Ec-00_007080.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_007080.2
Unique Name	Ec-00_007080.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	240

Homology

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5K155_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K155_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 2.930e-123
Identity = 202/285 (70.88%), Postives = 217/285 (76.14%), Query Frame = 1

Query:  604 AAVRARLDEALRAIEAAKAETAEVRA-------AQQQSAGAPAGSP-GGDGLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRSSLSKRT*PALSCRTSCVVGMLRSR 1434
            A + ARLDEALRAIE                  AQ++SAGAPAGS  GGDGLVA G A SA V P  PGGVSH GGTGVPGLPLGGTIVR PVPR+P NCTAD FL+WRRRF     NH+L HTI GSAEVPVVSCQD GYLTRQ+G++LV EHKR W FILEAAVGAPFEN LYSCHSVA+AWRM+EDW+LPNHPADCQLLVAELDNITM DDED K+FFSRVAQLETK    G  +   EVVQIL+RQLPAR D EKR        PALSCRTSCVV M RSR
Sbjct:    8 ATLSARLDEALRAIEEXXXXXXXXXXXXXXXXXAQRRSAGAPAGSSSGGDGLVALGGASSAPVRPMWPGGVSHDGGTGVPGLPLGGTIVRIPVPRIPPNCTADTFLNWRRRFLAYVGNHNLQHTIFGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDLKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARCDVEKRIVFPSVIYPALSCRTSCVVDMPRSR 292

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5LA89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA89_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 5.330e-120
Identity = 202/292 (69.18%), Postives = 220/292 (75.34%), Query Frame = 1

Query:  604 AAVRARLDEALRAIEAAKAETAEVR-------AAQQQSAGAPAGSP-GGDGLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRSSLSKRT*PALSCRTSCVVGMLRSRLRDEVGG 1455
            A + ARLDEALRAIE A               AAQ++SAGAPAGS  GGDGLVA G A SA V P  PGGVSH GGTGVPGLPLGGTIVRTPVPR+P NCTAD FLSWRRRF    DNH+L HTI GSAEVPVVSCQD GYLTRQ+G++LV EHKR W FILEAAVGAPFEN LYSCHSVA AWRM+EDW+LPNHPADCQLLVAELDNITM DDEDPK+FFSRVAQLETK    G  +   EVV+IL+RQLPARYD EKR+SLS R              + R+ L+D V G
Sbjct:    8 ATLSARLDEALRAIEEAXXXXXXXXXXXXXLWAAQRRSAGAPAGSSSGGDGLVAPGGASSAPVRPMWPGGVSHDGGTGVPGLPLGGTIVRTPVPRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAGAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSEQEVVRILVRQLPARYDVEKRTSLSNRD-------------LTRAELQDVVRG 286

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5JN41_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN41_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 2.320e-117
Identity = 207/292 (70.89%), Postives = 226/292 (77.40%), Query Frame = 1

Query:  604 AAVRARLDEALRAIEAAKAET-------AEVRAAQQQSAGAPAGSP-GGDGLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRSSLSKRT*PALSCRTSCVVGMLRSRLRDEVGG 1455
            A + ARLD+ALRAIE AKAET           AAQ++SAGAPAGS  GGDGLVA G A SA V P  PGGVSH GGTGVPGLPLGGTIVRTPVPR+P NCTAD FLSWRRRF    DNH+L HTI GSAEVPVVSCQD GYLTRQ+G++LV EHKR W FILEAAVGAPFEN LYSCHSVA+AWRM+EDW+LPNHPADCQLLVAELDNITM DDEDPK+FFSRVAQLETK    G  +   EVVQIL+RQLPARYD EKR+SLSKR              + R+ L+D V G
Sbjct:    8 ATLSARLDKALRAIEEAKAETNXXXXXXXXXXAAQRRSAGAPAGSSSGGDGLVAPGGASSAPVRPMWPGGVSHDGGTGVPGLPLGGTIVRTPVPRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRD-------------LTRAELQDVVRG 286

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5KWA2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWA2_9PHAE)

HSP 1 Score: 350 bits (898), Expect = 1.490e-114
Identity = 192/292 (65.75%), Postives = 219/292 (75.00%), Query Frame = 1

