Ec-00_007940.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007940.1
Unique NameEc-00_007940.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length121
Homology
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BLAST of Ec-00_007940.1 vs. uniprot
Match: D7G4Y6_ECTSI (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Y6_ECTSI)

HSP 1 Score: 248 bits (632), Expect = 2.610e-83
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 
Query:    1 MRPSAAFPEQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKVVALGRVLRSPTALHKMAGASRLV 360
            MRPSAAFPEQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKVVALGRVLRSPTALHKMAGASRLV
Sbjct:    1 MRPSAAFPEQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKVVALGRVLRSPTALHKMAGASRLV 120
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BLAST of Ec-00_007940.1 vs. uniprot
Match: A0A6H5K904_9PHAE (PPIase cyclophilin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K904_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 2.500e-53
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:   25 EQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKV 291
            E YYDNT+FHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGK+
Sbjct:   78 EGYYDNTIFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKI 166
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BLAST of Ec-00_007940.1 vs. uniprot
Match: A0A835YS24_9STRA (Cyclophilin-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS24_9STRA)

HSP 1 Score: 156 bits (395), Expect = 8.600e-43
Identity = 72/89 (80.90%), Postives = 79/89 (88.76%), Query Frame = 1 
Query:   25 EQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKV 291
            E YYDNTVFHRII KFMVQGGDPTGTGKGG+S++GKPF+DE H+RIKFNHRGQVAMANEN P TN SQFFFTLD A  L+ KHTIFGK+
Sbjct:   46 EGYYDNTVFHRIISKFMVQGGDPTGTGKGGDSIWGKPFKDECHSRIKFNHRGQVAMANENTPNTNRSQFFFTLDKADWLNGKHTIFGKI 134
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BLAST of Ec-00_007940.1 vs. uniprot
Match: H3G7X8_PHYRM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7X8_PHYRM)

HSP 1 Score: 145 bits (366), Expect = 2.370e-42
Identity = 67/91 (73.63%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:   25 EQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKVVA 297
            E YYD T+FHRII  FMVQGGDPTGTG GGESVY   F DE H+R++FNHRG +AMANEN+P +NHSQFFFTLD+   LDKKHTIFGKV+A
Sbjct:   32 EGYYDQTIFHRIIASFMVQGGDPTGTGDGGESVYEGAFIDEFHSRLRFNHRGLLAMANENKPNSNHSQFFFTLDACDFLDKKHTIFGKVLA 122
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BLAST of Ec-00_007940.1 vs. uniprot
Match: A0A2P4XDN1_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XDN1_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.050e-41
Identity = 67/89 (75.28%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:   25 EQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKV 291
            E YYD T+FHRII  FMVQGGDPTG+G GGES+YG  F DE H+R+KFNHRG +AMANEN+P TNHSQFFFTLD+   LDKKHTIFGKV
Sbjct:   46 EGYYDKTIFHRIISGFMVQGGDPTGSGNGGESIYGGAFVDEFHSRLKFNHRGLLAMANENKPNTNHSQFFFTLDACDFLDKKHTIFGKV 134
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BLAST of Ec-00_007940.1 vs. uniprot
Match: A0A7S3HSD9_9STRA (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HSD9_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.530e-41
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:   25 EQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKV 291
            E YYD+T+ HRI++ FMVQ GDPTGTG GG+S++G+PF+DE H RIKFNHRGQVAMANEN P TN SQFF TLD+   LD+KHTIFGKV
Sbjct:   33 EGYYDSTIVHRIVKGFMVQMGDPTGTGTGGKSIWGRPFKDEAHGRIKFNHRGQVAMANENAPNTNQSQFFITLDACEWLDRKHTIFGKV 121
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BLAST of Ec-00_007940.1 vs. uniprot
Match: D0NHA6_PHYIT (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phytophthora TaxID=4783 RepID=D0NHA6_PHYIT)

HSP 1 Score: 142 bits (358), Expect = 7.320e-41
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:   25 EQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKV 291
            E YYD T+FHRII  FMVQGGDPTGTG GGES+Y   F DE H+R+KFNHRG +AMANEN+P +NHSQFFFTLD+   L+KKHTIFGKV
Sbjct:   46 EGYYDQTIFHRIIAGFMVQGGDPTGTGTGGESIYSGAFIDEFHSRLKFNHRGLLAMANENKPNSNHSQFFFTLDACDFLNKKHTIFGKV 134
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BLAST of Ec-00_007940.1 vs. uniprot
Match: F0YDY1_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDY1_AURAN)

