Ec-00_007960.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007960.1
Unique NameEc-00_007960.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length78
Homology
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BLAST of Ec-00_007960.1 vs. uniprot
Match: D7G4Y7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y7_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.410e-49
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 
Query:    1 MGQRHSPGHRQAEGILEELLAEHGIGETEGQMEFRTSHVANYWMARIFGGASNVSGSVDVGKTWYLSVALTGVIPGS 231
            MGQRHSPGHRQAEGILEELLAEHGIGETEGQMEFRTSHVANYWMARIFGGASNVSGSVDVGKTWYLSVALTGVIPGS
Sbjct:    1 MGQRHSPGHRQAEGILEELLAEHGIGETEGQMEFRTSHVANYWMARIFGGASNVSGSVDVGKTWYLSVALTGVIPGS 77
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BLAST of Ec-00_007960.1 vs. uniprot
Match: D7G6F5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6F5_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.740e-14
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 
Query:   94 MEFRTSHVANYWMARIFGGASNVSGSVDVGKTW 192
            MEFRTSHVANYWMARIF GASNVSGSVDVGKTW
Sbjct:    1 MEFRTSHVANYWMARIFDGASNVSGSVDVGKTW 33
The following BLAST results are available for this feature:
BLAST of Ec-00_007960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4Y7_ECTSI1.410e-49100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6F5_ECTSI1.740e-1496.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12916919..12919451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length234
Hectar predicted targeting categoryother localisation
Gene idEc-00_007960.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007960Ec-00_007960Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12916919..12919451 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007960.1.3Ec-00_007960.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12916919..12916961 -
Ec-00_007960.1.2Ec-00_007960.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12917206..12917363 -
Ec-00_007960.1.1Ec-00_007960.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12919419..12919451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007960.1CDS:Ec-00_007960.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12916919..12916961 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007960.1Ec-00_007960.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12916919..12919451 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007960.1 ID=Ec-00_007960.1|Name=Ec-00_007960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=78bp
MGQRHSPGHRQAEGILEELLAEHGIGETEGQMEFRTSHVANYWMARIFGG
ASNVSGSVDVGKTWYLSVALTGVIPGS*
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spliced messenger RNA

>Ec-00_007960.1 ID=Ec-00_007960.1|Name=Ec-00_007960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=234bp|location=Sequence derived from alignment at chr_00:12916919..12919451- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCAGCGTCACTCCCCAGGACATCGCCAGGCGGAAGGGATATTGGA
AGAACTTCTCGCCGAACACGGCATTGGCGAAACTGAGGGCCAGATGGAGT
TCCGGACTTCTCACGTGGCGAATTACTGGATGGCACGAATTTTCGGCGGG
GCGTCCAACGTCAGCGGCTCCGTGGATGTCGGGAAAACATGGTACCTTTC
CGTGGCGTTAACAGGAGTTATCCCGGGGAGCTAA
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protein sequence of Ec-00_007960.1

