Ec-00_007020.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007020.1
Unique NameEc-00_007020.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length184
Homology
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BLAST of Ec-00_007020.1 vs. uniprot
Match: D7G3U0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U0_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 8.980e-151
Identity = 215/216 (99.54%), Postives = 216/216 (100.00%), Query Frame = 1 
Query:  676 QSTPSRTTPRPGGLPRLCLEGRCTNRQCDAHGRMVILNHAFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPADERMERPNTTANTATSTVAVVIDHTWSRCTXXXXXSAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ 1323
            +STPSRTTPRPGGLPRLCLEGRCTNRQCDAHGRMVILNHAFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPADERMERPNTTANTATSTVAVVIDHTWSRCTXXXXXSAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ
Sbjct:    4 KSTPSRTTPRPGGLPRLCLEGRCTNRQCDAHGRMVILNHAFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPADERMERPNTTANTATSTVAVVIDHTWSRCTXXXXXSAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ 219
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BLAST of Ec-00_007020.1 vs. uniprot
Match: A0A6H5KZP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP2_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 9.690e-119
Identity = 182/202 (90.10%), Postives = 186/202 (92.08%), Query Frame = 1 
Query:  718 PRLCLEGRCTNRQCDAHGRMVILNHAFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPADERMERPNTTANTATSTVAVVIDHTWSRCTXXXXXSAFGATPASDETVLDCGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ 1323
            P LCLEGRCTN  CDAHGRMVILNH  RDFDLIRPGRDPKRCPMCN EVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRF+  GEV+WDRLLIQ RPLLKLEQRVPSAPPADER+ERPNTTA +ATSTVA VIDHTW RC XXXXXSAFGAT ASDETVLDCGHRFHTRCL GWEQGSMIVCPICREES PLPQ
Sbjct:  384 PGLCLEGRCTNSDCDAHGRMVILNHGLRDFDLIRPGRDPKRCPMCNFEVVPSTCAFTDCTWRYKGRKAGETNVLVGMWKEAGDSYHRFDGRGEVEWDRLLIQARPLLKLEQRVPSAPPADERVERPNTTAISATSTVADVIDHTWGRCXXXXXXSAFGATSASDETVLDCGHRFHTRCLTGWEQGSMIVCPICREESWPLPQ 585
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BLAST of Ec-00_007020.1 vs. uniprot
Match: D2VTG7_NAEGR (Polyubiquitin n=2 Tax=Eukaryota TaxID=2759 RepID=D2VTG7_NAEGR)

HSP 1 Score: 159 bits (403), Expect = 9.670e-42
Identity = 92/155 (59.35%), Postives = 110/155 (70.97%), Query Frame = 3 
Query:  150 TGKTLQLVVSTNDTTTDVKKKIQDSDGIIPLDQQRLLCTTQMMDDLRTVSEYKI-KGDTLHLIQRVSGGGWACPPSLGKYVIFVKTLTGKTVELVVGSYNTIADMKLMIQDKKGIPPDQQRLIFGGKQLADGLTCSFYNIEGNSTLHLVLRLRGG 611
            TGKT+ L V +NDT  +VK KIQD +GI P DQQRL+   + ++D RT+S+Y I K  TLHL+ R+ GGG           IFVKTLTGKT+ L V S +TI ++K  IQDK+GIPPDQQRLIF GKQL DG T S YNI+  STLHLVLRLRGG
Sbjct:    9 TGKTITLEVESNDTIENVKSKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGMQ---------IFVKTLTGKTITLEVESNDTIENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 153
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BLAST of Ec-00_007020.1 vs. uniprot
Match: UPI0019D5AC57 (polyubiquitin-like isoform X2 n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5AC57)