HSP 1 Score: 143 bits (360), Expect = 1.460e-40
Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:   25 EQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKV 291
            E YYD T FHR+I  FM QGGDPTGTG+GG+SV+GKPFRDE H RI+FNHRGQ+AMANEN P TN +QFFFTLD+ + LD KHTIFG V
Sbjct:   46 EGYYDRTCFHRVIPGFMAQGGDPTGTGEGGDSVWGKPFRDETHARIRFNHRGQLAMANENRPDTNRAQFFFTLDACSWLDGKHTIFGTV 134
[Close]
BLAST of Ec-00_007940.1 vs. uniprot
Match: A0A329S713_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S713_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.620e-40
Identity = 68/89 (76.40%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:   25 EQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKV 291
            E YYD T+FHRII  FMVQGGDPTGTG+GGES+YG  F DE H+R+KFNHRG +AMANEN+P TNHSQFFFTLD+   LDKKHTIFGKV
Sbjct:   46 EGYYDQTIFHRIIASFMVQGGDPTGTGQGGESIYGGAFIDEFHSRLKFNHRGLLAMANENKPNTNHSQFFFTLDACDFLDKKHTIFGKV 134
[Close]
BLAST of Ec-00_007940.1 vs. uniprot
Match: K3WTN7_GLOUD (PPIase cyclophilin-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTN7_GLOUD)

HSP 1 Score: 148 bits (374), Expect = 3.300e-40
Identity = 67/89 (75.28%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:   25 EQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEIHTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKV 291
            E YYD+T+FHRII  FMVQGGDPTGTG GGES+YG  F DE H+R+KFNHRG VAMANEN+P TNHSQFFFTLD+   L+KKHTIFGK+
Sbjct:   46 EGYYDDTIFHRIIAGFMVQGGDPTGTGNGGESIYGGAFIDEFHSRLKFNHRGLVAMANENKPNTNHSQFFFTLDACEFLEKKHTIFGKI 134
The following BLAST results are available for this feature:
BLAST of Ec-00_007940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4Y6_ECTSI2.610e-83100.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Ectoca... [more]
A0A6H5K904_9PHAE2.500e-5396.63PPIase cyclophilin-type domain-containing protein ... [more]
A0A835YS24_9STRA8.600e-4380.90Cyclophilin-type peptidyl-prolyl cis-trans isomera... [more]
H3G7X8_PHYRM2.370e-4273.63Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytop... [more]
A0A2P4XDN1_9STRA1.050e-4175.28Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A7S3HSD9_9STRA5.530e-4171.91Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
D0NHA6_PHYIT7.320e-4173.03Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phytop... [more]
F0YDY1_AURAN1.460e-4073.03Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
A0A329S713_9STRA2.620e-4076.40Peptidyl-prolyl cis-trans isomerase n=1 Tax=Phytop... [more]
K3WTN7_GLOUD3.300e-4075.28PPIase cyclophilin-type domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12866947..12868751 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score251.5
Seed ortholog evalue2e-64
Seed eggNOG ortholog2880.D7G4Y6
Preferred namecwc27
Length363
KEGG koko:K12737
Hectar predicted targeting categoryother localisation
Gene idEc-00_007940.1
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0885@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007940Ec-00_007940Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12866947..12868751 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007940.1.2Ec-00_007940.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12866947..12867021 -
Ec-00_007940.1.1Ec-00_007940.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12868464..12868751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007940.1CDS:Ec-00_007940.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12866947..12867021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007940.1Ec-00_007940.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12866947..12868751 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007940.1 ID=Ec-00_007940.1|Name=Ec-00_007940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=121bp
MRPSAAFPEQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEI
HTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKVVAL
GRVLRSPTALHKMAGASRLV*
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spliced messenger RNA

>Ec-00_007940.1 ID=Ec-00_007940.1|Name=Ec-00_007940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=363bp|location=Sequence derived from alignment at chr_00:12866947..12868751- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCGTCTGCCGCCTTTCCCGAGCAGTACTACGACAACACGGTATT
CCACCGAATTATCCGCAAGTTCATGGTGCAGGGGGGAGACCCCACGGGCA
CGGGCAAGGGCGGGGAGAGCGTCTACGGTAAGCCGTTCCGGGACGAGATC
CACACGCGCATCAAGTTCAACCACCGCGGGCAGGTGGCCATGGCCAACGA
GAACGAGCCCCGCACCAACCACAGCCAGTTTTTCTTCACGCTAGACAGCG
CTGCGCATCTGGACAAGAAGCACACCATCTTTGGCAAGGTTGTCGCGCTC
GGTCGTGTGTTGCGATCTCCAACTGCGTTGCACAAAATGGCAGGTGCTTC
TCGTCTTGTGTGA
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protein sequence of Ec-00_007940.1

