Ec-00_007840.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007840.1
Unique NameEc-00_007840.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length336
Homology
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BLAST of Ec-00_007840.1 vs. uniprot
Match: D7G4P8_ECTSI (Inner membrane transport protein yicL n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P8_ECTSI)

HSP 1 Score: 652 bits (1683), Expect = 2.100e-236
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 1 
Query:    1 MEIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDAHASWNDLWCVAQAVGFGVAFTRIEFPGKSLQLSIEQLISVAALTGIWCIFSAGGHLAGFSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACLVAQSEQISELVGMGEGKGNDTLMDAEATDAEEGAEEPFQLQETEEVNDDDFPSSVLDEMVGVTEESDSESSFRMSMVQESTVPGGVYGGDPAFAGEEGTLRNNDNDVPAAAPVGWFGSYGKHEEMT 1005
            MEIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDAHASWNDLWCVAQAVGFGVAFTRIEFPGKSLQLSIEQLISVAALTGIWCIFSAGGHLAGFSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACLVAQSEQISELVGMGEGKGNDTLMDAEATDAEEGAEEPFQLQETEEVNDDDFPSSVLDEMVGVTEESDSESSFRMSMVQESTVPGGVYGGDPAFAGEEGTLRNNDNDVPAAAPVGWFGSYGKHEEMT
Sbjct:    1 MEIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDAHASWNDLWCVAQAVGFGVAFTRIEFPGKSLQLSIEQLISVAALTGIWCIFSAGGHLAGFSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACLVAQSEQISELVGMGEGKGNDTLMDAEATDAEEGAEEPFQLQETEEVNDDDFPSSVLDEMVGVTEESDSESSFRMSMVQESTVPGGVYGGDPAFAGEEGTLRNNDNDVPAAAPVGWFGSYGKHEEMT 335
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BLAST of Ec-00_007840.1 vs. uniprot
Match: A0A6H5KVB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB7_9PHAE)

HSP 1 Score: 596 bits (1537), Expect = 2.380e-210
Identity = 314/340 (92.35%), Postives = 320/340 (94.12%), Query Frame = 1 
Query:    1 MEIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDAHASWNDLWCVAQAVGFGVAFTRIE-----FPGKSLQLSIEQLISVAALTGIWCIFSAGGHLAGFSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACLVAQSEQISELVGMGEGKGNDTLMDAEATDAEEGAEEPFQLQETEEVNDDDFPSSVLDEMVGVTEESDSESSFRMSMVQESTVPGGVYGGDPAFAGEEGTLRNNDNDVPAAAPVGWFGSYGKHEEMT 1005
            MEIGVWVALGYFTQAIGLETSDASV CA LCSL+VVVVPLLDAVTGKGIKRVTVAAS LALVGTGFLELGDAHASWNDLWCVAQAVGFGVAFTRIE     FPGKSLQLSI QLISVAALTGIWC FSAGGHL  FSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVS L LKETMGPNALVGAGVILLACLVAQSEQISELVGMG GKGNDTLMDAEATDAEEGAEEPFQLQETEEVND DFPSSVLDEMVGVTEESDSESSFRMSMVQESTVPGG+YG  PAFAGEEG+LRNN+N+VPAA PVGWFGSYGKH+E T
Sbjct:  241 MEIGVWVALGYFTQAIGLETSDASV-CAFLCSLTVVVVPLLDAVTGKGIKRVTVAASLLALVGTGFLELGDAHASWNDLWCVAQAVGFGVAFTRIEHYMEKFPGKSLQLSIGQLISVAALTGIWCTFSAGGHLPDFSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSVLFLKETMGPNALVGAGVILLACLVAQSEQISELVGMGGGKGNDTLMDAEATDAEEGAEEPFQLQETEEVNDVDFPSSVLDEMVGVTEESDSESSFRMSMVQESTVPGGIYGEGPAFAGEEGSLRNNENNVPAATPVGWFGSYGKHKETT 579
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BLAST of Ec-00_007840.1 vs. uniprot
