Ec-00_007100.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007100.1
Unique NameEc-00_007100.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length35
Homology
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BLAST of Ec-00_007100.1 vs. uniprot
Match: D7G025_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G025_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 3.090e-119
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 3 
Query:    3 YADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFN 485
            YADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFN
Sbjct:   10 YADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFN 170
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BLAST of Ec-00_007100.1 vs. uniprot
Match: A0A6H5JXU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU8_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 1.890e-93
Identity = 131/162 (80.86%), Postives = 142/162 (87.65%), Query Frame = 3 
Query:    3 YADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFN 485
            Y DWPGSSPPERNT +R+ LLWQHVFL GLGMKTHVHVAVV+AGLRGCD T MMDVVFGT KK G PLPIL+RW+FCPT  TPG+V++P+LAVWHETAPCFL GV+TTVTKIAI GRIPLEWAWPNPR   LPTARRP  HLQWAIK P VQPVKRR+MLFN
Sbjct:   10 YGDWPGSSPPERNTDLRDLLLWQHVFLAGLGMKTHVHVAVVEAGLRGCDETCMMDVVFGTPKKEGDPLPILLRWEFCPTQNTPGVVSEPTLAVWHETAPCFLDGVMTTVTKIAIRGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVKRRIMLFN 171
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BLAST of Ec-00_007100.1 vs. uniprot
Match: A0A6H5L242_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L242_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 3.090e-65
Identity = 110/164 (67.07%), Postives = 121/164 (73.78%), Query Frame = 3 
Query:    3 YADWPGSSPPERNTAMREALLWQHVFLGGLGMKTHVHVAVVQAGLRGCDTTFMMDVVFGTAKKGKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLE---WAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFN 485
            YAD PGSS  E NTA+REALLWQHVFLGGLG                C TTFM+D+VFGTAKKG+PLPIL+RWDFCPTLI PGLVAKPSLAVWHETAPCFL G+V+TVTKIAIHGR PL+    A P+    T  T   P  +LQ AIK P VQPVKRR+MLFN
Sbjct:   10 YADGPGSSSSEYNTAIREALLWQHVFLGGLG----------------CGTTFMVDIVFGTAKKGEPLPILLRWDFCPTLIAPGLVAKPSLAVWHETAPCFLDGIVSTVTKIAIHGRNPLDRVGLAKPSGGATTHSTTAPP--NLQCAIKLPGVQPVKRRIMLFN 155
[Close]
BLAST of Ec-00_007100.1 vs. uniprot
Match: A0A6H5KM83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM83_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 7.760e-60
Identity = 93/110 (84.55%), Postives = 97/110 (88.18%), Query Frame = 3 
Query:  159 MMDVVFGTAKK-GKPLPILMRWDFCPTLITPGLVAKPSLAVWHETAPCFLTGVVTTVTKIAIHGRIPLEWAWPNPRTLTLPTARRPRTHLQWAIKSPRVQPVKRRMMLFN 485
            MMDVVFGT KK G PLPILMRW+ CPTLITPGLVAKPSLAVWHETAPCFL GVVTTVTKIAIHGRIPLEWAWPNPR   LPTARRP  HLQWAIK P VQPV+R ++LFN
Sbjct:    1 MMDVVFGTPKKEGDPLPILMRWEICPTLITPGLVAKPSLAVWHETAPCFLDGVVTTVTKIAIHGRIPLEWAWPNPRAGRLPTARRPLPHLQWAIKLPGVQPVERGIILFN 110
The following BLAST results are available for this feature:
BLAST of Ec-00_007100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G025_ECTSI3.090e-119100.00Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JXU8_9PHAE1.890e-9380.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L242_9PHAE3.090e-6567.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM83_9PHAE7.760e-6084.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11154652..11155706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length606
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_007100.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007100Ec-00_007100Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11154652..11155706 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007100.1.2Ec-00_007100.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11154652..11154761 -
Ec-00_007100.1.1Ec-00_007100.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11155211..11155706 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0071003UTR:Ec-00_007100.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 11154652..11154665 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007100.1CDS:Ec-00_007100.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11154666..11154761 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0071005UTR:Ec-00_007100.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 11155220..11155706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007100.1Ec-00_007100.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11154666..11155219 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007100.1 ID=Ec-00_007100.1|Name=Ec-00_007100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=35bp
MMQVLDEGQGGGPHGQLWHILGRRQGSKRDLERI*
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spliced messenger RNA

