCTGCGGTGGGTATGGCGT
TGGTGCACAGTTGGTGTGCCGATCGGATGATCGGATCAGTCCTTGCTGCT
TGAAAACGCGGCGGGATTGCTTGTGCTGGGGCGACGCCCTCACACGATAC
CCCTAATTTTGTGCAGGTTGAGGATGCCCCCATCAGACGCAGCTGCGTGC
GGTGCCAGCGCTTCGCTTTGCCTCACCGCAGGAAGGAACAGAGGTGCTAA
CTAGCAAGGAGCGGGAGGTTTGGGGAGGTGAGAGGATGAATAAATCACCG
CTGTATAGGAGTATCAAGAATTGATGTCTGTGGAGACTAGCAACGAACAC
ATCTTGTGTACGAGATCATCGTTAGCGTAATTTTTGAATTGGGATGCAAG
GCTGACTGCCCTGATAAGGGCGCGTTCGGTTGCGAGTGTCGAGAGGCCCG
CTGCCAACAGTACTGCTGTAGTGCGTTGGCGACACACCTTGTTTTGGCGG
CTACTGCAGTAGAACCTTGACTTCGCGAAACTATGCAACAGCTTGTTCCC
GTCGGCAGTTTGCAGGAGCAGGAGCTACTGCTGTGCTGAGTGCGCTGACT
ACATGTAGATACAGCAAGTAAGCAATCCTTGCAGAGCTGCTGCTGCTAAA
AATAATATTCTCCTATAACTTGAGACATGAGCCTTCCCCGTAGTGAAGTA
CGCACACGCGGTGGTGTTTTTTCTGGAGCTATGCGCATACCATTTCTTAA
CACCACCACCGCGGTACGGCTCGGCTAACAGAAGAAGAAGAAGTGCTGCA
GGTTTCGGGAGGCCAAAATGCCACGAGAGCGTCTCGCGTTGCATGCCTTG
AGCTTTAGCTTTTGACAAATCGGTATCGGGGGTGTGGTATCTACTGCAAC
ATACAATACTAAAGGTCGGAGGTCGTCTCTCCTGTTTTCGTATTACAGCA
TACAAAGCCTTCGCTGTGTAATCTATGTAGGACCGACTCGCCGCCGCCGC
CGTTCCGTCGACGCGAAGGACGCGGATATGAGAGAAGATTGCTCGTCTAC
ACTTTGTTCGCGATATCTATACTCCTGTACCTTTACAGCGATGACCCTCG
AGTGTGTTCTCTGAAGGGTCTTTCGGCGCGTGTGTCCACGACCGAAACGG
GCACAACCCAACAGCATGTGGAGTTTCACCTCGGTATGTAGCTATCGCTC
CCATCAGGGCGGGTGGCGTTACCGGCTATTTTTTTGCAGCTACGCAACCA
ATACTTCAGCTTCCCTACAACTCCCAGATACCTTCTTCTGCCGTTGCTTG
GCCAATCGAAAGCTGTGTGCCCCTGAGCTCATGCAGGACATCGTGGGACA
GGGCGTCGACAACACCGATCGCATGTGCCTCGTCTCTGTTGTGGTGTCGT
ATCCTTGCCGCAGTCGGTGTTCACCAACCCCTCTTTTTGCTTTGGAAGAC
ACGCTCGAGGTTTGTGGGAGACTTTGCTCCAGCCCGTGCTCACTCTGGGG
TGTCTCTTTTTGGTCCGTTGACAGCGGTTGTCATGGACATCGACACGCCG
CGCCCTGGGGAAAGGGACGGGGCCTCTGCATCGGCATCGTTCGCAACGAC
ATCCGGGCCGAAGGTACTTCTGTTCTGTTGCTGATTTATCATTTGCTGTT
GCTGTCACCTTTGTTTGTGGCGCTATTATGTTGAGAGCGTTGGCTTTGTT
TCTTGTATACCTTCTCCACAAGCGGGAAACAACCCTTTTTCTTGTTATCC
ACTATTTTCGTTCGGACGCCCTTCGCTTTTTGCCAATCTTGACGCACGTC
GAACATGCTATCCCGAGGAGCGATGTGTTTGCTGTACACTACTGTAGTAG
CCGTCGTTGCAGGCGGAAACCCCACGAGATTTTGCTTGTGAGTACGGCCT
GAATGGCCAATCAATGCCAGTCCGGGTGTATTTGTGTGCTGACTGCTAAT
TCCTCGGTTTGTGATTGGGTCGGAGCTTATTGCCCGCCTCACCGCTTCCC