Match: A0A6H5KGW9_9PHAE (Integrase catalytic domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW9_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 5.890e-71
Identity = 160/293 (54.61%), Postives = 168/293 (57.34%), Query Frame = 1 
Query:  106 VVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDAHASWNDLWCVAQAVGFGVAFTRIE-----FPGKSLQLSIEQLISVAALTGIWCIFSAGGHLAGFSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACLVAQSEQISELVGMGEGKGNDTLMDAEATDAEEGAEEPFQLQETEEVNDDDFPSSVLDEMVGVTEESDSESSFRMSMVQESTVPGGVYGGDPAFAGEEGTLRNNDNDVPAAAPVG 969
            VVVPLL A TGKGIKRVTVAAS LALVGT FL LGDA ASWN LWCVAQAVGFGVAF RIE      PGKSLQLSI QLISVAALTGI              FVKDP ILAALSYTGLV TSL +WLET+CLEKVPA EM                       G   L+      LACLVA+ EQISE                                                       E+DSESSFRMSMVQE TVPGGV+G  PAF GEEG+LRNN+NDVPAAAPVG
Sbjct: 1506 VVVPLLGATTGKGIKRVTVAASLLALVGTWFLGLGDARASWNGLWCVAQAVGFGVAFARIEHYMEKLPGKSLQLSIGQLISVAALTGI-------------CFVKDPHILAALSYTGLVITSLDVWLETICLEKVPAVEM--------------------RPWGRMPLLERAWFFLACLVARIEQISE-------------------------------------------------------EADSESSFRMSMVQEHTVPGGVHGEGPAFVGEEGSLRNNENDVPAAAPVG 1710
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BLAST of Ec-00_007840.1 vs. uniprot
Match: A0A835Z0F0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0F0_9STRA)

HSP 1 Score: 223 bits (569), Expect = 3.090e-67
Identity = 121/232 (52.16%), Postives = 166/232 (71.55%), Query Frame = 1 
Query:    4 EIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDAHA-SWNDLWCVAQAVGFGVAFTRIE-----FPGKSLQLSIEQLISVAALTGIWCIFSAGGHLAGFSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACLVAQSEQISELVGMGEGKG 681
            E G+W+ALGY TQAIGL+++DA+   A +CSL+VV+VPL++ + GKGI+     A+ LAL+GTG LELGD+   +  DLW + QA GFG+AFTRIE     FPG++L L+  QL++VA ++  W +  +GG L   SF   P I  AL YTGL+TT+LA++LET+ L++V AAEMSVIF+TEPLWAT  +++LL ET+GP A +GA  IL ACL AQ  ++ EL+   + KG
Sbjct:  110 ECGLWIALGYITQAIGLQSTDAN-KSAFICSLTVVIVPLINWLRGKGIQWNNGIAALLALLGTGVLELGDSSVPTMGDLWSLGQAFGFGIAFTRIEHYMEKFPGQALSLAASQLLAVATVSLGWAVVDSGGVLPDLSFFGTPSIALALGYTGLITTALAVYLETIALQRVSAAEMSVIFATEPLWATGFASVLLGETLGPQAAIGAVFILAACLTAQGPKVLELIQARKLKG 340
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BLAST of Ec-00_007840.1 vs. uniprot
Match: A0A7S0TJA2_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TJA2_HEMAN)

HSP 1 Score: 165 bits (418), Expect = 4.020e-45
Identity = 100/222 (45.05%), Postives = 134/222 (60.36%), Query Frame = 1 
Query:    7 IGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDAHASW-NDLWCVAQAVGFGVAFTRIEF-----PGKSLQLSIEQLISVAALTGIWCIFSAG-----GHLAGF----SFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACL 627
            +G+  A+GY +Q + LET+DAS   A LCSL+VVV PLLDA TG  +K+   AA+ LA+ G G LELG   A    DLW + Q + FG  F ++E      PG+   L+  QL  VA  T  W + S G     G L       + +   Q+  AL +TGLVTT+L +WLETV L ++P+AE++V+FSTEPLW T  +A LL E +G N  VG G+I+ ACL
