Ec-00_007120.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007120.1
Unique NameEc-00_007120.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length110
Homology
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BLAST of Ec-00_007120.1 vs. uniprot
Match: D8LCF8_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCF8_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 1.180e-67
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGVVSCK 327
            MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGVVSCK
Sbjct:  285 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGVVSCK 393
[Close]
BLAST of Ec-00_007120.1 vs. uniprot
Match: D8LFI2_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI2_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 4.420e-66
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGVVSCK 327
            MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGVVSCK
Sbjct:  436 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMVGLTGVVSCK 544
[Close]
BLAST of Ec-00_007120.1 vs. uniprot
Match: A0A7S3XKM5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKM5_HETAK)

HSP 1 Score: 138 bits (348), Expect = 1.820e-38
Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPP 267
            +Y  L APLL V+ERLDVLLH+KWTV EFDC LTRDI ELVDREADLL+RGRGE +L  LR+R+ NLFLRF ETP+FNPEA+RF+++PP
Sbjct:  118 LYRGLTAPLLGVDERLDVLLHVKWTVKEFDCPLTRDIVELVDREADLLNRGRGEKALEGLRRRVANLFLRFVETPEFNPEAARFLKIPP 206
[Close]
BLAST of Ec-00_007120.1 vs. uniprot
Match: A0A7S0PVG3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0PVG3_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 5.090e-36
Identity = 61/88 (69.32%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVP 264
            +Y  L  PLLSV+ERLDVLLH+KWTV EFDC LTRDI EL+DREAD+L+RGR ++SL  LR+R+ NLFL+F ETP+FNPEA+RF +VP
Sbjct:   65 LYNGLRLPLLSVDERLDVLLHVKWTVKEFDCNLTRDIVELIDREADMLNRGRSDSSLGGLRKRLANLFLQFVETPEFNPEAARFQKVP 152
[Close]
BLAST of Ec-00_007120.1 vs. uniprot
Match: A0A7S2UXW3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXW3_9STRA)

HSP 1 Score: 129 bits (323), Expect = 9.660e-36
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVP 264
            +YE L   L+S +ERLD+LLH+KWTV EF+C LTRDI EL+DREADLL+RGR E SL  LRQRI NLFLRF ETP+FNPEA+RF+++P
Sbjct:   49 LYEGLSNSLVSTDERLDILLHVKWTVKEFECPLTRDIVELIDREADLLNRGRSEKSLEGLRQRITNLFLRFIETPEFNPEATRFLKMP 136
[Close]
BLAST of Ec-00_007120.1 vs. uniprot
Match: A0A7S2J4U9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2J4U9_9EUKA)

HSP 1 Score: 130 bits (326), Expect = 2.020e-33
Identity = 60/88 (68.18%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVP 264
            +Y  L  PLL+++ERLDVLLH+KWTV EFDC LTRD+ EL+DREAD+L+RGR EASL  LR+R+ NLFL+F ETP+FNPEA+RF +VP
Sbjct:  386 LYNGLRLPLLTIDERLDVLLHVKWTVKEFDCNLTRDVVELIDREADMLNRGRSEASLTGLRKRLANLFLQFIETPEFNPEAARFQKVP 473
[Close]
BLAST of Ec-00_007120.1 vs. uniprot
Match: A0A8J2EPI9_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2EPI9_9DINO)

HSP 1 Score: 130 bits (327), Expect = 2.490e-33
Identity = 61/88 (69.32%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVP 264
            +Y  L  PLLS++ERLDVLLH+KWTV EFDC LTRDI +L+DREAD+L+RGR E+S   LR+R+ NLFL+F ETPDFNPEASRF +VP
Sbjct:  431 LYNGLNLPLLSIDERLDVLLHVKWTVKEFDCNLTRDIVDLIDREADMLNRGRSESSFAGLRKRLANLFLQFVETPDFNPEASRFQQVP 518
[Close]
BLAST of Ec-00_007120.1 vs. uniprot
Match: A0A8J8SW50_HALGN (Uncharacterized protein n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8SW50_HALGN)

HSP 1 Score: 128 bits (321), Expect = 5.190e-33
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVP 264
            +Y  L  P LS +ERLDVLLH KWTV EFDC LTR+I +L+DREAD+L+RGRGEASL  LR+R+ NLFL+F ETP+FNPEA+RF +VP
Sbjct:  330 LYNGLRLPFLSTDERLDVLLHTKWTVKEFDCNLTREIVDLIDREADMLNRGRGEASLEGLRKRLSNLFLQFIETPEFNPEAARFQKVP 417
[Close]
BLAST of Ec-00_007120.1 vs. uniprot
Match: A0A7S1GAU3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAU3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 6.140e-33
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVP------PKYGKLTDEGM-VGLTG 312
            +Y  L  P+L+V+ERLDVLLH+KWTV EFDC LTR++ +L+DREADLL+RGR E SL  LR+RI NLFL+F ETP+FNPEA+RF +VP      P    +TD  + +G TG
Sbjct:  266 LYSGLNLPMLTVDERLDVLLHVKWTVKEFDCLLTREVVDLIDREADLLNRGRSEKSLEGLRRRISNLFLQFIETPEFNPEAARFQKVPRDLSTRPSVRPVTDSMIRLGKTG 376
[Close]
BLAST of Ec-00_007120.1 vs. uniprot
Match: A0A8J1YVP8_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1YVP8_9DINO)

