Ec-00_007760.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007760.1
Unique NameEc-00_007760.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length209
Homology
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BLAST of Ec-00_007760.1 vs. uniprot
Match: D7G4P2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P2_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 8.750e-50
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 3 
Query:    3 AGGASGSHQKRVEGGGDSQQRHESAALPXXXXSVRPRGALFGSGGXXRSGTHAKAGXXXXXQNGENTGEXXXXXXXXXXKGKQRGASTASGSVATPATPPTGKRQRHGKAKRTGA 347
            AGGASGSHQKRVEGGGDSQQRHESAAL XXXX VRPRGALFGSGGXXRSGTHAKAGXXXX QNGENTGEXXXXXXXXXXKGKQRGASTASGSVATPATPPTGKRQRHGKAKRTGA
Sbjct:   13 AGGASGSHQKRVEGGGDSQQRHESAALXXXXXXVRPRGALFGSGGXXRSGTHAKAGXXXXSQNGENTGEXXXXXXXXXXKGKQRGASTASGSVATPATPPTGKRQRHGKAKRTGA 127
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BLAST of Ec-00_007760.1 vs. uniprot
Match: D7G1B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B9_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 2.240e-40
Identity = 115/160 (71.88%), Postives = 115/160 (71.88%), Query Frame = 3 
Query:    3 AGGASGSHQKRVEGGGDSQQRHESAALPXXXXSVRPRGALFGSGGXXRSGTHAKAGXXXXXQNGENTGEXXXXXXXXXXKGKQRGA-STASGSVATPATPP-TGKRQRHGKAKRTGA*AEDEDAEEEDPTSKPKKSKKTAKQRGEKASEDHRPSGAKPKG 476
            AGGASGS                   LP    SVR RGAL GSGG  RSGTHAKAG     QNGENT  XXXXXXXXXX        STASGSVATPATPP TGKRQRHGKAKRTGA  EDEDAEEEDPTSKPKKSKKTAKQRGEKASEDHRPSGAKPKG
Sbjct:  155 AGGASGSXXXXXXXXXXXXXXXXXXXLPGGGSSVRLRGALPGSGGGSRSGTHAKAGGDGSAQNGENTXXXXXXXXXXXXXXXXXXXXSTASGSVATPATPPPTGKRQRHGKAKRTGASVEDEDAEEEDPTSKPKKSKKTAKQRGEKASEDHRPSGAKPKG 314
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BLAST of Ec-00_007760.1 vs. uniprot
Match: A0A6H5JE76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE76_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.290e-8
Identity = 64/106 (60.38%), Postives = 66/106 (62.26%), Query Frame = 3 
Query:    9 GASGSHQKRVEGGGDSQQRHESAALPXXXXSVRPRGALFGSGGXXRSGTHAKAGXXXXXQNGENTGEXXXXXXXXXXKGKQRGASTASGSVATPATPPTGKRQRHG 326
            GASGS +K  EGGGDS QR ESAA P    SVR RG       XX         XXXXXQ G+NTGEXXXXXXXXXX        T SGSVATP T PTGKRQR G
Sbjct:   89 GASGSQEKGDEGGGDSGQRDESAAPPGGGSSVRSRGXXXXXXXXXXXXXXXXXXXXXXXQTGDNTGEXXXXXXXXXXXXXXX---TVSGSVATPTTLPTGKRQRQG 191
The following BLAST results are available for this feature:
BLAST of Ec-00_007760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4P2_ECTSI8.750e-5097.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1B9_ECTSI2.240e-4071.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE76_9PHAE7.290e-860.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12417732..12419602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length627
Hectar predicted targeting categorymitochondrion