Sbjct:   78 VGLLAAVGYISQGLSLETADAST-AAFLCSLAVVVCPLLDAFTGVEVKKSAWAAALLAVGGAGVLELGGGSAPGAGDLWALVQPLAFGAGFWKMEHAMRDHPGQGGALTAVQLAVVALCTVAWTVLSPGSGTPMGELPAIDALVAALGQSQVQMALLWTGLVTTALTVWLETVALGRLPSAEVTVLFSTEPLWGTAFAAALLGEQVGANTFVGGGLIMAACL 298
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BLAST of Ec-00_007840.1 vs. uniprot
Match: K8YXG9_NANGC (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YXG9_NANGC)

HSP 1 Score: 167 bits (422), Expect = 4.530e-45
Identity = 98/225 (43.56%), Postives = 141/225 (62.67%), Query Frame = 1 
Query:    1 MEIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLEL-GDAHASWNDLWCVAQAVGFGVAFTRIE-----FPGKSLQLSIEQLISVAALTGIWCIFSAG--GHLAGFSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACLVAQSEQIS 651
            +E+G+WV LGY TQAIGLET++AS   A +CSL+VVVVPL+  + GK I   T  A  LA++G G L L G       DLW + Q +GFG+AF RIE      PGK++ L+  Q+ISV  ++ +W   + G   +    S + D     +L YTGL++++LA+ +E+  LE V + E S+IFSTEPL+A   SA++L E + P+ ++G  VIL ACL+ Q +  S
Sbjct:  125 LEVGLWVTLGYITQAIGLETTEAS-KSAFICSLTVVVVPLIQGLLGKKIAPTTWTACGLAVLGVGLLTLQGATGPVIGDLWSLGQPLGFGIAFMRIEHYMKQLPGKAIPLAAAQMISVFGVSAVWAAVTTGMFQNTGDLSILFDTPHFLSLLYTGLISSALAVVIESAALEYVSSEETSIIFSTEPLFAAATSAVVLGERLKPSGILGGFVILSACLLTQVDLTS 348
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BLAST of Ec-00_007840.1 vs. uniprot
Match: A0A7S1EIS4_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EIS4_HEMAN)

HSP 1 Score: 165 bits (418), Expect = 5.370e-44
Identity = 100/222 (45.05%), Postives = 134/222 (60.36%), Query Frame = 1 
Query:    7 IGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDAHASW-NDLWCVAQAVGFGVAFTRIEF-----PGKSLQLSIEQLISVAALTGIWCIFSAG-----GHLAGF----SFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACL 627
            +G+  A+GY +Q + LET+DAS   A LCSL+VVV PLLDA TG  +K+   AA+ LA+ G G LELG   A    DLW + Q + FG  F ++E      PG+   L+  QL  VA  T  W + S G     G L       + +   Q+  AL +TGLVTT+L +WLETV L ++P+AE++V+FSTEPLW T  +A LL E +G N  VG G+I+ ACL
Sbjct:  196 VGLLAAVGYISQGLSLETADAST-AAFLCSLAVVVCPLLDAFTGVEVKKSAWAAALLAVGGAGVLELGGGSAPGAGDLWALVQPLAFGAGFWKMEHAMRDHPGQGGALTAVQLAVVALCTVAWTVLSPGSGTPMGELPAIDALVAALGQSQVQMALLWTGLVTTALTVWLETVALGRLPSAEVTVLFSTEPLWGTAFAAALLGEQVGANTFVGGGLIMAACL 416
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BLAST of Ec-00_007840.1 vs. uniprot
Match: A0A7S2LCB5_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LCB5_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.190e-41
Identity = 102/246 (41.46%), Postives = 150/246 (60.98%), Query Frame = 1 
Query:    1 MEIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDA--HA----SWNDLWCVAQAVGFGVAFTRIE-----FPGKSLQLSIEQLISVAALTGIWCIFSAGG------HLAGFSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVIL---------LACLVAQSEQISELV 660