Query:  604 AAVRARLDEALRAIEAAKAETAEVR-------AAQQQSAGAPAGSP-GGDGLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRSSLSKRT*PALSCRTSCVVGMLRSRLRDEVGG 1455
            AA+RARLDEALRAI+ AKAET E         AAQ++SAGAPAGS  GGDGLVA G A S  V P  PGG+S+ GGTGVP LPLGGTI  TPVPR+ SNCTA+AFLSWRR F    DNH+L HTI+GSAEVPVVSCQD GYLTRQ+G++LV EHKR W FILEAAVG P EN +YSCHSVA+AWRM+ DWFLP+HPADCQLLVAELD +TM +DE+PK+F SRVAQLETK       +   EVVQIL+RQLPARYD EKR+SL KR              + R+ L+D V G
Sbjct:    8 AALRARLDEALRAIDVAKAETKEXXXXXXXXXAAQRRSAGAPAGSSSGGDGLVAPGGASSPPVRPMWPGGMSYDGGTGVPDLPLGGTIASTPVPRISSNCTAEAFLSWRRCFLAYVDNHNLQHTISGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGGPLENKMYSCHSVAEAWRMMADWFLPSHPADCQLLVAELDTVTMNNDENPKLFCSRVAQLETKLRAVVIAKSEQEVVQILVRQLPARYDVEKRTSLPKRD-------------LTRAELQDVVRG 286

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5L646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L646_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.970e-111
Identity = 199/292 (68.15%), Postives = 219/292 (75.00%), Query Frame = 1

Query:  604 AAVRARLDEALRAIEAAKAETAEVRA-------AQQQSAGAPAGSP-GGDGLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRSSLSKRT*PALSCRTSCVVGMLRSRLRDEVGG 1455
            A + ARLDEALRAIE                  AQ++SAGAPAGS  GGDGLVA G A SA V P   GGVSH GGTGVPGLPLGGTIVRTPVPR+P NCTAD FLSWRRRF    DNH+L HTI GSAEVPVVSCQD GYLTRQ+G++LV EHKR W FILEAAVGAPFEN LYSCHSVA+AWRM+EDW+LPNHPADCQLLVAEL+NITM DDEDPK+FFSRVAQLETK    G  +   EVVQIL+RQLPAR+D EKR+SLSKR              + R+ L+D V G
Sbjct:    8 ATLSARLDEALRAIEEXXXXXXXXXXXXXXXXXAQRRSAGAPAGSSSGGDGLVAPGGASSAPVRPMWLGGVSHDGGTGVPGLPLGGTIVRTPVPRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELENITMSDDEDPKLFFSRVAQLETKLRAAGIAKSEQEVVQILVRQLPARFDVEKRTSLSKRD-------------LTRAELQDVVRG 286

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5K2K1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2K1_9PHAE)

HSP 1 Score: 370 bits (950), Expect = 2.300e-110
Identity = 202/292 (69.18%), Postives = 220/292 (75.34%), Query Frame = 1

Query:  604 AAVRARLDEALRAIEAAKAETAEVRA-------AQQQSAGAPAGSP-GGDGLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRSSLSKRT*PALSCRTSCVVGMLRSRLRDEVGG 1455
            A + ARLDEALRAIE                  AQ++SAGAPAGS  GGDGLVA G A SA V P  PGGVSH GGTGVPGLPLGGTIVRTPVPR+P NCTAD FLSWRRRF    DNH+L HTI GSAEVPVVSCQD GYLTRQ+G++LV EHKR W FILEAAVGAPFEN LYSCHSVA+AWRM+EDW+LPNHPADCQLLVAELDNITM DDEDPK+FFSRVAQLETK    G  +   EVVQIL+RQLPARYD EKR+SLSKR              + R+ L+D V G
Sbjct:    8 ATLSARLDEALRAIEEXXXXXXXXXXXXXXXXXAQRRSAGAPAGSSSGGDGLVAPGGASSAPVRPMWPGGVSHDGGTGVPGLPLGGTIVRTPVPRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRD-------------LTRAELQDVVRG 286

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 366 bits (939), Expect = 2.100e-109
Identity = 199/292 (68.15%), Postives = 220/292 (75.34%), Query Frame = 1