Gene idEc-00_007760.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007760Ec-00_007760Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12417732..12419602 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007760.1.1Ec-00_007760.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12417732..12418114 +
Ec-00_007760.1.2Ec-00_007760.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12418647..12418718 +
Ec-00_007760.1.3Ec-00_007760.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12419026..12419106 +
Ec-00_007760.1.4Ec-00_007760.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12419512..12419602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007760.1CDS:Ec-00_007760.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12417732..12418114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007760.1Ec-00_007760.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12417732..12419602 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007760.1 ID=Ec-00_007760.1|Name=Ec-00_007760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=209bp
MLVVRRVRTRSGSKVGVIRNSVMNPPHFQAAGLQSGHVVPYLGAEAGVGV
VHMRRPEETAHPRTAKTLAKEAGKGKGKGGKGSNVVLRPRRAQLPHRPHL
RLASASGMGRPRGQGRKPRMRTPRKRTRRPNRRSRRRQPNNGERRPLRIT
VRPGRSRRGRKGRSHQKPDSKKKRALPTRRRPSPSPSRRGRRRRDSRKKL
RTPMTTTR*
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spliced messenger RNA

>Ec-00_007760.1 ID=Ec-00_007760.1|Name=Ec-00_007760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=627bp|location=Sequence derived from alignment at chr_00:12417732..12419602+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGTGGTGCGTCGGGTTCGCACCAGAAGCGGGTCGAAGGTGGGGGT
GATTCGCAACAGCGTCATGAATCCGCCGCACTTCCAGGCGGCGGGTCTTC
AGTCAGGCCACGTGGTGCCCTATTTGGGAGCGGAGGCGGGAGTCGGAGTG
GTACACATGCGAAGGCCGGAGGAGACGGCTCATCCCAGAACGGCGAAAAC
ACTGGCGAAGGAAGCGGGAAAGGGAAAGGGAAAGGGAGGAAAGGGAAGCA
ACGTGGTGCTTCGACCGCGTCGGGCTCAGTTGCCACACCGGCCACACCTC
CGACTGGCAAGCGCCAGCGGCATGGGAAGGCCAAGAGGACAGGGGCGTAA
GCCGAGGATGAGGACGCCGAGGAAGAGGACCCGACGTCCAAACCGAAGAA
GTCGAAGAAGACAGCCAAACAACGGGGAGAGAAGGCCTCTGAGGATCACC
GTCCGTCCGGGGCGAAGCCGAAGGGGAAGAAAAGGACGAAGTCACCAAAA
GCCCGACAGCAAGAAGAAGAGGGCTCTGCCGACACGTCGAAGGCCAAGTC
CAAGTCCAAGTCGAAGGGGAAGAAGAAGGCGCGACAGCAGGAAGAAGCTG
AGGACTCCGATGACAACGACGCGATAG
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protein sequence of Ec-00_007760.1

>Ec-00_007760.1 ID=Ec-00_007760.1|Name=Ec-00_007760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=209bp
MLVVRRVRTRSGSKVGVIRNSVMNPPHFQAAGLQSGHVVPYLGAEAGVGV
VHMRRPEETAHPRTAKTLAKEAGKGKGKGGKGSNVVLRPRRAQLPHRPHL
RLASASGMGRPRGQGRKPRMRTPRKRTRRPNRRSRRRQPNNGERRPLRIT
VRPGRSRRGRKGRSHQKPDSKKKRALPTRRRPSPSPSRRGRRRRDSRKKL
RTPMTTTR*
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mRNA from alignment at chr_00:12417732..12419602+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007760.1 ID=Ec-00_007760.1|Name=Ec-00_007760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1871bp|location=Sequence derived from alignment at chr_00:12417732..12419602+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGGTGGTGCGTCGGGTTCGCACCAGAAGCGGGTCGAAGGTGGGGGT
GATTCGCAACAGCGTCATGAATCCGCCGCACTTCCAGGCGGCGGGTCTTC