            +E+G+W A GY  QA+GL+T+DAS   A +CSL+VVVVP+LDA+TGK + R ++  + +AL G   LE+GD   H+    S  DL  + Q + FG+ F R+E     +P ++ +L+  QL SVAA++  +C+   GG      H     +V DP IL AL +TGL+TT+L I+LET+ L+ + AAE +++FSTEPLW    +  +L E +G  A+VGA +IL          A  V Q E++  LV
Sbjct:  264 LEVGMWNACGYVAQAVGLQTTDAS-KSAFICSLAVVVVPVLDALTGKRMTRKSIIGAIMALFGVSILEIGDGDIHSALSLSSGDLASLVQPLVFGMGFWRMEDAMHKYPSEAPRLTAAQLFSVAAVSISYCLLGGGGVDPPALHQI-VEWVADPSILMALLWTGLITTALTIYLETLALKTLSAAETTLLFSTEPLWGAAFATFMLSEKLGFGAVVGAALILGGIYVTNSPTAAPVEQEEKVPTLV 507
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BLAST of Ec-00_007840.1 vs. uniprot
Match: A0A7S2UQU1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQU1_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.200e-40
Identity = 92/226 (40.71%), Postives = 139/226 (61.50%), Query Frame = 1 
Query:    4 EIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDAHA-------SWNDLWCVAQAVGFGVAFTRIE-----FPGKSLQLSIEQLISVAALTGIWCI--FSAGGHLAG-----FSFVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLAC 624
            E+G W +LGY  QAIGL+T+DAS   A +CSL+VVVVP+LD +TGK +K   V  + +A+ G G LE+G   A       S+ D+  + Q V FG+ F R+E     FP  + +++  QL++V   +  +C   FS G  +         ++ DP IL AL +TGL+TT+L +++ET+ L+ + AAE ++IFSTEPLW +  +A ++ E  G +A +GAG+IL  C
Sbjct:   31 EVGAWNSLGYVAQAIGLQTTDAS-KSAFICSLAVVVVPMLDFLTGKKMKSREVIGASMAIFGVGLLEMGGMSAESGLGGISFGDMCSLVQPVAFGLGFWRMEKAMQRFPDDAARMTAAQLLAVFVSSATYCAISFSKGMEVIPDMTQLTEWLTDPMILGALFWTGLITTALTVYMETLALKTLSAAETTLIFSTEPLWGSAFAAAVVGERFGMDAAIGAGLILGGC 255
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BLAST of Ec-00_007840.1 vs. uniprot
Match: A0A7S0DWX9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DWX9_9CRYP)

HSP 1 Score: 151 bits (381), Expect = 1.600e-38
Identity = 93/227 (40.97%), Postives = 136/227 (59.91%), Query Frame = 1 
Query:    1 MEIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIKRVTVAASFLALVGTGFLELGDA-HASWNDLWCVAQAVGFGVAFTRIE-----FPGKSLQLSIEQLISVAALTG-IWCIFSAGG--HLAGFS-FVKDPQILAALSYTGLVTTSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVGAGVILLACLVAQSEQIS 651
            +EIG+WVA+GY  Q IGL T   +   A LCSL+VV+ PLLD   G+ +K  +  A+ LA+ G G LE+G A   S  DLW +AQ +GFG+ F +IE     FPGK  QL+  QL+ V  LTG IW +   GG   +A  S  +    + A++ +TGL+TT+L + L+T  L  + + E +V++STEP+W    +  +L E++G N  VG  +I+ ACL +  +  S
Sbjct:  163 VEIGLWVAMGYVVQGIGLNTGADASTAAFLCSLAVVICPLLDLFAGETVKAKSWVAAALAVFGVGVLEIGGASQPSIGDLWALAQPIGFGMGFWKIEKVMRNFPGKGPQLTAIQLV-VVWLTGLIWALVDNGGLPDMATVSQSLSQMPVAASVVWTGLITTALTVLLQTTSLGVLSSTETTVLYSTEPIWGAAFAHAVLGESIGMNTWVGGSLIISACLCSSVDTSS 388
The following BLAST results are available for this feature:
BLAST of Ec-00_007840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4P8_ECTSI2.100e-236100.00Inner membrane transport protein yicL n=1 Tax=Ecto... [more]