Query:  604 AAVRARLDEALRAIEAAKAETAE-------VRAAQQQSAGAPAGSP-GGDGLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRSSLSKRT*PALSCRTSCVVGMLRSRLRDEVGG 1455
            A + ARL+E LRAIE AKAET         +RAAQ +SAG PAGS  GGDGLV  G A SA V P  PGGVSH GGTGVPGLPLGGTIVRTPVPR+P NCTAD  LSWRRRF    DNH+L HT  GSAEVPVVSCQD GYL RQ+G++LV EHKR W FILEAAVGAPFEN LYSCHSVA+AWRM+EDW+LPNHPADCQLLVAELD+ITM DDE+PK+FFSRVAQLETK    G  +   EVVQIL+RQ PARYD EKR+SLSKR              + R+ L+D V G
Sbjct:    8 ATLSARLEEPLRAIEEAKAETXXXXXXXXXLRAAQLRSAGVPAGSSSGGDGLVTPGGASSAPVRPMWPGGVSHDGGTGVPGLPLGGTIVRTPVPRIPPNCTADTVLSWRRRFLAYVDNHNLQHTFFGSAEVPVVSCQDKGYLIRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDDITMSDDENPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQYPARYDVEKRTSLSKRD-------------LTRAELQDVVRG 286

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 358 bits (918), Expect = 1.450e-108
Identity = 191/261 (73.18%), Postives = 206/261 (78.93%), Query Frame = 1

Query:  604 AAVRARLDEALRAIEAAKAETAEVR-------AAQQQSAGAPA-GSPGGDGLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRS 1362
            A + ARLDEALRAIE                 AAQ++SAGAPA  S GGDGLVA G   SA V P  PGGVSH GGTGVPGLPLGGTIVRTPVPR+P NCTAD FLSWRRRF    DNH+L HTI GSAEVPVVSC+D GYLTRQ+G++LV EHKR W FILEAAVGAPFEN LYSCHSVA+AWRM+EDWFLPNHPADCQLLVAELDNITM DDEDPK+FFSRVAQLETK    G  +   EVVQIL+RQLPARYD EKR+
Sbjct:    8 ATLSARLDEALRAIEXXXXXXXXXXXXXXXXXAAQRRSAGAPACSSSGGDGLVAPGGVSSAPVRPMWPGGVSHDGGTGVPGLPLGGTIVRTPVPRIPLNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAEVPVVSCKDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWFLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRT 268

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5JU47_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU47_9PHAE)

HSP 1 Score: 335 bits (859), Expect = 3.830e-106
Identity = 166/225 (73.78%), Postives = 181/225 (80.44%), Query Frame = 1

Query:  781 PGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRSSLSKRT*PALSCRTSCVVGMLRSRLRDEVGG 1455
            PGGVSH GGTGVPGLPLGGTIV TPVPR+P NCTAD FLSWRRRF    DNH+L HTI GSAEVPVVSCQD GYLTRQ+G++LV EHKR W FILEAAVGAPFEN LYSCHSVA+AWRM+EDW+LPNHPADCQLLVAELDNITM DDEDPK+FFSRVAQLETK    G  +   EVVQIL+RQLPARYD EKR+SLSKR              + R+ L+D V G
Sbjct:    3 PGGVSHDGGTGVPGLPLGGTIVTTPVPRIPPNCTADTFLSWRRRFLAYVDNHNLQHTIFGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRD-------------LTRAELQDVVRG 214

[Close]

BLAST of Ec-00_007080.2 vs. uniprot
Match: A0A6H5JBS7_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBS7_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 6.770e-104
Identity = 167/225 (74.22%), Postives = 181/225 (80.44%), Query Frame = 1

Query:  781 PGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNCTADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKLVGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQLLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*LEVVQILMRQLPARYDGEKRSSLSKRT*PALSCRTSCVVGMLRSRLRDEVGG 1455
            PGGVSH GGTGVPGLPLGGTIVRTPVPR+P NCTAD  LSWRRRF    DNHDL HTI GSAEVPVVSCQD GYLTRQ+G++LV EHKR W FILEAAVGAPFEN LYSCHSVA+AWRM+EDW+LPNHPADCQLLVAELDNITM DDEDPK+FFSRVAQLETK    G  +   EVVQIL+RQLPARYD EKR+SLSKR              + R+ L+D V G
Sbjct:    3 PGGVSHDGGTGVPGLPLGGTIVRTPVPRIPPNCTADTLLSWRRRFLAYMDNHDLQHTIFGSAEVPVVSCQDEGYLTRQYGAQLVVEHKRTWSFILEAAVGAPFENNLYSCHSVAEAWRMMEDWYLPNHPADCQLLVAELDNITMSDDEDPKLFFSRVAQLETKLRAVGIAKSDQEVVQILVRQLPARYDVEKRTSLSKRD-------------LTRAELQDVVRG 214

The following BLAST results are available for this feature:

BLAST of Ec-00_007080.2 vs. uniprot

BLAST of Ec-00_007080.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K155_9PHAE	2.930e-123	70.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LA89_9PHAE	5.330e-120	69.18	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JN41_9PHAE	2.320e-117	70.89	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWA2_9PHAE	1.490e-114	65.75	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L646_9PHAE	1.970e-111	68.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2K1_9PHAE	2.300e-110	69.18	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JVD9_9PHAE	2.100e-109	68.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KYB5_9PHAE	1.450e-108	73.18	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU47_9PHAE	3.830e-106	73.78	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JBS7_9PHAE	6.770e-104	74.22	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:11103509..11105647 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	1503
Hectar predicted targeting category	other localisation
Gene id	Ec-00_007080.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_007080	Ec-00_007080	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 11103509..11105647 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007080.2.1	Ec-00_007080.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 11103509..11103815 +
Ec-00_007080.2.2	Ec-00_007080.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 11104452..11105647 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007080	5UTR:Ec-00_007080.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 11103509..11103815 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007080.2	CDS:Ec-00_007080.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 11104726..11105445 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007080	3UTR:Ec-00_007080.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 11105446..11105647 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_007080.2	Ec-00_007080.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 11104726..11105445 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:11103509..11105647+
coding sequence from alignment at chr_00:11103509..11105647+

mRNA sequence

>Ec-00_007080.2 ID=Ec-00_007080.2|Name=Ec-00_007080.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=240bp
MVGIRRIFAAVRARLDEALRAIEAAKAETAEVRAAQQQSAGAPAGSPGGD
GLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNC
TADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKL
VGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQ
LLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*

spliced messenger RNA

>Ec-00_007080.2 ID=Ec-00_007080.2|Name=Ec-00_007080.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1503bp|location=Sequence derived from alignment at chr_00:11103509..11105647+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTCCAAGGGGTAGATACACCAGACGGGCCTTTTGTGGATCTGTG
GGGCCCCGTGGCGGGGACACGTCATGACAGCTTTATTCTAGCGCAGTCTG
GGTTGATGGAGAAGTTGTCGATGCTAAACAGCCCTACAGGCCATCCGTTC
TGTTTGTACGGAGATCCGGCGTATGGACTGAGCAACCACCTTGTCTGTCC
TCTTAGCGCGTCTAGTGTCGGCCCTCTCACGCCAGAGATGGCCGACTTCA
ACAAGCGTATGAGCCACTGCCGCGTAACGGTGGAGTGGGGATTCAAAGAG
ATGACCGGCCCCTGACGGGCTACCGCACCCAAACACAATATATTGGGCCT
GGTGTTGGTAGTGATTATTGGCGTCTGAGCTGTGTGAGCCGGTTCAACGG
AGCGGCCGACACTTTTCTTCAATATTTCTTCACGCTGGGATCGCGGCCAA
CGGGGGCGAGGACAGCAGCACTGTGTAGCTGGTGCGGTGGCCATTGCGGG
GACCGGGACAGCAGGTTTTATAGCTGGGACAGCACTTCGAGGCTGGGACA
GCATATTTAGGGTTTTAGTTAGATATGTCGGATGGTGGGGATACGGAGGA
TATTTGCAGCTGTGCGCGCGAGGCTGGATGAGGCGCTGCGAGCTATAGAG
GCTGCTAAGGCTGAGACGGCGGAAGTTCGGGCAGCACAGCAGCAGTCGGC
GGGTGCACCTGCCGGCAGCCCAGGAGGCGACGGTCTAGTTGCTACTGGAC
GGGCTCCATCTGCATCGGTGGGGCCGACGGGGCCAGGTGGGGTGAGTCAC
AGTGGTGGTACTGGTGTGCCGGGTTTGCCTTTGGGAGGTACCATTGTCAG
AACTCCTGTGCCTAGACTCCCGTCAAATTGCACCGCCGACGCTTTTCTTA
GTTGGCGGAGACGGTTCCGGGTCAACGCGGACAACCATGATCTCCTGCAT
ACCATCGCCGGCAGTGCTGAGGTTCCCGTTGTGAGTTGTCAAGACGTCGG
ATACCTGACTCGCCAGTTCGGTTCAAAGCTTGTTGGTGAGCACAAGAGGA
TGTGGGGTTTTATCTTGGAGGCAGCGGTGGGGGCCCCATTTGAGAACACC
TTGTACTCTTGCCATTCCGTGGCCGATGCGTGGAGGATGATAGAGGATTG
GTTTTTGCCGAACCACCCAGCCGATTGTCAGCTTCTTGTCGCCGAGCTTG
ACAACATCACAATGAAGGATGATGAGGACCCCAAGGTGTTCTTCTCGCGC
GTTGCACAGCTTGAGACCAAGTTTGCGGGCTGTGGGCATTGTCAAGAGTG
AGCTGGAGGTTGTGCAGATTCTCATGCGCCAACTCCCTGCACGCTATGAT
GGCGAAAAACGCAGTAGCCTTTCCAAGCGTACCTAACCCGCGCTGAGCTG
TAGGACGTCGTGCGTGGTCGGTATGCTACGCTCAAGGCTACGAGATGAGG
TCGGCGGCTGGGACGCCGGCGGTTTCCGCCAACCCGCATGCGCTTGTTGT
TGG