>Ec-00_007960.1 ID=Ec-00_007960.1|Name=Ec-00_007960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=78bp
MGQRHSPGHRQAEGILEELLAEHGIGETEGQMEFRTSHVANYWMARIFGG
ASNVSGSVDVGKTWYLSVALTGVIPGS*
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mRNA from alignment at chr_00:12916919..12919451-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007960.1 ID=Ec-00_007960.1|Name=Ec-00_007960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2533bp|location=Sequence derived from alignment at chr_00:12916919..12919451- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGCAGCGTCACTCCCCAGGACATCGCCAGGTCAGGTTTGAACATGT
TCTGTTGCTATGTAGATGCTTCAACTCGGGCGGTGGTGCTAGCACAATAG
CTTTGGTGGCACGTTTCGTGGCAGAGGTGGTACGGATTTTTTTTGAGAAA
GTTTCCTGCAGGGGCATCCCTCGTTTGAAATAAAAATTTCCTCTTTTTTT
GCATGCGGATGAGTCAACTTCTGCCGCTGGGTCCGTCTAATATCTGCGTT
GCACTCAAAAACGGATGCGGTTCGTATTCTCGGCAACCCCGCGACCAGGT
GCTTTGTCAAAGCCGACACGCTTCCGTAGGAGATGGCGGCTGAGCTCACC
AACCTCCACGGGAAAACCCAGGCCCGCATCCACGAGCCTGCGTTGAGGTC
CCTCACGAAGAGTGTCCACTCGTTGAGCACGAGCGTGCACGACGCGCAGC
AGCAGGGGTCTCGCATCGAAGACGAGGACCTGAGTGAAATGTTCGCAGAA
CTCAACGTCTCACCCGGAAAGCCTGCCCCGGAGGAGGCGGTGGACTTAGT
TCAGGCGTGGGCTACCATCGAGGATGACGATGACGTGGTGGAGGCTTTTC
GACAGGATGCAGCGGACGAAATGACGGCACAGCTAGCGGGAACGCGCCTA
TCTACCTGCCGCGAGGAGGAATCCGAAGATGAGGCGGACAGTGATCATGA
GGACACGGGGGGCGGCCGCCGCGCCCCACCGGGTTACGGTGAACTGTCTT
CTCACTTCGGCGTCCTGGAGGTGGCCGCGCGGGAGAGTGGAAACGGGGAC
GCTGCGTTCCACCTATCGAAAGCGAAGATGGCGATGATCGCGGCGCATGC
CGCTAAGGGCGTGCGCCAGACAGACATGAGAGAGTTTGTTGATGAGTGAG
GGGGGGACAGCTATACCGCAGTTTTTTTCTTTTTGTTTTGTTTTATTTTT
GTCCGCTTCGTTGCTGGCGCGTTTATTGGTTTTGTTGGCGTGTCTCATCA
CGCAACATCGTAGGGAGGGAGCGAGGAACGTGATATTTTTTCAAGTATAC
TAAGTTGCACGGACGGGAGCTGTACACGGGGTTTGGCTCCGAAGGTGAAT
TCTGCGCGTGCATGCGGGAATGGTTTCGCGGCAAACTCAGCTATCAGAGT
GGAACCCACATTTGTCTCAGAAAAGGCTGCCCCTGCCGCCCACAAAGTAT
ATTCACCACACTCGATCCACATGCTACTCTGTTGGCCTCGCAAATGGTAA
GCGATACACCATGAACTCAAACAGCAGTGCCTCAGTAGTGCCAGACCGGC
ACTACTGAGGGATATCGATCACCCGAATAGTGCCGTTTGGCACTATTGAG
GCACTATTCCCAGTTGTGCCGGTGCCCGCTATAGTGCCGGTGAACGCCCT
GCGCACGTACCGGCACTATAGAGGGCCCCCCACTGTACTACAAGATTTTA
AGTCGTCACCTGCGGACCATTACCCCCCTCTAAGTACAACTTACTAGCTC
TCCGTCTTGTACAACAGCATTCATCGAGTCCACGAACACGCTCTTTTCAC
TAGTAGCCGCACCTACGTGTGAAGCTGTCGCCTTCACCATCTACTTTCCA
ATATGTCCTCGACTATGTGCCTGAAGGACAACGACCCCAGTCCTAAATTT
GTACCTGCATCCCCTGGTCCATGTTGGTACTCCTTGATGGCACGACCATG
GACATCCCGCACACCCTAGACCTCCTTAACCTTGGTTTGTTCGGTCATGT
TATGTTTTCCTCTCTACTTAAACAAAACATATGCGCCCCCCTTTGACCCA
GTCAGACACTCCGTTTCAGCATTTCGACTTCGTCGTTTCCGACATCCTTC
AACGCGTCGTGTACGACCTTCACCTTGACACACCCAGTGGGTTGTGTACT
CCTCTTGTTATTTTTTGCCAACTGCGCCTACCAAGCTATTCTCTGTCACC
TCTCCTCTTCTATTCCAGATTGCCTGTGTCTCTTCCCCGACCTTAGGGAT
TGGATCCCATATTGAGACTGATGACGATCCCTCACCATTTTTTCCCATCC
TACTCTCCGGGGGGGGGGCTCGCCTTCACTCGTAACAGGCGGAAGGGATA
TTGGAAGAACTTCTCGCCGAACACGGCATTGGCGAAACTGAGGGCCAGAT
GGAGTTCCGGACTTCTCACGTGGCGAATTACTGGATGGCACGAATTTTCG
GCGGGGCGTCCAACGTCAGCGGCTCCGTGGATGTCGGGAAAACATGGTGA
GGCATTTTCCTCATTATCCTCTCCGATTAGTACTGTAACAGCAGGCAGGA
TATATGCGCGCGTCAAGCGGTTTGGTTAGGACCCCTGCGTGGACACTTGA
GCTGCGAGCGCGTTCTTCGCGGCCGCTACCTCTCGAATAACAGGCCAAGA
CGAGGCTAGTCGATCTGCCCCGCGTCACCTCTAATGTGTTTCCATCCACT
TCCCTAACCGTGGCTACAAACACTTGACTAACGGATTGAGGTACCTTTCC
GTGGCGTTAACAGGAGTTATCCCGGGGAGCTAA
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Coding sequence (CDS) from alignment at chr_00:12916919..12919451-

>Ec-00_007960.1 ID=Ec-00_007960.1|Name=Ec-00_007960.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=234bp|location=Sequence derived from alignment at chr_00:12916919..12919451- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGCAGCGTCACTCCCCAGGACATCGCCAGGCGGAAGGGATATTGGA
AGAACTTCTCGCCGAACACGGCATTGGCGAAACTGAGGGCCAGATGGAGT
TCCGGACTTCTCACGTGGCGAATTACTGGATGGCACGAATTTTCGGCGGG
GCGTCCAACGTCAGCGGCTCCGTGGATGTCGGGAAAACATGGTACCTTTC
CGTGGCGTTAACAGGAGTTATCCCGGGGAGCTAA
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Synonyms
The feature 'Ec-00_007960.1' has the following synonyms
Synonym
Esi0588_0005
Esi_0588_0005