CTACCCATCTCACATGGCGGGGGAGCAACCGGTATCAGTCGACGATTCCA
TTCCCACCTTTCGTTGACTCTACAGATGCCTCCAACCGCGGAGATACGCA
GGGCTCTGCTGGGCGCAGTGGAGGAGCTGTCCAACCACGGCCTCAAGCTC
GCCACGAAATGGTGAGTTTTTGGCTGTGTTGTGTTGCAGTTTTGCAGTTT
TCAACTGCAATTGTACCGGTATGCGGAGTCATTCTTGATGGCGGCGGGGA
TGTTGTGATGTTGTGATGTTGTTGCGGCTGCTTCCGCGGTGTTGCTGTCT
TTTTTTATTTTGTTTACGCACGAATGCCCTGTTCCTTACGGACGGTGCGG
GTGTGCTAGTGGTGATTCACGTCTCGGTTGTTTGGGTGGCCATGCGTCAT
GTTGGACGTGTGCGTAACCAAAGCGGCGACGTTGTGTTTGAACATCTCGG
GTGTTTTTCCGCCCGCACAACATTGTCCTGGCTTGAAGTTAAATTCAGGG
CTATCTATCGTATGGGATAGTGGTACTGCTTGAGACCTGTCCCCCCTTTG
TTCTTCTGGTGTTCTCCATCCGCATTTATTTCTCCCACAACTTGATGTGC
CCTGTACTATACTCCAAGTTTTTCAACTTTTTTTATTTCTTTGTCTTGTA
TATACAACACCATGGTCTTGTTGCAAAATCAGGGCTACTGAGCAGCTGGT
CGGTCTGCCTGACGATGAGGCGCCCGACGACTTGCGGTACGCGGCGGAAC
CAAACCCAGCCACCCCTCAGAAGCAGGAAGGGGGGGCGAATCTGCGGCTT
CAGGGCCGCGTAGCGTTTGCGAAGTCCCTGATGGATGTCGGTGAGAAGGC
CAAGTGTGAAGGTTGATTGATTGATCGCTCTTGTGGTTGCCAACCAGTGT
TTTTTTTAAATGTAATCGAGTTTGCACCATCCTGTGCTATTTAGATCGCA
GCTATGCCCATGTTGCCCCAGTTCTTTCCCCCCTTTTCTTCGCCTTTTCC
TTGTTGGCACTGCTGTTTTCTTGCTTTTGGCCTTTTTTTGTGATGACATG
TACTTGTTGTGGCCGTTGTCCAAGAGGTCGAGGTCGTGCTCAACTCATTC
TGCGGCAATATCCGGCACACACCAG
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Coding sequence (CDS) from alignment at chr_00:12956141..12959515-

>Ec-00_007980.4 ID=Ec-00_007980.4|Name=Ec-00_007980.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=372bp|location=Sequence derived from alignment at chr_00:12956141..12959515- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACATCGACACGCCGCGCCCTGGGGAAAGGGACGGGGCCTCTGCATC
GGCATCGTTCGCAACGACATCCGGGCCGAAGATGCCTCCAACCGCGGAGA
TACGCAGGGCTCTGCTGGGCGCAGTGGAGGAGCTGTCCAACCACGGCCTC
AAGCTCGCCACGAAATGGGCTACTGAGCAGCTGGTCGGTCTGCCTGACGA
TGAGGCGCCCGACGACTTGCGGTACGCGGCGGAACCAAACCCAGCCACCC
CTCAGAAGCAGGAAGGGGGGGCGAATCTGCGGCTTCAGGGCCGCGTAGCG
TTTGCGAAGTCCCTGATGGATGTCGGTCGAGGTCGTGCTCAACTCATTCT
GCGGCAATATCCGGCACACACC
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Synonyms
The feature 'Ec-00_007980.4' has the following synonyms
Synonym
Esi0589_0001
Esi_0589_0001