Ec-00_007080.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007080.1
Unique NameEc-00_007080.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length105
Homology
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BLAST of Ec-00_007080.1 vs. uniprot
Match: D7G3U4_ECTSI (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U4_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 1.520e-73
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 
Query:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 309
            MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG
Sbjct:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 103
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BLAST of Ec-00_007080.1 vs. uniprot
Match: A0A6H5KVK0_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVK0_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 9.040e-70
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 309
            MKFQGV TPDG FVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHP+CLYGDPAYGLSNHLVCP SASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG
Sbjct:   21 MKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 123
[Close]
BLAST of Ec-00_007080.1 vs. uniprot
Match: A0A6H5KEG5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG5_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 5.430e-69
Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 309
            MKFQGV TPDG FVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHP+CLYGDPAYGLSNHLVCP SASSVGPLTPEMADFNKRMSHCRVTVEWGFKE+TG
Sbjct:    1 MKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEITG 103
[Close]
BLAST of Ec-00_007080.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 6.670e-68
Identity = 99/103 (96.12%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 309
            MKFQGV TPDG FVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHP+CLYGDPAYGLSNHLVCP SASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG
Sbjct:  170 MKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 272
[Close]
BLAST of Ec-00_007080.1 vs. uniprot
Match: A0A6H5K0J0_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J0_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 5.530e-66
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 309
            MKFQG+ TPDG FVDLWGPVAGTRHDSF+LAQSGLMEKLSMLNSPTGHP+CLYGDPAYGL NHLVCP SASSVGP TPEMADFNKR SHCRVTVEWGFKEMTG
Sbjct:  100 MKFQGIITPDGLFVDLWGPVAGTRHDSFMLAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLRNHLVCPFSASSVGPFTPEMADFNKRTSHCRVTVEWGFKEMTG 202
[Close]
BLAST of Ec-00_007080.1 vs. uniprot
Match: A0A6H5JJ08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ08_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 1.250e-65
Identity = 97/103 (94.17%), Postives = 99/103 (96.12%), Query Frame = 1 
Query:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 309
            MKFQGV TPDG FVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHP+CLYGDPAYGLSN+LVCP SASSVGP TPEMADFNKRMSHCRVTVEWGFKEMTG
Sbjct:  208 MKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNYLVCPFSASSVGPRTPEMADFNKRMSHCRVTVEWGFKEMTG 310
[Close]
BLAST of Ec-00_007080.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 3.810e-63
Identity = 93/103 (90.29%), Postives = 94/103 (91.26%), Query Frame = 1 
Query:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 309
            MKFQGV TPDG FVDLWGPVAGTRH SFILAQ GLMEKLSM NSP GHP+ LYGDPAYGLSNHLVCP SASS GPLTPEMADFNKRMSHCRVTVEWGFKEMTG
Sbjct:   70 MKFQGVITPDGLFVDLWGPVAGTRHHSFILAQFGLMEKLSMQNSPIGHPYYLYGDPAYGLSNHLVCPFSASSAGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 172
[Close]
BLAST of Ec-00_007080.1 vs. uniprot
Match: A0A6H5K191_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K191_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.140e-61
Identity = 91/103 (88.35%), Postives = 95/103 (92.23%), Query Frame = 1 
Query:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 309
            MKFQGV TPDG FVDLWGPVAGTRHDSFI  QSGLMEKLSML++P GHP+CL GDPAYGLSNHLVCP SASSVGPLTPEMADFNKRMSHCRVTVE GF+EMTG
Sbjct:   12 MKFQGVITPDGLFVDLWGPVAGTRHDSFI--QSGLMEKLSMLSNPAGHPYCLCGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVERGFEEMTG 112
[Close]
BLAST of Ec-00_007080.1 vs. uniprot
Match: A0A6H5JR44_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR44_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 4.140e-61
Identity = 96/132 (72.73%), Postives = 97/132 (73.48%), Query Frame = 1 
Query:    1 MKFQGVDTPDGP-----------------------------FVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 309
            M FQGV TPDGP                             FV LWGPVA TRH SFILAQSGLMEKLSMLNSPTGHP+CLYGDPAYGLSNHLVCP SASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG
Sbjct:    1 MNFQGVITPDGPKYLLAANDPQWAQEEARHELPRGNYTRRVFVHLWGPVAWTRHGSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVEWGFKEMTG 132
[Close]
BLAST of Ec-00_007080.1 vs. uniprot
Match: A0A6H5KRJ1_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRJ1_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 5.710e-58
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:    1 MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPFCLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEW 288
            MKFQGV TPDG FVDLWGPVAGTRH SFILAQSGLMEK+S+LNSPT HP+CL GDPAYGLSNHLVCP SASSVGPLTPEMADFNKRMSHCRVTVEW
Sbjct:  195 MKFQGVITPDGLFVDLWGPVAGTRHYSFILAQSGLMEKMSVLNSPTSHPYCLCGDPAYGLSNHLVCPFSASSVGPLTPEMADFNKRMSHCRVTVEW 290
The following BLAST results are available for this feature:
BLAST of Ec-00_007080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3U4_ECTSI1.520e-73100.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KVK0_9PHAE9.040e-7096.12DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KEG5_9PHAE5.430e-6995.15DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KB08_9PHAE6.670e-6896.12DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K0J0_9PHAE5.530e-6691.26DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JJ08_9PHAE1.250e-6594.17DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY46_9PHAE3.810e-6390.29DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K191_9PHAE2.140e-6188.35DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JR44_9PHAE4.140e-6172.73DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KRJ1_9PHAE5.710e-5890.63DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11103509..11104459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue2.6e-44
Seed eggNOG ortholog2880.D7G105
Length315
Hectar predicted targeting categoryother localisation
Gene idEc-00_007080.1
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007080Ec-00_007080Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11103509..11105647 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007080.1.1Ec-00_007080.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11103509..11103815 +
Ec-00_007080.1.2Ec-00_007080.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11104452..11104459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007080.1CDS:Ec-00_007080.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11103509..11103815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007080.1Ec-00_007080.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11103509..11104459 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007080.1 ID=Ec-00_007080.1|Name=Ec-00_007080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=105bp
MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPF
CLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKE
MTGP*
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spliced messenger RNA