>Ec-00_007100.1 ID=Ec-00_007100.1|Name=Ec-00_007100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=606bp|location=Sequence derived from alignment at chr_00:11154652..11155706- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGTATGCTGACTGGCCGGGATCCTCGCCTCCCGAGCGCAATACAGCTATG
CGGGAAGCACTTCTTTGGCAGCACGTATTTTTGGGGGGATTGGGTATGAA
AACCCATGTACATGTTGCGGTGGTGCAAGCTGGGCTGAGAGGTTGCGACA
CAACGTTCATGATGGACGTAGTGTTTGGTACTGCCAAGAAGGGGAAGCCA
TTGCCGATCCTGATGCGGTGGGACTTTTGCCCGACGCTGATCACTCCGGG
TTTGGTTGCGAAGCCTTCGCTTGCAGTCTGGCATGAAACAGCACCTTGCT
TCCTCACCGGTGTCGTGACGACGGTGACTAAAATCGCCATACACGGACGT
ATCCCTCTCGAGTGGGCCTGGCCAAACCCTCGGACCTTAACCCTACCTAC
GGCACGACGGCCCCGGACTCATCTACAATGGGCAATCAAGTCGCCTAGGG
TACAGCCAGTCAAGCGTCGAATGATGCTGTTCAACGCATGATGCAGGTAC
TTGACGAAGGTCAAGGCGGTGGACCCCACGGACAACTATGGCATATACTC
GGACGACGCCAGGGTTCGAAACGAGACTTGGAAAGGATATAATGAATGGA
TCAAAC
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protein sequence of Ec-00_007100.1

>Ec-00_007100.1 ID=Ec-00_007100.1|Name=Ec-00_007100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=35bp
MMQVLDEGQGGGPHGQLWHILGRRQGSKRDLERI*
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mRNA from alignment at chr_00:11154652..11155706-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007100.1 ID=Ec-00_007100.1|Name=Ec-00_007100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1055bp|location=Sequence derived from alignment at chr_00:11154652..11155706- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGTATGCTGACTGGCCGGGATCCTCGCCTCCCGAGCGCAATACAGCTATG
CGGGAAGCACTTCTTTGGCAGCACGTATTTTTGGGGGGATTGGGTATGAA
AACCCATGTACATGTTGCGGTGGTGCAAGCTGGGCTGAGAGGTTGCGACA
CAACGTTCATGATGGACGTAGTGTTTGGTACTGCCAAGAAGGGGAAGCCA
TTGCCGATCCTGATGCGGTGGGACTTTTGCCCGACGCTGATCACTCCGGG
TTTGGTTGCGAAGCCTTCGCTTGCAGTCTGGCATGAAACAGCACCTTGCT
TCCTCACCGGTGTCGTGACGACGGTGACTAAAATCGCCATACACGGACGT
ATCCCTCTCGAGTGGGCCTGGCCAAACCCTCGGACCTTAACCCTACCTAC
GGCACGACGGCCCCGGACTCATCTACAATGGGCAATCAAGTCGCCTAGGG
TACAGCCAGTCAAGCGTCGAATGATGCTGTTCAACGCATGATGCAGGTTA
GAATTTTGCAGGGCATGGGTGACGACGTGTTCGAGCGTTCAGTTAGGAAC
TTCCCCGGTTCGCGTGACTACACCAAGATTTTAACTCACTTACGAGGAGG
CAGAAAGCTAACTGTAAGAAAAGCGTCATAATATTTGGATGGCACAGAGG
TGCCAAGGTGCCGATCCTTGCGAAGTTGCCAGTTCCTGTGCGTAAAGGTT
AAAATATATTCTGGGCCTAATTAAAAACGCACTCGCCGTGCAAAGACTCC
GGTCCGTGTGTGTCTGAACAATAAAATTAATACGCGGATGTCGTTGTTGT
TGTTGTGGTTGTGGTCGTTAGGGTTGTTTTTGTCTTCTCAATAGAAGAGA
CCGTTCCGGTATTGCACAGCGGGGGCTGCCGGTGGACGCTTGATACTCAT
CCCTCTCTCCCTCTCCCGCGCCACTGCAATTGTCACTTCTTGTAGGTACT
TGACGAAGGTCAAGGCGGTGGACCCCACGGACAACTATGGCATATACTCG
GACGACGCCAGGGTTCGAAACGAGACTTGGAAAGGATATAATGAATGGAT
CAAAC
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Coding sequence (CDS) from alignment at chr_00:11154652..11155706-

>Ec-00_007100.1 ID=Ec-00_007100.1|Name=Ec-00_007100.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=105bp|location=Sequence derived from alignment at chr_00:11154652..11155706- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATGCAGGTACTTGACGAAGGTCAAGGCGGTGGACCCCACGGACAACT
ATGGCATATACTCGGACGACGCCAGGGTTCGAAACGAGACTTGGAAAGGA
TATAA
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Synonyms
The feature 'Ec-00_007100.1' has the following synonyms
Synonym
Esi0530_0018
Esi_0530_0018