Ec-00_007160.4 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007160.4
Unique NameEc-00_007160.4
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length176
Homology
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BLAST of Ec-00_007160.4 vs. uniprot
Match: A0A6H5L6M1_9PHAE (UBA domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M1_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.200e-21
Identity = 116/132 (87.88%), Postives = 119/132 (90.15%), Query Frame = 1 
Query:  136 AGAGLLAAHRPQSDSAGEHSEDRSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HGGHEAEMGGQGVDGEEDVMDEEEXXXXXXXXXXXXXXXXXXXXXXXXLDDFDGGGDGDDDGHRDEEDMYVLG 525
            AGAGL+A HRPQSDS GEHSEDRSD XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  HGGHEAEMGGQGVD EEDVMDEE+ XXXXXXXXXXXXXXXXXXXX     DFDGG DGDDDGHRD+EDMYVLG
Sbjct: 1946 AGAGLMATHRPQSDSGGEHSEDRSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHGGHEAEMGGQGVDREEDVMDEEDDXXXXXXXXXXXXXXXXXXXX-----DFDGGEDGDDDGHRDDEDMYVLG 2072
The following BLAST results are available for this feature:
BLAST of Ec-00_007160.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6M1_9PHAE1.200e-2187.88UBA domain-containing protein (Fragment) n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11281563..11282371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length553
Hectar predicted targeting categoryother localisation
Gene idEc-00_007160.4
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007160Ec-00_007160Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11250499..11282371 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007160.4.2Ec-00_007160.4.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11281563..11281756 -
Ec-00_007160.4.1Ec-00_007160.4.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11282013..11282371 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0071603UTR:Ec-00_007160.4Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 11281563..11281586 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007160.4CDS:Ec-00_007160.4Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11281587..11281756 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0071605UTR:Ec-00_007160.4Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 11282371..11282371 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007160.4Ec-00_007160.4Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11281587..11282370 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007160.4 ID=Ec-00_007160.4|Name=Ec-00_007160.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=176bp
MPCTRFGEPKHRASQHDDEGGPPPLMQGSSSDDNGMAAHGGAAGGAGAGL
LAAHRPQSDSAGEHSEDRSDSEDDGDSDDDDSDGDSDDEEEDDSDDGDDD
DGHGGHEAEMGGQGVDGEEDVMDEEEEEEEEEEDDDEEGDEEELDEEEID
LDDFDGGGDGDDDGHRDEEDMYVLG*
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spliced messenger RNA

>Ec-00_007160.4 ID=Ec-00_007160.4|Name=Ec-00_007160.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=553bp|location=Sequence derived from alignment at chr_00:11281563..11282371- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
TATGCCGTGCACACGCTTTGGTGAACCGAAACACCGGGCCTCACAGCACG
ATGACGAGGGCGGCCCGCCTCCTCTCATGCAGGGCTCCTCTTCTGACGAC
AACGGGATGGCTGCGCACGGCGGCGCCGCCGGTGGCGCCGGCGCCGGCCT
ATTGGCCGCCCACCGGCCGCAGTCCGACTCCGCGGGAGAACATTCCGAGG
ACCGTTCCGACTCGGAGGATGATGGCGACTCGGATGACGACGATTCAGAC
GGGGATTCGGATGACGAGGAGGAGGATGATTCCGACGATGGCGATGATGA
TGACGGGCATGGCGGGCACGAGGCAGAGATGGGCGGGCAGGGGGTGGACG
GGGAAGAAGACGTGATGGACGAGGAGGAGGAGGAGGAGGAAGAGGAGGAA
GACGACGACGAGGAGGGGGACGAGGAAGAGCTGGACGAAGAGGAGATCGA
TCTGGACGACTTCGACGGCGGCGGGGACGGCGATGACGACGGGCACCGAG
ACGAGGAGGACATGTACGTCCTAGGGTGAGTCCGACCCGACCTGGCGGGA
GAG
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protein sequence of Ec-00_007160.4

