Ec-00_007710.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007710.1
Unique NameEc-00_007710.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length145
Homology
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BLAST of Ec-00_007710.1 vs. uniprot
Match: A0A6H5KZ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ31_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.030e-24
Identity = 249/252 (98.81%), Postives = 249/252 (98.81%), Query Frame = 3 
Query:   15 AGGQPQELVRVCQHLGCRRGPCYGWEGEKRATFCAAHGLPGQVNVVSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSVDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEGHRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNKRDGYSNPRYFARAE 770
            AGGQPQELVRVCQHLGCRRGPCYGWEGEKRATFCAAHGLPGQVNVVSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSVDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEGHRA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX T KRDGYSNPRYFARAE
Sbjct:  412 AGGQPQELVRVCQHLGCRRGPCYGWEGEKRATFCAAHGLPGQVNVVSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSVDGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEGHRATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDRRASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTIKRDGYSNPRYFARAE 663
The following BLAST results are available for this feature:
BLAST of Ec-00_007710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZ31_9PHAE1.030e-2498.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:12329728..12332376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length2221
Hectar predicted targeting categoryother localisation
Gene idEc-00_007710.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007710Ec-00_007710Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 12329728..12332376 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007710.1.1Ec-00_007710.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12329728..12330320 +
Ec-00_007710.1.2Ec-00_007710.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 12330749..12332376 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0077105UTR:Ec-00_007710.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 12329728..12330066 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007710.1CDS:Ec-00_007710.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 12330067..12330320 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0077103UTR:Ec-00_007710.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 12330930..12332376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007710.1Ec-00_007710.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 12330067..12330929 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007710.1 ID=Ec-00_007710.1|Name=Ec-00_007710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=145bp