A0A6H5KVB7_9PHAE2.380e-21092.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGW9_9PHAE5.890e-7154.61Integrase catalytic domain-containing protein n=7 ... [more]
A0A835Z0F0_9STRA3.090e-6752.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0TJA2_HEMAN4.020e-4545.05Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
K8YXG9_NANGC4.530e-4543.56Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S1EIS4_HEMAN5.370e-4445.05Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S2LCB5_9STRA1.190e-4141.46Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S2UQU1_9STRA1.200e-4040.71Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0DWX9_9CRYP1.600e-3840.97Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12579224..12581392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score658.3
Seed ortholog evalue1.9e-186
Seed eggNOG ortholog2880.D7G4P8
Length1008
Hectar predicted targeting categorysignal peptide
Gene idEc-00_007840.1
EggNOG free text desc.EamA-like transporter family
EggNOG OGs2S0YE@2759,COG0697@1
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007840Ec-00_007840Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12579224..12581392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007840.1Ec-00_007840.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12579224..12581392 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007840.1.5Ec-00_007840.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12579224..12579719 -
Ec-00_007840.1.4Ec-00_007840.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12579977..12580093 -
Ec-00_007840.1.3Ec-00_007840.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12580305..12580411 -
Ec-00_007840.1.2Ec-00_007840.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12580721..12580903 -
Ec-00_007840.1.1Ec-00_007840.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12581288..12581392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007840.1CDS:Ec-00_007840.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12579224..12579719 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007840.1 ID=Ec-00_007840.1|Name=Ec-00_007840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=336bp
MEIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIK
RVTVAASFLALVGTGFLELGDAHASWNDLWCVAQAVGFGVAFTRIEFPGK
SLQLSIEQLISVAALTGIWCIFSAGGHLAGFSFVKDPQILAALSYTGLVT
TSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVG
AGVILLACLVAQSEQISELVGMGEGKGNDTLMDAEATDAEEGAEEPFQLQ
ETEEVNDDDFPSSVLDEMVGVTEESDSESSFRMSMVQESTVPGGVYGGDP
AFAGEEGTLRNNDNDVPAAAPVGWFGSYGKHEEMT*
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spliced messenger RNA

>Ec-00_007840.1 ID=Ec-00_007840.1|Name=Ec-00_007840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1008bp|location=Sequence derived from alignment at chr_00:12579224..12581392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATAGGGGTGTGGGTTGCTCTCGGGTACTTCACTCAGGCCATCGG