>Ec-00_007160.4 ID=Ec-00_007160.4|Name=Ec-00_007160.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=176bp
MPCTRFGEPKHRASQHDDEGGPPPLMQGSSSDDNGMAAHGGAAGGAGAGL
LAAHRPQSDSAGEHSEDRSDSEDDGDSDDDDSDGDSDDEEEDDSDDGDDD
DGHGGHEAEMGGQGVDGEEDVMDEEEEEEEEEEDDDEEGDEEELDEEEID
LDDFDGGGDGDDDGHRDEEDMYVLG*
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mRNA from alignment at chr_00:11281563..11282371-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007160.4 ID=Ec-00_007160.4|Name=Ec-00_007160.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=809bp|location=Sequence derived from alignment at chr_00:11281563..11282371- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
TATGCCGTGCACACGCTTTGGTGAACCGAAACACCGGGCCTCACAGCACG
ATGACGAGGGCGGCCCGCCTCCTCTCATGCAGGGCTCCTCTTCTGACGAC
AACGGGATGGCTGCGCACGGCGGCGCCGCCGGTGGCGCCGGCGCCGGCCT
ATTGGCCGCCCACCGGCCGCAGTCCGACTCCGCGGGAGAACATTCCGAGG
ACCGTTCCGACTCGGAGGATGATGGCGACTCGGATGACGACGATTCAGAC
GGGGATTCGGATGACGAGGAGGAGGATGATTCCGACGATGGCGATGATGA
TGACGGGCATGGCGGGCACGAGGCAGAGATGGGCGGGCAGGGGGTGGACG
GGGAAGAAGGTGTGCTAACTAGCGGCCTTGTTTTTTTTTTGCCGTAGTGG
TGTGGTTCCACACCGCGCGTCTGGATGTGCTAGGGGGCGGGGGCGGGGGG
GGGGCGGGCGTACCCATGCTTGGCATATCTTAGCCCGTTGTGAAGTAGTT
GTTTTGTTTCCCTGCTGCACACTTGTTGAGCTGGTGTGTGTGTGGTCATG
CTCATGCCTTGTTACTCTTGGTATCGTTGTTCCTCCGACACCGTTGCAAT
TCCCTCCGCGAGAAGACGTGATGGACGAGGAGGAGGAGGAGGAGGAAGAG
GAGGAAGACGACGACGAGGAGGGGGACGAGGAAGAGCTGGACGAAGAGGA
GATCGATCTGGACGACTTCGACGGCGGCGGGGACGGCGATGACGACGGGC
ACCGAGACGAGGAGGACATGTACGTCCTAGGGTGAGTCCGACCCGACCTG
GCGGGAGAG
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Coding sequence (CDS) from alignment at chr_00:11281563..11282371-

>Ec-00_007160.4 ID=Ec-00_007160.4|Name=Ec-00_007160.4|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=528bp|location=Sequence derived from alignment at chr_00:11281563..11282371- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGTGCACACGCTTTGGTGAACCGAAACACCGGGCCTCACAGCACGA
TGACGAGGGCGGCCCGCCTCCTCTCATGCAGGGCTCCTCTTCTGACGACA
ACGGGATGGCTGCGCACGGCGGCGCCGCCGGTGGCGCCGGCGCCGGCCTA
TTGGCCGCCCACCGGCCGCAGTCCGACTCCGCGGGAGAACATTCCGAGGA
CCGTTCCGACTCGGAGGATGATGGCGACTCGGATGACGACGATTCAGACG
GGGATTCGGATGACGAGGAGGAGGATGATTCCGACGATGGCGATGATGAT
GACGGGCATGGCGGGCACGAGGCAGAGATGGGCGGGCAGGGGGTGGACGG
GGAAGAAGACGTGATGGACGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAG
ACGACGACGAGGAGGGGGACGAGGAAGAGCTGGACGAAGAGGAGATCGAT
CTGGACGACTTCGACGGCGGCGGGGACGGCGATGACGACGGGCACCGAGA
CGAGGAGGACATGTACGTCCTAGGGTGA
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Synonyms
The feature 'Ec-00_007160.4' has the following synonyms
Synonym
Esi0534_0007
Esi_0534_0007