protein sequence of Ec-00_007080.2

>Ec-00_007080.2 ID=Ec-00_007080.2|Name=Ec-00_007080.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=240bp
MVGIRRIFAAVRARLDEALRAIEAAKAETAEVRAAQQQSAGAPAGSPGGD
GLVATGRAPSASVGPTGPGGVSHSGGTGVPGLPLGGTIVRTPVPRLPSNC
TADAFLSWRRRFRVNADNHDLLHTIAGSAEVPVVSCQDVGYLTRQFGSKL
VGEHKRMWGFILEAAVGAPFENTLYSCHSVADAWRMIEDWFLPNHPADCQ
LLVAELDNITMKDDEDPKVFFSRVAQLETKFAGCGHCQE*

mRNA from alignment at chr_00:11103509..11105647+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_007080.2 ID=Ec-00_007080.2|Name=Ec-00_007080.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2139bp|location=Sequence derived from alignment at chr_00:11103509..11105647+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGTTCCAAGGGGTAGATACACCAGACGGGCCTTTTGTGGATCTGTG
GGGCCCCGTGGCGGGGACACGTCATGACAGCTTTATTCTAGCGCAGTCTG
GGTTGATGGAGAAGTTGTCGATGCTAAACAGCCCTACAGGCCATCCGTTC
TGTTTGTACGGAGATCCGGCGTATGGACTGAGCAACCACCTTGTCTGTCC
TCTTAGCGCGTCTAGTGTCGGCCCTCTCACGCCAGAGATGGCCGACTTCA
ACAAGCGTATGAGCCACTGCCGCGTAACGGTGGAGTGGGGATTCAAAGAG
ATGACCGGCAAGTGGGCCTTCGTGAACATGAAGCCGCAGCAAAAATTCTT
GCTGAGCCCTGTCGCCAAGCATTACCGGGTAGCCACTCTGCCTTCAAATT
GGCACTCATGCATGAACGGAGGCAACGAGATTGATTTCGCAATACTTTGG
CGTGGTGCCACCCACTTTCGAGAGTTACGTAGCGGTGTAAGTGCAAGATG
CACCCACGTGTGTGAGCATTTTATCCGTCTTCGGTGTTCCAGGCGTAAAC
CAACACAAACAACCGTTTGCTGGCGGGAGAAAGTCGCGCGCGACACACTT
TCCAATTTTATGTGAGTTCGAGTGATCAGCGCCAAGATTATTTTTCCTCC
TTGGTCGTTTATGTGGGCAAACGCGGGCGGATGCAGGGGACGAGCACGGA
CGGTGTATGTGTTTCGTACGGGTGTAAGCATTGCGGTTATTGGGCACCGT
TTGTTTGGGGGGTTTGAACGGTCAACTTCTGCTTGGGGTGCTCAGCAGGA
TACTGATCTACGGGGCCTCCGGGGGTTACGTGGATGATGTTTGTGTATGA
TGGACATGATACCTGCGGGCCCCCTCGTGCCTCCGCCGTGCATGCCACTC
TCTAATCAACCAAAGGTCTTGAGTCAACCTTCTTTCTTATTAGGCCCCTG
ACGGGCTACCGCACCCAAACACAATATATTGGGCCTGGTGTTGGTAGTGA
TTATTGGCGTCTGAGCTGTGTGAGCCGGTTCAACGGAGCGGCCGACACTT
TTCTTCAATATTTCTTCACGCTGGGATCGCGGCCAACGGGGGCGAGGACA
GCAGCACTGTGTAGCTGGTGCGGTGGCCATTGCGGGGACCGGGACAGCAG
GTTTTATAGCTGGGACAGCACTTCGAGGCTGGGACAGCATATTTAGGGTT
TTAGTTAGATATGTCGGATGGTGGGGATACGGAGGATATTTGCAGCTGTG
CGCGCGAGGCTGGATGAGGCGCTGCGAGCTATAGAGGCTGCTAAGGCTGA
GACGGCGGAAGTTCGGGCAGCACAGCAGCAGTCGGCGGGTGCACCTGCCG
GCAGCCCAGGAGGCGACGGTCTAGTTGCTACTGGACGGGCTCCATCTGCA
TCGGTGGGGCCGACGGGGCCAGGTGGGGTGAGTCACAGTGGTGGTACTGG
TGTGCCGGGTTTGCCTTTGGGAGGTACCATTGTCAGAACTCCTGTGCCTA
GACTCCCGTCAAATTGCACCGCCGACGCTTTTCTTAGTTGGCGGAGACGG
TTCCGGGTCAACGCGGACAACCATGATCTCCTGCATACCATCGCCGGCAG
TGCTGAGGTTCCCGTTGTGAGTTGTCAAGACGTCGGATACCTGACTCGCC
AGTTCGGTTCAAAGCTTGTTGGTGAGCACAAGAGGATGTGGGGTTTTATC
TTGGAGGCAGCGGTGGGGGCCCCATTTGAGAACACCTTGTACTCTTGCCA
TTCCGTGGCCGATGCGTGGAGGATGATAGAGGATTGGTTTTTGCCGAACC
ACCCAGCCGATTGTCAGCTTCTTGTCGCCGAGCTTGACAACATCACAATG
AAGGATGATGAGGACCCCAAGGTGTTCTTCTCGCGCGTTGCACAGCTTGA
GACCAAGTTTGCGGGCTGTGGGCATTGTCAAGAGTGAGCTGGAGGTTGTG
CAGATTCTCATGCGCCAACTCCCTGCACGCTATGATGGCGAAAAACGCAG
TAGCCTTTCCAAGCGTACCTAACCCGCGCTGAGCTGTAGGACGTCGTGCG
TGGTCGGTATGCTACGCTCAAGGCTACGAGATGAGGTCGGCGGCTGGGAC
GCCGGCGGTTTCCGCCAACCCGCATGCGCTTGTTGTTGG