HSP 1 Score: 128 bits (321), Expect = 1.420e-32
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSRGRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVP 264
            +Y  L  PLLS++ERLDVLLH+KWTV EFDC LTRDI +L+DREADLL+RGR E+S   LR+R+ NLFL+F ETP+FNPEA+RF  VP
Sbjct:  406 LYNGLNLPLLSIDERLDVLLHVKWTVKEFDCNLTRDIVDLIDREADLLNRGRSESSFTALRKRLSNLFLQFIETPEFNPEAARFQHVP 493
The following BLAST results are available for this feature:
BLAST of Ec-00_007120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCF8_ECTSI1.180e-67100.00Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
D8LFI2_ECTSI4.420e-66100.00MFS domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A7S3XKM5_HETAK1.820e-3873.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0PVG3_9EUKA5.090e-3669.32Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2UXW3_9STRA9.660e-3669.32Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2J4U9_9EUKA2.020e-3368.18Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A8J2EPI9_9DINO2.490e-3369.32Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A8J8SW50_HALGN5.190e-3368.18Uncharacterized protein n=2 Tax=Halteria grandinel... [more]
A0A7S1GAU3_9STRA6.140e-3358.56Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A8J1YVP8_9DINO1.420e-3268.18Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11198335..11198664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue8.3e-54
Seed eggNOG ortholog2880.D8LCF8
Preferred nameIQUB
Length330
Hectar predicted targeting categoryother localisation
Gene idEc-00_007120.1
GOsGO:0001669,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005929,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030141,GO:0031410,GO:0031514,GO:0031982,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0097223,GO:0097708,GO:0099503,GO:0120025,GO:0120031,GO:0120036
EggNOG free text desc.smoothened signaling pathway
EggNOG OGs28JBT@1,2QRQT@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007120Ec-00_007120Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11198335..11198664 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007120.1.1Ec-00_007120.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11198335..11198664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007120.1CDS:Ec-00_007120.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11198335..11198664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007120.1Ec-00_007120.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11198335..11198664 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007120.1 ID=Ec-00_007120.1|Name=Ec-00_007120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=110bp
MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSR
GRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMV
GLTGVVSCK*
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spliced messenger RNA

>Ec-00_007120.1 ID=Ec-00_007120.1|Name=Ec-00_007120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=330bp|location=Sequence derived from alignment at chr_00:11198335..11198664- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGAAGCCCTCGAGGCCCCACTCCTGAGCGTCGAAGAGCGCCTAGA
CGTCCTCTTGCACCTAAAGTGGACCGTCAGCGAGTTCGACTGCCGGCTGA
CCCGGGACATCGCGGAGCTGGTCGACAGGGAGGCGGACCTGTTGAGCCGG
GGGCGGGGGGAGGCCAGCCTGCGGCCGCTCCGGCAGCGCATCCGCAACCT
GTTCTTGCGGTTCGCGGAGACCCCGGACTTCAACCCGGAGGCCTCGCGGT
TCATTCGAGTGCCGCCCAAGTACGGGAAGCTTACGGACGAGGGGATGGTG
GGCTTGACAGGGGTGGTCTCATGCAAGTGA
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protein sequence of Ec-00_007120.1

>Ec-00_007120.1 ID=Ec-00_007120.1|Name=Ec-00_007120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=110bp
MYEALEAPLLSVEERLDVLLHLKWTVSEFDCRLTRDIAELVDREADLLSR
GRGEASLRPLRQRIRNLFLRFAETPDFNPEASRFIRVPPKYGKLTDEGMV
GLTGVVSCK*
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mRNA from alignment at chr_00:11198335..11198664-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007120.1 ID=Ec-00_007120.1|Name=Ec-00_007120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=330bp|location=Sequence derived from alignment at chr_00:11198335..11198664- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTACGAAGCCCTCGAGGCCCCACTCCTGAGCGTCGAAGAGCGCCTAGA
CGTCCTCTTGCACCTAAAGTGGACCGTCAGCGAGTTCGACTGCCGGCTGA
CCCGGGACATCGCGGAGCTGGTCGACAGGGAGGCGGACCTGTTGAGCCGG
GGGCGGGGGGAGGCCAGCCTGCGGCCGCTCCGGCAGCGCATCCGCAACCT
GTTCTTGCGGTTCGCGGAGACCCCGGACTTCAACCCGGAGGCCTCGCGGT
TCATTCGAGTGCCGCCCAAGTACGGGAAGCTTACGGACGAGGGGATGGTG
GGCTTGACAGGGGTGGTCTCATGCAAGTGA
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Coding sequence (CDS) from alignment at chr_00:11198335..11198664-

>Ec-00_007120.1 ID=Ec-00_007120.1|Name=Ec-00_007120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=330bp|location=Sequence derived from alignment at chr_00:11198335..11198664- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTACGAAGCCCTCGAGGCCCCACTCCTGAGCGTCGAAGAGCGCCTAGA
CGTCCTCTTGCACCTAAAGTGGACCGTCAGCGAGTTCGACTGCCGGCTGA
CCCGGGACATCGCGGAGCTGGTCGACAGGGAGGCGGACCTGTTGAGCCGG
GGGCGGGGGGAGGCCAGCCTGCGGCCGCTCCGGCAGCGCATCCGCAACCT
GTTCTTGCGGTTCGCGGAGACCCCGGACTTCAACCCGGAGGCCTCGCGGT
TCATTCGAGTGCCGCCCAAGTACGGGAAGCTTACGGACGAGGGGATGGTG
GGCTTGACAGGGGTGGTCTCATGCAAGTGA
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Synonyms
The feature 'Ec-00_007120.1' has the following synonyms
Synonym
Esi0531_0006
Esi_0531_0006