>Ec-00_007080.1 ID=Ec-00_007080.1|Name=Ec-00_007080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=315bp|location=Sequence derived from alignment at chr_00:11103509..11104459+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTCCAAGGGGTAGATACACCAGACGGGCCTTTTGTGGATCTGTG
GGGCCCCGTGGCGGGGACACGTCATGACAGCTTTATTCTAGCGCAGTCTG
GGTTGATGGAGAAGTTGTCGATGCTAAACAGCCCTACAGGCCATCCGTTC
TGTTTGTACGGAGATCCGGCGTATGGACTGAGCAACCACCTTGTCTGTCC
TCTTAGCGCGTCTAGTGTCGGCCCTCTCACGCCAGAGATGGCCGACTTCA
ACAAGCGTATGAGCCACTGCCGCGTAACGGTGGAGTGGGGATTCAAAGAG
ATGACCGGCCCCTGA
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protein sequence of Ec-00_007080.1

>Ec-00_007080.1 ID=Ec-00_007080.1|Name=Ec-00_007080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=105bp
MKFQGVDTPDGPFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPF
CLYGDPAYGLSNHLVCPLSASSVGPLTPEMADFNKRMSHCRVTVEWGFKE
MTGP*
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mRNA from alignment at chr_00:11103509..11104459+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007080.1 ID=Ec-00_007080.1|Name=Ec-00_007080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=951bp|location=Sequence derived from alignment at chr_00:11103509..11104459+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGTTCCAAGGGGTAGATACACCAGACGGGCCTTTTGTGGATCTGTG
GGGCCCCGTGGCGGGGACACGTCATGACAGCTTTATTCTAGCGCAGTCTG
GGTTGATGGAGAAGTTGTCGATGCTAAACAGCCCTACAGGCCATCCGTTC
TGTTTGTACGGAGATCCGGCGTATGGACTGAGCAACCACCTTGTCTGTCC
TCTTAGCGCGTCTAGTGTCGGCCCTCTCACGCCAGAGATGGCCGACTTCA
ACAAGCGTATGAGCCACTGCCGCGTAACGGTGGAGTGGGGATTCAAAGAG
ATGACCGGCAAGTGGGCCTTCGTGAACATGAAGCCGCAGCAAAAATTCTT
GCTGAGCCCTGTCGCCAAGCATTACCGGGTAGCCACTCTGCCTTCAAATT
GGCACTCATGCATGAACGGAGGCAACGAGATTGATTTCGCAATACTTTGG
CGTGGTGCCACCCACTTTCGAGAGTTACGTAGCGGTGTAAGTGCAAGATG
CACCCACGTGTGTGAGCATTTTATCCGTCTTCGGTGTTCCAGGCGTAAAC
CAACACAAACAACCGTTTGCTGGCGGGAGAAAGTCGCGCGCGACACACTT
TCCAATTTTATGTGAGTTCGAGTGATCAGCGCCAAGATTATTTTTCCTCC
TTGGTCGTTTATGTGGGCAAACGCGGGCGGATGCAGGGGACGAGCACGGA
CGGTGTATGTGTTTCGTACGGGTGTAAGCATTGCGGTTATTGGGCACCGT
TTGTTTGGGGGGTTTGAACGGTCAACTTCTGCTTGGGGTGCTCAGCAGGA
TACTGATCTACGGGGCCTCCGGGGGTTACGTGGATGATGTTTGTGTATGA
TGGACATGATACCTGCGGGCCCCCTCGTGCCTCCGCCGTGCATGCCACTC
TCTAATCAACCAAAGGTCTTGAGTCAACCTTCTTTCTTATTAGGCCCCTG
A
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Coding sequence (CDS) from alignment at chr_00:11103509..11104459+

>Ec-00_007080.1 ID=Ec-00_007080.1|Name=Ec-00_007080.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=315bp|location=Sequence derived from alignment at chr_00:11103509..11104459+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGTTCCAAGGGGTAGATACACCAGACGGGCCTTTTGTGGATCTGTG
GGGCCCCGTGGCGGGGACACGTCATGACAGCTTTATTCTAGCGCAGTCTG
GGTTGATGGAGAAGTTGTCGATGCTAAACAGCCCTACAGGCCATCCGTTC
TGTTTGTACGGAGATCCGGCGTATGGACTGAGCAACCACCTTGTCTGTCC
TCTTAGCGCGTCTAGTGTCGGCCCTCTCACGCCAGAGATGGCCGACTTCA
ACAAGCGTATGAGCCACTGCCGCGTAACGGTGGAGTGGGGATTCAAAGAG
ATGACCGGCCCCTGA
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Synonyms
The feature 'Ec-00_007080.1' has the following synonyms
Synonym
Esi0530_0002
Esi_0530_0002