Ec-00_007870.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007870.1
Unique NameEc-00_007870.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length46
Homology
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BLAST of Ec-00_007870.1 vs. uniprot
Match: A0A6H5JQC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC3_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.090e-28
Identity = 57/72 (79.17%), Postives = 60/72 (83.33%), Query Frame = 3 
Query:  138 KSNRPPRNTRRSAAAASATAWRWLSRPHSDCALTGGPAFTSTPQPDR*TATFVDATIAAYASPCYTALVPGT 353
            ++ RP RNTRRSAAAASATAWRWL +PHS C LTGGPAFTS  QPD  T TFVDATIAAYASPCYTA V GT
Sbjct:   67 RATRPTRNTRRSAAAASATAWRWLCQPHSGCELTGGPAFTSALQPDCQTVTFVDATIAAYASPCYTARVSGT 138
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BLAST of Ec-00_007870.1 vs. uniprot
Match: A0A6H5JP07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP07_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 9.030e-8
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 3 
Query:  264 PQPDR*TATFVDATIAAYASPCYTALVPGTGGGLRWPWGVV*PQPHELSDQGSSLEDVLLRLGGVPT 464
            P+PDR TA FVDAT AAYA PCYTALVPG G  L    G V  +     DQGS +E+++LRLG V T
Sbjct:   62 PRPDRQTAAFVDATTAAYALPCYTALVPGAGATLDL--GRVFDRLG--CDQGS-VEELVLRLGEVAT 123
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BLAST of Ec-00_007870.1 vs. uniprot
Match: A0A6H5JHI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.860e-7
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 3 
Query:  264 PQPDR*TATFVDATIAAYASPCYTALVPGTGGGLRWPWGVV*PQPHELSDQGSSLEDVLLRLGGVPT 464
            P+PDR TA FVDAT AAYA PCYTALVPG G  L    G V  +     DQGS +E++  RLG V T
Sbjct:  257 PRPDRQTAAFVDATTAAYALPCYTALVPGAGAMLDL--GRVFDRNRLGCDQGS-VEELAHRLGEVAT 320
The following BLAST results are available for this feature:
BLAST of Ec-00_007870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQC3_9PHAE1.090e-2879.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP07_9PHAE9.030e-858.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI4_9PHAE1.860e-756.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12724610..12725775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length520
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_007870.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007870Ec-00_007870Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12724610..12725775 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007870.1.1Ec-00_007870.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12724610..12724690 +
Ec-00_007870.1.2Ec-00_007870.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12725337..12725775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007870.1CDS:Ec-00_007870.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12724610..12724690 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0078703UTR:Ec-00_007870.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 12725394..12725775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007870.1Ec-00_007870.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12724610..12725393 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007870.1 ID=Ec-00_007870.1|Name=Ec-00_007870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=46bp
MRSRCLHRFGFKICGRTEVRGKGVVHHSPFSLPKYAGAIEEKGNT*
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spliced messenger RNA

>Ec-00_007870.1 ID=Ec-00_007870.1|Name=Ec-00_007870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=520bp|location=Sequence derived from alignment at chr_00:12724610..12725775+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCCCGTTGCTTGCACAGGTTTGGCTTCAAGATTTGCGGCCGAAC
GGAAGTGAGAGGGAAGGGCGTTGTACATCACTCCCCTTTCTCTCTCCCGA
AATACGCCGGAGCTATCGAGGAGAAAGGAAATACTTGAGAGAGTAACAGG
CCGCCTCGCAACACGCGGCGTTCCGCCGCGGCGGCTTCGGCGACTGCTTG
GCGGTGGCTCTCTCGGCCCCACAGCGACTGCGCGCTCACCGGTGGGCCCG
CGTTTACCTCCACTCCTCAACCTGACCGCTAGACGGCCACGTTCGTGGAC
GCGACCATCGCGGCCTATGCTTCGCCGTGCTACACCGCGCTGGTGCCGGG
CACGGGGGGGGGGCTACGTTGGCCCTGGGGGGTCGTTTGACCGCAACCGC
ATGAGTTGAGCGATCAAGGCTCGTCGTTAGAGGACGTGCTTTTGCGTTTG
GGGGGAGTGCCCACATCTGAGTGCCGCTTCTTCCAACAGCGCTGCTCACT
GGGCACACGACAAACCAGAG
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protein sequence of Ec-00_007870.1