MFCAGHRQYGMVNVVSPQCGEVNCTRGPSYGFEGHRAAFCARHKQEGQVN
VVSPRCKEEGCTRGPSYGHEGDRRASYCAQHKRPGMVNVVSRKCSIPGCG
KGPSYGRDGDRKASYCAVHKREGDVNLTNKRDGYSNPRYFARAE*
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spliced messenger RNA

>Ec-00_007710.1 ID=Ec-00_007710.1|Name=Ec-00_007710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2221bp|location=Sequence derived from alignment at chr_00:12329728..12332376+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CCGCCGGAGCGGCGGGCGGGCGGGCAGCCGCAAGAGCTGGTGCGGGTGTG
CCAGCACCTGGGCTGCCGCCGGGGGCCGTGCTACGGGTGGGAGGGGGAGA
AACGCGCCACGTTCTGCGCGGCCCACGGCCTTCCGGGCCAGGTGAACGTG
GTGTCGCCGCGGTGCGCCCACGAGGGCTGCCGCCGGGGGCCAAGCTACGG
GCAGCCCGGCGTCAAGAAGCCGGTGTTTTGCTCCGGGCACCGCCTACCGG
GCCAGGTTAACGTGGTGTCCCCCCGGTGTCAGCACCCGGGGTGCTCGCGG
GGGCCGTCGTACGGGCACAGCGTGGACGGGCGGAAGCCCATGTTCTGCGC
CGGGCATCGGCAGTACGGGATGGTGAACGTGGTGTCTCCCCAGTGCGGGG
AGGTGAACTGCACGAGGGGCCCGTCGTACGGGTTCGAGGGCCACAGGGCG
GCGTTCTGCGCCAGGCACAAGCAGGAGGGGCAGGTGAACGTGGTCTCGCC
GCGGTGCAAGGAGGAGGGCTGTACCCGCGGCCCGAGCTACGGGCACGAAG
GGGACCGCCGGGCGTCCTACTGCGCCCAGCACAAACGACCCGGCATGGTA
AACGTTGTCAGCCGGAAGTGCTCCATCCCCGGCTGCGGCAAGGGGCCAAG
CTACGGTAGGGACGGAGACCGGAAAGCCAGCTACTGCGCCGTGCACAAGC
GGGAGGGGGACGTCAACCTCACAAACAAGAGAGACGGGTACAGCAACCCG
CGTTACTTCGCTCGGGCCGAGTAATCGGTTGGATGGAATCGCCCGTAAGG
CGGGGGGGGGGAGCAAGGCGAGAGTGACGAAGGCGACGAGTCGTTCTACA
CGTGGTAGTTTTGATGATCAAATGGGATCGCTGCATGCGAAGTATGTTTT
GATTCGTTTTTTTCCTTACTTGGAGGTATCGTGCGTTTTCATTGTTACCG
GGCTTGGTGTGCAGTAGAGGCGTCGTTTGCATGCGGGTTGGTGGTTGGGG
TGGGTGGTGCGTGCAGGACCTTTGTACCAGAGCTGCGCTCACTCACATTG
CCTTCACAACCTGCGGCGTTGTGGGCGGATGGGGACGCACGTTTTTGGTA
AACGAATTCAAATACATTTACCGATTTCCTGTAGGAAGCGCCGTTGCGAT
CGCTCGGCGTACGTGTGTAGAGCTATCATTGATCAGCCCACAGCGACAAA
GCATGCAGGGTATCTAATACTCCGTCGGTTACGCGACTTTATCTGGTGAG
CCCTGAGTGATGGTTACTTGTTGTTTTTGCCCGTACATCGTATGCTGGTG
TTTTTTTTCTCTTCACGATAACACGCCCACACAGTCCGAAGCGCTACAGT
ATTCTCAGCGTCTGGGAATCCCAAGGGGGGCGTTGTCTTCTGTCGAGTCA
TCTCTCGGGTGTACGCCGTGCGTGTGTCGTGCCTATCATAGTAGTGGACG
TTGCATTTGCAAAGAACCGCATGAGCGGCAGCAGCATCTTTAGTGACGAT
TGATTGGCGGCGTACTTGGAGACCTTTTTGTACCACATGGCTTCTTTTTC
GATTGATCAGTCGGCGTGGCGTGTCGTAAAGGAATTCACGAACGCAAACA
GAGGCCGGGGTTTGCCGTCTTTTCCATAGGCGTGCATATAGCAGCTCAGT