CTTGGAAACCTCGGATGCCTCCGTCTACTGCGCCTGTCTCTGCAGCTTGT
CGGTGGTGGTCGTCCCATTGCTGGATGCTGTCACTGGCAAGGGCATCAAG
CGCGTGACGGTGGCGGCGTCTTTTCTTGCCCTCGTCGGCACCGGGTTTCT
TGAGTTGGGAGACGCCCACGCGTCTTGGAACGATCTGTGGTGTGTGGCTC
AGGCCGTCGGGTTCGGCGTGGCTTTCACACGGATTGAGTTCCCGGGGAAG
AGCTTACAGCTGTCCATCGAGCAGCTGATATCCGTCGCCGCACTGACAGG
AATCTGGTGTATCTTTTCAGCCGGCGGCCATCTTGCAGGTTTCAGCTTCG
TCAAAGATCCTCAAATTTTGGCTGCTTTGAGCTACACCGGGCTGGTGACC
ACCTCGCTCGCTATTTGGCTGGAGACTGTTTGCCTGGAGAAAGTACCTGC
GGCTGAAATGAGCGTTATATTTAGCACGGAGCCTCTGTGGGCCACGCTGG
TATCGGCGCTGCTCTTGAAAGAGACCATGGGGCCGAATGCCCTTGTTGGA
GCGGGCGTAATTCTGTTGGCGTGCCTGGTTGCTCAAAGCGAGCAAATATC
GGAGCTAGTGGGCATGGGGGAGGGCAAGGGCAACGACACGCTCATGGACG
CAGAAGCAACGGATGCGGAAGAAGGCGCGGAGGAACCGTTTCAGCTGCAA
GAAACGGAAGAAGTAAACGACGACGATTTCCCCTCGTCCGTGTTGGACGA
AATGGTGGGCGTGACGGAGGAATCAGACTCGGAGTCGTCCTTCCGCATGT
CAATGGTGCAGGAGAGCACTGTGCCGGGTGGTGTATACGGGGGAGACCCC
GCGTTCGCGGGAGAAGAGGGTACCCTTCGCAACAACGATAACGATGTACC
GGCGGCGGCCCCGGTGGGGTGGTTTGGGTCGTACGGAAAACACGAGGAAA
TGACTTGA
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protein sequence of Ec-00_007840.1

>Ec-00_007840.1 ID=Ec-00_007840.1|Name=Ec-00_007840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=336bp
MEIGVWVALGYFTQAIGLETSDASVYCACLCSLSVVVVPLLDAVTGKGIK
RVTVAASFLALVGTGFLELGDAHASWNDLWCVAQAVGFGVAFTRIEFPGK
SLQLSIEQLISVAALTGIWCIFSAGGHLAGFSFVKDPQILAALSYTGLVT
TSLAIWLETVCLEKVPAAEMSVIFSTEPLWATLVSALLLKETMGPNALVG
AGVILLACLVAQSEQISELVGMGEGKGNDTLMDAEATDAEEGAEEPFQLQ
ETEEVNDDDFPSSVLDEMVGVTEESDSESSFRMSMVQESTVPGGVYGGDP
AFAGEEGTLRNNDNDVPAAAPVGWFGSYGKHEEMT*
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mRNA from alignment at chr_00:12579224..12581392-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007840.1 ID=Ec-00_007840.1|Name=Ec-00_007840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2169bp|location=Sequence derived from alignment at chr_00:12579224..12581392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAATAGGGGTGTGGGTTGCTCTCGGGTACTTCACTCAGGCCATCGG
CTTGGAAACCTCGGATGCCTCCGTCTACTGCGCCTGTCTCTGCAGCTTGT
CGGTGGTGAGAGCAGAGGTTCAACAGGACGTGATCCCTTTCTGGACCCAC
GAATTAGACAAAGACATCCCCTCCGCGGGAATGCTGCATAACTGCCGTGC
TGCCGCCGACACCAGCGGAGACAACGCGCCTGGCAGCAGCACAAGATAAA
AGAAATGGTACCACAGAAAACTTGCCATGCACTTGGGGACAATAATGTAG
AATTGTGCGGATCCGGTAATTGTTGAACTCGTATCCCTGCATGCATGCCG
TGAGTGGGGCGTACTCGGTATAACGGTTGAACCTGGGGTGTGAGCTGTGT
TTTTCCTCTCCCCCAACCCGACGTTAAATCATTCTTCCCCTCTTTGCCAA
TGGTGCTGGTCTCCATTCCGTATGGCTGTTGTGCGGCAGGTGGTCGTCCC
ATTGCTGGATGCTGTCACTGGCAAGGGCATCAAGCGCGTGACGGTGGCGG
CGTCTTTTCTTGCCCTCGTCGGCACCGGGTTTCTTGAGTTGGGAGACGCC
CACGCGTCTTGGAACGATCTGTGGTGTGTGGCTCAGGCCGTCGGGTTCGG
CGTGGCTTTCACACGGATTGAGGTTGGTGCCGTTTTTTGTTTTCGTGGAC
GCCATGTACCGCTGCTGTCTCCCTCTCGCTGTTTGTCGTTGCCCGTGTGG
AGGCCTACAGAGTAGCGTACAACGTTTCATAGAGGTACACGAGTTGTCGT
TCTTCACTCCGTGAATAGAAGCACCGTATGCATTCCTGATCATCTTCTTC
TTTGCATCCTTCGGTATTTAGCTGACCGGCCTATCGCGGACACATGACTC