>Ec-00_007870.1 ID=Ec-00_007870.1|Name=Ec-00_007870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=46bp
MRSRCLHRFGFKICGRTEVRGKGVVHHSPFSLPKYAGAIEEKGNT*
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mRNA from alignment at chr_00:12724610..12725775+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007870.1 ID=Ec-00_007870.1|Name=Ec-00_007870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1166bp|location=Sequence derived from alignment at chr_00:12724610..12725775+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGTTCCCGTTGCTTGCACAGGTTTGGCTTCAAGATTTGCGGCCGAAC
GGAAGTGAGAGGGAAGGGCGTTGTACATCACGCTAGCCAGCATTTAGAAG
ACATCACGCTTTTCTAATTACTGTCGACTGCAACCATACACACAACAACT
TGCTGACGTCCCCGGCTTGATTTATTTTTCCGCTGAACACGTGCACGAGG
CAGGGCACATCTATCTTCATTGTGGTTGCGTTCGTCCTTTGTTTCATTGA
AGTCCTAGGCCGTTTGCCAGTCGCTGTGAAACCTTCTTCGTAGGTACCCC
TCCTCTGGTGGTTGGTGTGGACTGCCTCCGTGGGTCACGGATAACAAGTT
ATTAGTCATGTAGACTAAATACTTCTTCTACCAGGTAATCCAAGATACCC
TACTGGCATAAGCCAAGATACCCTACTGGTAAAAGTTGACGTCATGTTCT
CGAATTTGACACGCTACTGACAAATGATGACATCATATTCTCGAACTTGC
CATGACATATTATATCCTATGTATATCTGGAAGATGTACGGAAAACAACA
CCAAACGTACCTCCTAGAAACAATGTTCTTATATCAATGCGTCAACCACA
AACTGTCAACCATCCAGCCAGATGTACAAGTAATCTCGGATTTGAGACGA
ATCCGGATTTCGGAACGAAATCGGGAAGAGTCAGATATCCCATGAAGCAT
GTTGGAAAATGACTCTACCTTGTTCAGTCCCCTTTCTCTCTCCCGAAATA
CGCCGGAGCTATCGAGGAGAAAGGAAATACTTGAGAGAGTAACAGGCCGC
CTCGCAACACGCGGCGTTCCGCCGCGGCGGCTTCGGCGACTGCTTGGCGG
TGGCTCTCTCGGCCCCACAGCGACTGCGCGCTCACCGGTGGGCCCGCGTT
TACCTCCACTCCTCAACCTGACCGCTAGACGGCCACGTTCGTGGACGCGA
CCATCGCGGCCTATGCTTCGCCGTGCTACACCGCGCTGGTGCCGGGCACG
GGGGGGGGGCTACGTTGGCCCTGGGGGGTCGTTTGACCGCAACCGCATGA
GTTGAGCGATCAAGGCTCGTCGTTAGAGGACGTGCTTTTGCGTTTGGGGG
GAGTGCCCACATCTGAGTGCCGCTTCTTCCAACAGCGCTGCTCACTGGGC
ACACGACAAACCAGAG
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Coding sequence (CDS) from alignment at chr_00:12724610..12725775+

>Ec-00_007870.1 ID=Ec-00_007870.1|Name=Ec-00_007870.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=138bp|location=Sequence derived from alignment at chr_00:12724610..12725775+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGTTCCCGTTGCTTGCACAGGTTTGGCTTCAAGATTTGCGGCCGAAC
GGAAGTGAGAGGGAAGGGCGTTGTACATCACTCCCCTTTCTCTCTCCCGA
AATACGCCGGAGCTATCGAGGAGAAAGGAAATACTTGA
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Synonyms
The feature 'Ec-00_007870.1' has the following synonyms
Synonym
Esi582_0015
Esi_582_0015