GTCGTGCGGTAGCACGTGCAGCTGTAGCGCAACACACATATATATGCCAC
CAAGGCGCTTTGCTTTCCAGTAGATGGGTGTGATGGTGAACGGTGTAGTA
GGCCGTCCGTTGTTTGTGCGTTCACACAGTGGTGGACTTTCCGCGCTGTC
TGAAGCAGCATTGTACATACCAACAGTATCTTACGGTAGACGGGTCCAGT
GTTGTCGGAGAAGAAGCAAACGTTGCGTAGACGCTTAAAAGAAGAGGGGT
CGTCGGTGTTCATTTTGGTTCTTCTTATTCTTATGGGGAGGCATTTGGAC
TAACTGTTGTGTACAATACCAGTGTTTTTATGGATGAAATCAGCCTCCTA
ATGGTCGACGGGGCAAATGAAAGCAGCGAAAGTCAAACTTCCAGGTTGTG
CCGCCTGTGAAGCACCTTCCCACGTGCGCTCACCGTTATCGTACAGCAGG
TCAGCTGAAACGTTGGTAACGAATGCATGGATGCACGAAAACGCCGAACA
ATACGATCTAGAGAGCGGACGGAAAGACCTTACGGGACTGATGAACCGGC
TGAATTCCATCGGTTTCGGCA
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protein sequence of Ec-00_007710.1

>Ec-00_007710.1 ID=Ec-00_007710.1|Name=Ec-00_007710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=145bp
MFCAGHRQYGMVNVVSPQCGEVNCTRGPSYGFEGHRAAFCARHKQEGQVN
VVSPRCKEEGCTRGPSYGHEGDRRASYCAQHKRPGMVNVVSRKCSIPGCG
KGPSYGRDGDRKASYCAVHKREGDVNLTNKRDGYSNPRYFARAE*
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mRNA from alignment at chr_00:12329728..12332376+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007710.1 ID=Ec-00_007710.1|Name=Ec-00_007710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2649bp|location=Sequence derived from alignment at chr_00:12329728..12332376+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CCGCCGGAGCGGCGGGCGGGCGGGCAGCCGCAAGAGCTGGTGCGGGTGTG
CCAGCACCTGGGCTGCCGCCGGGGGCCGTGCTACGGGTGGGAGGGGGAGA
AACGCGCCACGTTCTGCGCGGCCCACGGCCTTCCGGGCCAGGTGAACGTG
GTGTCGCCGCGGTGCGCCCACGAGGGCTGCCGCCGGGGGCCAAGCTACGG
GCAGCCCGGCGTCAAGAAGCCGGTGTTTTGCTCCGGGCACCGCCTACCGG
GCCAGGTTAACGTGGTGTCCCCCCGGTGTCAGCACCCGGGGTGCTCGCGG
GGGCCGTCGTACGGGCACAGCGTGGACGGGCGGAAGCCCATGTTCTGCGC
CGGGCATCGGCAGTACGGGATGGTGAACGTGGTGTCTCCCCAGTGCGGGG
AGGTGAACTGCACGAGGGGCCCGTCGTACGGGTTCGAGGGCCACAGGGCG
GCGTTCTGCGCCAGGCACAAGCAGGAGGGGCAGGTGAACGTGGTCTCGCC
GCGGTGCAAGGAGGAGGGCTGTACCCGCGGCCCGAGCTACGGGCACGAAG
GGGACCGCCGGGCGTCCTACTGCGCCCAGCACAAACGACCCGGGTGAGGA
AATTGTTTTTTGTTTGTTGCTGCTGTTGCCCGTCACTTGTACGTGAGCTG
TTTACTCCTGCGCGACTATGAGATGATGTCAGCACTCTAAGCTATGCTGT
ATTCATGTAATTAAGAACGCCACTTGTTCGAAGTTGTGTTGTTCCAACCT
TTAAGTCTCGTGAAGTGATCACTGGTCTCGAAGAAGGTGGGTTCGTTTAA
CGATGCATTGTTGAAGGTTTACTCGTTACAACAGAGTTTTCTGTTTGTGT
GTGGCTTTGTCTCCCGAGTTATCTGTCTCCCCGAGCGAATCGGTTTGCAA
GCCGGGGGTTCAGCAGGATGATGAAACAGGACGACTGCCGCCCGCTCTTC
TACGGCCCCTCTCCGTCTAACGTATCGCTTCACACCCGCCCGAATGCACG
GCCTGTTGTCAAATTCCGAAGCATGGTAAACGTTGTCAGCCGGAAGTGCT
CCATCCCCGGCTGCGGCAAGGGGCCAAGCTACGGTAGGGACGGAGACCGG
AAAGCCAGCTACTGCGCCGTGCACAAGCGGGAGGGGGACGTCAACCTCAC