>Ec-00_007940.1 ID=Ec-00_007940.1|Name=Ec-00_007940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=121bp
MRPSAAFPEQYYDNTVFHRIIRKFMVQGGDPTGTGKGGESVYGKPFRDEI
HTRIKFNHRGQVAMANENEPRTNHSQFFFTLDSAAHLDKKHTIFGKVVAL
GRVLRSPTALHKMAGASRLV*
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mRNA from alignment at chr_00:12866947..12868751-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007940.1 ID=Ec-00_007940.1|Name=Ec-00_007940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1805bp|location=Sequence derived from alignment at chr_00:12866947..12868751- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGCCCGTCTGCCGCCTTTCCCGAGCAGTACTACGACAACACGGTATT
CCACCGAATTATCCGCAAGTTCATGGTGCAGGGGGGAGACCCCACGGGCA
CGGGCAAGGGCGGGGAGAGCGTCTACGGTAAGCCGTTCCGGGACGAGATC
CACACGCGCATCAAGTTCAACCACCGCGGGCAGGTGGCCATGGCCAACGA
GAACGAGCCCCGCACCAACCACAGCCAGTTTTTCTTCACGCTAGACAGCG
CTGCGCATCTGGACAAGAAGCACACCATCTTTGGCAAGGTGTGTACGCGT
ACTACATGTGGTAACAGTTCTCGGCTTCGCGAGAAGTTTTTTGTTTCTTC
AACACAACCAATTCATCTCTTCTACAGATGCGAGTCCGAGATAGACTAGC
AATGATGAGGACCGACAAAACCAACTTGAATTCACTTCTGCGGTTCCCCG
AGCAGCGTACCGTAGATTGCATAAGATATCACAACCCCTGGATCGATTTT
CAACGGTCGATTACTCCACGACCAAGAATATGCCGAAGGCAAACGAACCG
TGTTCGGAAAGCTCTCGACGGGACGGTTCCAACTCCGCCATTTTCGTCAC
CGTCACTTTTTTCCTTGCCAAGTAACCAAGCTTTGAAAATCGGCCCAGGG
GGTGTGATATCTTGTGCAACCAACGGTATATCGGCATCTCCCCTGCGGCT
ATCAGGCTCAACAAGACAGCAGTGGGGGGGTTGGTTACCAGTTTTACGGA
GCGGTAGTGGTGGGATACGTGCTGGACTGAGGCAGACGTGCTGCTTACCT
TATAGGGCAAACAAACGTGTTCGGTTGTGTTGTTTTGGGGTCAGTGGCGT
TGGCCCTCGTAAAGAGACGGCCACGTGGTGGTTCTGTGCATGAGTGTTCT
GCCGTGGTCACCCCAGACAACGAAACGAACGGAGACGGTATGACCAGCCA
TCTCACGCTCCCATCTCGGGCACAACCCTGCCCCCGTTCTACTGTTTAGA
CTCTTCACTCTTTTCCTTGCAATGCCAACACAACATCCCTCCACCCCCCA
TGTGCTTCGTCGTTGTGAAACGTAACCCCGGGCCGGGGAAAACCCGGCAT
GTCGCTCCGTCCCGGCGTAGTACATAGGGATGCGAGGTCAATGGTCTATA
GATGGTCAAGCACCCTCGAGGCAGTTATACAGTGCTTATTTACTGTCTCT
GGAAGTGAAAGCACCAGAAAAAATATTAAGTCATACCCAGCTGTCATCAG
TACGCAAAGAAGCTTGAGTACCCCCTCCCCCCCCCCCCCCCCTCCACACC
TTTCAACACGCGCGCCCCGGGGCGGTCGTACGCGTCCGTCGTCTTATTCA
TCTGGCAACATAACGTGGTTGAAATATGTTCATCTCATCGTCATCGTCGT
TTCTCCACTGCTATAGCTTTTCGCCCCTCGGGGCTATTTGCCCCGACTAT
ATTTCGTGTCTTCCCAGCAAGCATCAGTTCATTGTATTTTCTCACCAAAA
AGAGCACAGAAACACCGCTGCCACCGCATGTCTCCGAAACAGGGCAGAAT
TTCTAGATTTTCTTGAACCAATTTAATTCATTCGTGTCTTGCACGCGATT
TTAATTCAATTATGAACACCGAGACGCAGGCCATGCAGAGAAGGGCACGT
TGGCCGCCGGAACCTCCCGTTTGGCCGACACAACATCTATAATAGAGCCC
CCCATGTCTCTAACTTGCTAACGCCCTCAGGTTGTCGCGCTCGGTCGTGT
GTTGCGATCTCCAACTGCGTTGCACAAAATGGCAGGTGCTTCTCGTCTTG
TGTGA
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Coding sequence (CDS) from alignment at chr_00:12866947..12868751-

>Ec-00_007940.1 ID=Ec-00_007940.1|Name=Ec-00_007940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=363bp|location=Sequence derived from alignment at chr_00:12866947..12868751- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGCCCGTCTGCCGCCTTTCCCGAGCAGTACTACGACAACACGGTATT
CCACCGAATTATCCGCAAGTTCATGGTGCAGGGGGGAGACCCCACGGGCA
CGGGCAAGGGCGGGGAGAGCGTCTACGGTAAGCCGTTCCGGGACGAGATC
CACACGCGCATCAAGTTCAACCACCGCGGGCAGGTGGCCATGGCCAACGA
GAACGAGCCCCGCACCAACCACAGCCAGTTTTTCTTCACGCTAGACAGCG
CTGCGCATCTGGACAAGAAGCACACCATCTTTGGCAAGGTTGTCGCGCTC
GGTCGTGTGTTGCGATCTCCAACTGCGTTGCACAAAATGGCAGGTGCTTC
TCGTCTTGTGTGA
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Synonyms
The feature 'Ec-00_007940.1' has the following synonyms
Synonym
Esi0587_0001
Esi_0587_0001