Coding sequence (CDS) from alignment at chr_00:11103509..11105647+

>Ec-00_007080.2 ID=Ec-00_007080.2|Name=Ec-00_007080.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=720bp|location=Sequence derived from alignment at chr_00:11103509..11105647+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTGGGGATACGGAGGATATTTGCAGCTGTGCGCGCGAGGCTGGATGA
GGCGCTGCGAGCTATAGAGGCTGCTAAGGCTGAGACGGCGGAAGTTCGGG
CAGCACAGCAGCAGTCGGCGGGTGCACCTGCCGGCAGCCCAGGAGGCGAC
GGTCTAGTTGCTACTGGACGGGCTCCATCTGCATCGGTGGGGCCGACGGG
GCCAGGTGGGGTGAGTCACAGTGGTGGTACTGGTGTGCCGGGTTTGCCTT
TGGGAGGTACCATTGTCAGAACTCCTGTGCCTAGACTCCCGTCAAATTGC
ACCGCCGACGCTTTTCTTAGTTGGCGGAGACGGTTCCGGGTCAACGCGGA
CAACCATGATCTCCTGCATACCATCGCCGGCAGTGCTGAGGTTCCCGTTG
TGAGTTGTCAAGACGTCGGATACCTGACTCGCCAGTTCGGTTCAAAGCTT
GTTGGTGAGCACAAGAGGATGTGGGGTTTTATCTTGGAGGCAGCGGTGGG
GGCCCCATTTGAGAACACCTTGTACTCTTGCCATTCCGTGGCCGATGCGT
GGAGGATGATAGAGGATTGGTTTTTGCCGAACCACCCAGCCGATTGTCAG
CTTCTTGTCGCCGAGCTTGACAACATCACAATGAAGGATGATGAGGACCC
CAAGGTGTTCTTCTCGCGCGTTGCACAGCTTGAGACCAAGTTTGCGGGCT
GTGGGCATTGTCAAGAGTGA

Synonyms

The feature 'Ec-00_007080.2' has the following synonyms


Synonym
Esi0530_0002
Esi_0530_0002