HSP 1 Score: 159 bits (402), Expect = 1.250e-40
Identity = 91/155 (58.71%), Postives = 114/155 (73.55%), Query Frame = 3 
Query:  150 TGKTLQLVVSTNDTTTDVKKKIQDSDGIIPLDQQRLLCTTQMMDDLRTVSEYKI-KGDTLHLIQRVSGGGWACPPSLGKYVIFVKTLTGKTVELVVGSYNTIADMKLMIQDKKGIPPDQQRLIFGGKQLADGLTCSFYNIEGNSTLHLVLRLRGG 611
            TGKT+ L V ++DT  +VK KIQD +GI P DQQRL+   + +DD RT+++Y I K  TLHL+ R+ GGG    P++ +  IFVKTLTGKTV L V S +TIA++K  IQDK+GIPPDQQRLIF GKQL D  T + Y+I+  STLHLVLRLRGG
Sbjct:    9 TGKTITLEVESSDTVENVKAKIQDKEGIPP-DQQRLIFAGKQLDDGRTLADYNIQKESTLHLVLRLRGGGRGGYPTM-RMQIFVKTLTGKTVTLEVESSDTIANVKAKIQDKEGIPPDQQRLIFAGKQLEDNRTLADYSIQKESTLHLVLRLRGG 161
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BLAST of Ec-00_007020.1 vs. uniprot
Match: A0A5B6ZQB2_DAVIN (Putative polyubiquitin 11-like n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZQB2_DAVIN)

HSP 1 Score: 158 bits (400), Expect = 1.960e-40
Identity = 100/199 (50.25%), Postives = 126/199 (63.32%), Query Frame = 3 
Query:  150 TGKTLQLVVSTNDTTTDVKKKIQDSDGIIPLDQQRLLCTTQMMDDLRTVSEYKI-KGDTLHLIQRVSGGGWACPPSLGKYVIFVKTLTGKTVELVVGSYNTIADMKLMIQDKKGIPPDQQRLIFGGKQLADGLTCSFYNIEGNSTLHLVLRLRGGFAAPTVAVGAKFADVS-DSSDLTEHAFSNDAPSWRVAEAVPGRK 740
            TGKT+ L V ++DT  +VK KIQD +GI P DQQRL+   + ++D RT+++Y I K  TLHL+ R+ GG            IFVKTLTGKT+ L V S +TI ++K  IQDK+GIPPDQQRLIF GKQL DG T + YNI+  STLHLVLRLRGG       +  K   +  +SSD  ++  S  A      EAV GRK
Sbjct:    9 TGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG----------MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVXSGPAEVDLRWEAVGGRK 196
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BLAST of Ec-00_007020.1 vs. uniprot
Match: A0A0D2U0D4_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U0D4_CAPO3)

HSP 1 Score: 158 bits (399), Expect = 2.380e-40
Identity = 99/192 (51.56%), Postives = 122/192 (63.54%), Query Frame = 3 
Query:  150 TGKTLQLVVSTNDTTTDVKKKIQDSDGIIPLDQQRLLCTTQMMDDLRTVSEYKI-KGDTLHLIQRVSGGGWACPPSLGKYVIFVKTLTGKTVELVVGSYNTIADMKLMIQDKKGIPPDQQRLIFGGKQLADGLTCSFYNIEGNSTLHLVLRLRGGFAAPTVAVGAKFADVSDSSDLTEHAFSNDAPSWRVAE 722
            TGKT+ L V ++DT  +VK KIQD +GI P DQQRL+   + ++D RT+S+Y I K  TLHL+ R+ GG            IFVKTLTGKT+ L V S +TI ++K  IQDK+GIPPDQQRLIF GKQL DG T S YNI+  STLHLVLRLRGG   P     AK A V       + +F     + R+AE
Sbjct:    9 TGKTITLDVESSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----------MQIFVKTLTGKTITLDVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKCPFEGCSAKTALVIGDCKYCKSSFCG---THRLAE 186
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BLAST of Ec-00_007020.1 vs. uniprot
Match: A0A8K0UFX0_9AGAM (Ubiquitin-related domain-containing protein n=2 Tax=Dikarya TaxID=451864 RepID=A0A8K0UFX0_9AGAM)