AAACAAGAGAGACGGGTACAGCAACCCGCGTTACTTCGCTCGGGCCGAGT
AATCGGTTGGATGGAATCGCCCGTAAGGCGGGGGGGGGGAGCAAGGCGAG
AGTGACGAAGGCGACGAGTCGTTCTACACGTGGTAGTTTTGATGATCAAA
TGGGATCGCTGCATGCGAAGTATGTTTTGATTCGTTTTTTTCCTTACTTG
GAGGTATCGTGCGTTTTCATTGTTACCGGGCTTGGTGTGCAGTAGAGGCG
TCGTTTGCATGCGGGTTGGTGGTTGGGGTGGGTGGTGCGTGCAGGACCTT
TGTACCAGAGCTGCGCTCACTCACATTGCCTTCACAACCTGCGGCGTTGT
GGGCGGATGGGGACGCACGTTTTTGGTAAACGAATTCAAATACATTTACC
GATTTCCTGTAGGAAGCGCCGTTGCGATCGCTCGGCGTACGTGTGTAGAG
CTATCATTGATCAGCCCACAGCGACAAAGCATGCAGGGTATCTAATACTC
CGTCGGTTACGCGACTTTATCTGGTGAGCCCTGAGTGATGGTTACTTGTT
GTTTTTGCCCGTACATCGTATGCTGGTGTTTTTTTTCTCTTCACGATAAC
ACGCCCACACAGTCCGAAGCGCTACAGTATTCTCAGCGTCTGGGAATCCC
AAGGGGGGCGTTGTCTTCTGTCGAGTCATCTCTCGGGTGTACGCCGTGCG
TGTGTCGTGCCTATCATAGTAGTGGACGTTGCATTTGCAAAGAACCGCAT
GAGCGGCAGCAGCATCTTTAGTGACGATTGATTGGCGGCGTACTTGGAGA
CCTTTTTGTACCACATGGCTTCTTTTTCGATTGATCAGTCGGCGTGGCGT
GTCGTAAAGGAATTCACGAACGCAAACAGAGGCCGGGGTTTGCCGTCTTT
TCCATAGGCGTGCATATAGCAGCTCAGTGTCGTGCGGTAGCACGTGCAGC
TGTAGCGCAACACACATATATATGCCACCAAGGCGCTTTGCTTTCCAGTA
GATGGGTGTGATGGTGAACGGTGTAGTAGGCCGTCCGTTGTTTGTGCGTT
CACACAGTGGTGGACTTTCCGCGCTGTCTGAAGCAGCATTGTACATACCA
ACAGTATCTTACGGTAGACGGGTCCAGTGTTGTCGGAGAAGAAGCAAACG
TTGCGTAGACGCTTAAAAGAAGAGGGGTCGTCGGTGTTCATTTTGGTTCT
TCTTATTCTTATGGGGAGGCATTTGGACTAACTGTTGTGTACAATACCAG
TGTTTTTATGGATGAAATCAGCCTCCTAATGGTCGACGGGGCAAATGAAA
GCAGCGAAAGTCAAACTTCCAGGTTGTGCCGCCTGTGAAGCACCTTCCCA
CGTGCGCTCACCGTTATCGTACAGCAGGTCAGCTGAAACGTTGGTAACGA
ATGCATGGATGCACGAAAACGCCGAACAATACGATCTAGAGAGCGGACGG
AAAGACCTTACGGGACTGATGAACCGGCTGAATTCCATCGGTTTCGGCA
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Coding sequence (CDS) from alignment at chr_00:12329728..12332376+

>Ec-00_007710.1 ID=Ec-00_007710.1|Name=Ec-00_007710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=435bp|location=Sequence derived from alignment at chr_00:12329728..12332376+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTTCTGCGCCGGGCATCGGCAGTACGGGATGGTGAACGTGGTGTCTCC
CCAGTGCGGGGAGGTGAACTGCACGAGGGGCCCGTCGTACGGGTTCGAGG
GCCACAGGGCGGCGTTCTGCGCCAGGCACAAGCAGGAGGGGCAGGTGAAC
GTGGTCTCGCCGCGGTGCAAGGAGGAGGGCTGTACCCGCGGCCCGAGCTA
CGGGCACGAAGGGGACCGCCGGGCGTCCTACTGCGCCCAGCACAAACGAC
CCGGCATGGTAAACGTTGTCAGCCGGAAGTGCTCCATCCCCGGCTGCGGC
AAGGGGCCAAGCTACGGTAGGGACGGAGACCGGAAAGCCAGCTACTGCGC
CGTGCACAAGCGGGAGGGGGACGTCAACCTCACAAACAAGAGAGACGGGT
ACAGCAACCCGCGTTACTTCGCTCGGGCCGAGTAA
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Synonyms
The feature 'Ec-00_007710.1' has the following synonyms
Synonym
Esi570_0011
Esi_570_0011