TACTCCAAGCAAACTCATGCCCTAACGCTCTGCACGCGATCGTGTTGTTT
TTGCGTGTCCGTTCGGCAATACATGGAAAAGTTCCCGGGGAAGAGCTTAC
AGCTGTCCATCGAGCAGCTGATATCCGTCGCCGCACTGACAGGAATCTGG
TGTATCTTTTCAGCCGGCGGCCATCTTGCAGGTTTCAGGTGAGCCATCCG
CGATACACGTAGTACGTAAAGTTATCTCACCCTCGAGAGGAAAATATCAG
GAAGTTAGTGAAGACCTCTCGCTTGAAGTGATTTTCTAACGAGTCGTTAC
AAACATGCTACTTTCTCTACACCCAGAGAGAGATATCCCACAACCTATGA
AGCTGTGCCTCAATGATCGCTTCTCCTTCTGTGTTTGTTTTCCGCTCAGC
TTCGTCAAAGATCCTCAAATTTTGGCTGCTTTGAGCTACACCGGGCTGGT
GACCACCTCGCTCGCTATTTGGCTGGAGACTGTTTGCCTGGAGAAAGTAC
CTGCGGCTGAAATGAGGTGAAGCCCTGTTTTGCTTTGTCCTGACTGTAGC
CGGAAACTTTGATCAAACGGCCGAAGGACATGTTTTCGCTCGAGTTAACG
GACGGGCGCCTTCCGCACCATCTTTGCGAGAAAGCGTGTCAGAAATTGTT
GAACAAGACCGCCTTGGTGGCGTTTTTTCGTTGTTTCGAATGTTCAATCT
AACAACAAGTCAACCGGACCCCACATGCTCCTCCTGTTACCCCTGCGACG
ACATCCCAATGCTTCTCATCCAGCGTTATATTTAGCACGGAGCCTCTGTG
GGCCACGCTGGTATCGGCGCTGCTCTTGAAAGAGACCATGGGGCCGAATG
CCCTTGTTGGAGCGGGCGTAATTCTGTTGGCGTGCCTGGTTGCTCAAAGC
GAGCAAATATCGGAGCTAGTGGGCATGGGGGAGGGCAAGGGCAACGACAC
GCTCATGGACGCAGAAGCAACGGATGCGGAAGAAGGCGCGGAGGAACCGT
TTCAGCTGCAAGAAACGGAAGAAGTAAACGACGACGATTTCCCCTCGTCC
GTGTTGGACGAAATGGTGGGCGTGACGGAGGAATCAGACTCGGAGTCGTC
CTTCCGCATGTCAATGGTGCAGGAGAGCACTGTGCCGGGTGGTGTATACG
GGGGAGACCCCGCGTTCGCGGGAGAAGAGGGTACCCTTCGCAACAACGAT
AACGATGTACCGGCGGCGGCCCCGGTGGGGTGGTTTGGGTCGTACGGAAA
ACACGAGGAAATGACTTGA
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Coding sequence (CDS) from alignment at chr_00:12579224..12581392-

>Ec-00_007840.1 ID=Ec-00_007840.1|Name=Ec-00_007840.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1008bp|location=Sequence derived from alignment at chr_00:12579224..12581392- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAATAGGGGTGTGGGTTGCTCTCGGGTACTTCACTCAGGCCATCGG
CTTGGAAACCTCGGATGCCTCCGTCTACTGCGCCTGTCTCTGCAGCTTGT
CGGTGGTGGTCGTCCCATTGCTGGATGCTGTCACTGGCAAGGGCATCAAG
CGCGTGACGGTGGCGGCGTCTTTTCTTGCCCTCGTCGGCACCGGGTTTCT
TGAGTTGGGAGACGCCCACGCGTCTTGGAACGATCTGTGGTGTGTGGCTC
AGGCCGTCGGGTTCGGCGTGGCTTTCACACGGATTGAGTTCCCGGGGAAG
AGCTTACAGCTGTCCATCGAGCAGCTGATATCCGTCGCCGCACTGACAGG
AATCTGGTGTATCTTTTCAGCCGGCGGCCATCTTGCAGGTTTCAGCTTCG
TCAAAGATCCTCAAATTTTGGCTGCTTTGAGCTACACCGGGCTGGTGACC
ACCTCGCTCGCTATTTGGCTGGAGACTGTTTGCCTGGAGAAAGTACCTGC
GGCTGAAATGAGCGTTATATTTAGCACGGAGCCTCTGTGGGCCACGCTGG
TATCGGCGCTGCTCTTGAAAGAGACCATGGGGCCGAATGCCCTTGTTGGA
GCGGGCGTAATTCTGTTGGCGTGCCTGGTTGCTCAAAGCGAGCAAATATC
GGAGCTAGTGGGCATGGGGGAGGGCAAGGGCAACGACACGCTCATGGACG
CAGAAGCAACGGATGCGGAAGAAGGCGCGGAGGAACCGTTTCAGCTGCAA
GAAACGGAAGAAGTAAACGACGACGATTTCCCCTCGTCCGTGTTGGACGA
AATGGTGGGCGTGACGGAGGAATCAGACTCGGAGTCGTCCTTCCGCATGT
CAATGGTGCAGGAGAGCACTGTGCCGGGTGGTGTATACGGGGGAGACCCC
GCGTTCGCGGGAGAAGAGGGTACCCTTCGCAACAACGATAACGATGTACC
GGCGGCGGCCCCGGTGGGGTGGTTTGGGTCGTACGGAAAACACGAGGAAA
TGACTTGA
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Synonyms
The feature 'Ec-00_007840.1' has the following synonyms
Synonym
Esi0578_0001
Esi_0578_0001