AGTCAGGCCACGTGGTGCCCTATTTGGGAGCGGAGGCGGGAGTCGGAGTG
GTACACATGCGAAGGCCGGAGGAGACGGCTCATCCCAGAACGGCGAAAAC
ACTGGCGAAGGAAGCGGGAAAGGGAAAGGGAAAGGGAGGAAAGGGAAGCA
ACGTGGTGCTTCGACCGCGTCGGGCTCAGTTGCCACACCGGCCACACCTC
CGACTGGCAAGCGCCAGCGGCATGGGAAGGCCAAGAGGACAGGGGCGTAA
GCCGAGGATGAGGACGCCGAGGAAGAGGACCCGGTACGTCGTGACTATAG
GATGCATACTGCTGTTGATCTGTATGGTTAGTGCTTGGTGCATGCTGTGC
TCTCCGTGGCGTAGGTTGGGCGCCTTCTTCTCTTTGTATTCGATCGAGAT
ACGGTGCTTGCGGAATATATGAGATTTGAACATTTTGTTTTGTCTCGAGC
TGCTCCCACTGTTGTATGGGTCCCTACAGCGGTATGCCTCGTCGAACAAT
TACATGTGCCTTCGTGCTCTTGTTGTATTATAGAATTTTTTGCACTGCTG
ATAAGACTGCTGTGAGATGGTAATTTGTTTGGAACAAGGAAGATTGTTCA
TCCTGTAGACTTGATGATGAGAGGCAGCGAGTACCCACTACTATACATTA
GTACGAAGAACGGAAGGTTGGCTTCCACCATCACCGTTGCTTGGCTACCT
CACACTCGCTGTTTCAGAGCCGATTGCGCTCGGGGTAATGCGCCTATCAC
CGCCCTCGTGACATTCATGGCGACACTACTGCTGTCGTACTCCGTATGTT
GTTGATCGCCATCAGACGTCCAAACCGAAGAAGTCGAAGAAGACAGCCAA
ACAACGGGGAGAGAAGGCCTCTGAGGATCACCGTCCGGTAGGTTGGACTC
TACAAACACCTTCGATTCTGTTTTTTTACAAATGTGCATCAGTGGTTACT
GTAGGTCAATGGTTGCCTGCATTATTGACAGGCTACATGGTCTAAATGTA
TTGGTGCAGGCGTGGAGTTCAAATATCAAGCTCAGGAATTTCCTGCTCAA
TCGCGCAATATACACCCAGCAATGTTTAAGTGGCAGATCAAGGATATCGT
CTAGAGGCTTACCAATTGTGGTGGTCCTCTGTGCACTTGGTACTATTTGA
TTCCTTCCATGATTTCCTTGCGATCTTATTTTCCTTTTCGACAGTCCGGG
GCGAAGCCGAAGGGGAAGAAAAGGACGAAGTCACCAAAAGCCCGACAGCA
AGAAGAAGAGGGCTCTGCCGACACGGTGGGTTGGGGTTAGGCTGATACAA
TTCCTGTTTCAATTTGCATTATACCGCGCATATCGTGTCAAGGGGGAACA
TCTGCGAGCCTCTCACTTAATTGCGAAAGCTATGCCACACAAGTTGGGTG
ACGATAGACTGTGCTGCTGCCGCGGCGCATCGTTTATGCTTTAATAACCC
TCTTTGGAGTCTTAAGACGCTCCGATCATTAGTTGATTATTTGCAAAAAC
TAGCGTGGTACAAACATCCGTCGAGTTTCCGCCACGTACCCCTCCAAAAC
GGGTGCTGGACAGTCCATACGAACGTGTACCCGGGCTGCTGGCGTTATGT
TGTGATCAGCCTCTGATTCGAGTCCTCTTGGTGAATCCTGTTGTAATGTC
CTACACCATGTTACTGGACATGAGCGACAGTCGAAGGCCAAGTCCAAGTC
CAAGTCGAAGGGGAAGAAGAAGGCGCGACAGCAGGAAGAAGCTGAGGACT
CCGATGACAACGACGCGATAG
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Coding sequence (CDS) from alignment at chr_00:12417732..12419602+

>Ec-00_007760.1 ID=Ec-00_007760.1|Name=Ec-00_007760.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=627bp|location=Sequence derived from alignment at chr_00:12417732..12419602+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGGTGGTGCGTCGGGTTCGCACCAGAAGCGGGTCGAAGGTGGGGGT
GATTCGCAACAGCGTCATGAATCCGCCGCACTTCCAGGCGGCGGGTCTTC
AGTCAGGCCACGTGGTGCCCTATTTGGGAGCGGAGGCGGGAGTCGGAGTG
GTACACATGCGAAGGCCGGAGGAGACGGCTCATCCCAGAACGGCGAAAAC
ACTGGCGAAGGAAGCGGGAAAGGGAAAGGGAAAGGGAGGAAAGGGAAGCA
ACGTGGTGCTTCGACCGCGTCGGGCTCAGTTGCCACACCGGCCACACCTC
CGACTGGCAAGCGCCAGCGGCATGGGAAGGCCAAGAGGACAGGGGCGTAA
GCCGAGGATGAGGACGCCGAGGAAGAGGACCCGACGTCCAAACCGAAGAA
GTCGAAGAAGACAGCCAAACAACGGGGAGAGAAGGCCTCTGAGGATCACC
GTCCGTCCGGGGCGAAGCCGAAGGGGAAGAAAAGGACGAAGTCACCAAAA
GCCCGACAGCAAGAAGAAGAGGGCTCTGCCGACACGTCGAAGGCCAAGTC
CAAGTCCAAGTCGAAGGGGAAGAAGAAGGCGCGACAGCAGGAAGAAGCTG
AGGACTCCGATGACAACGACGCGATAG
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Synonyms
The feature 'Ec-00_007760.1' has the following synonyms
Synonym
Esi0574_0003
Esi_0574_0003