HSP 1 Score: 156 bits (395), Expect = 2.420e-40
Identity = 91/156 (58.33%), Postives = 110/156 (70.51%), Query Frame = 3 
Query:  150 TGKTLQLVVSTNDTTTDVKKKIQDSDGIIPLDQQRLLCTTQMMDDLRTVSEYKI-KGDTLHLIQRVSGGGWACPPSLGKYVIFVKTLTGKTVELVVGSYNTIADMKLMIQDKKGIPPDQQRLIFGGKQLADGLTCSFYNIEGNSTLHLVLRLRGGF 614
            TGKT+ L V ++DT  +VK KIQD +GI P DQQRL+   + ++D RT+S+Y I K  TLHL+ R+ GG            IFVKTLTGKT+ L V S +TI ++K  IQDK+GIPPDQQRLIF GKQL DG T S YNI+  STLHLVLRLRGGF
Sbjct:   33 TGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----------MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGF 177
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BLAST of Ec-00_007020.1 vs. uniprot
Match: A0A0K3CII4_RHOTO (BY PROTMAP: gi|585713025|ref|XP_006900560.1| PREDICTED: polyubiquitin-C-like [Elephantulus edwardii] n=1 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CII4_RHOTO)

HSP 1 Score: 155 bits (391), Expect = 4.160e-40
Identity = 91/157 (57.96%), Postives = 110/157 (70.06%), Query Frame = 3 
Query:  150 TGKTLQLVVSTNDTTTDVKKKIQDSDGIIPLDQQRLLCTTQMMDDLRTVSEYKI-KGDTLHLIQRVSGGGWACPPSLGKYVIFVKTLTGKTVELVVGSYNTIADMKLMIQDKKGIPPDQQRLIFGGKQLADGLTCSFYNIEGNSTLHLVLRLRGGFA 617
            TGKT+ L V ++DT  +VK KIQD +GI P DQQRL+   + ++D RT+S+Y I K  TLHL+ R+ GG            IFVKTLTGKT+ L V S +TI ++K  IQDK+GIPPDQQRLIF GKQL DG T S YNI+  STLHLVLRLRGG A
Sbjct:    9 TGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----------MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGSA 154
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BLAST of Ec-00_007020.1 vs. uniprot
Match: A0A1Y1XLM2_9FUNG (Ubiquitin n=2 Tax=Zoopagomycota TaxID=1913638 RepID=A0A1Y1XLM2_9FUNG)

HSP 1 Score: 154 bits (390), Expect = 5.520e-40
Identity = 90/155 (58.06%), Postives = 110/155 (70.97%), Query Frame = 3 
Query:  150 TGKTLQLVVSTNDTTTDVKKKIQDSDGIIPLDQQRLLCTTQMMDDLRTVSEYKI-KGDTLHLIQRVSGGGWACPPSLGKYVIFVKTLTGKTVELVVGSYNTIADMKLMIQDKKGIPPDQQRLIFGGKQLADGLTCSFYNIEGNSTLHLVLRLRGG 611
            TGKT+ L V ++DT  +VK+KIQD +GI P DQQRL+   + ++D RT+S+Y I K  TLHL+ R+ GG            IFVKTLTGKT+ L V S +TI ++K  IQDK+GIPPDQQRLIF GKQL DG T S YNI+  STLHLVLRLRGG
Sbjct:    9 TGKTITLEVESSDTIDNVKQKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----------MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
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BLAST of Ec-00_007020.1 vs. uniprot
Match: A0A1Y3MRB1_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MRB1_PIRSE)

HSP 1 Score: 154 bits (390), Expect = 5.520e-40
Identity = 90/155 (58.06%), Postives = 109/155 (70.32%), Query Frame = 3 
Query:  150 TGKTLQLVVSTNDTTTDVKKKIQDSDGIIPLDQQRLLCTTQMMDDLRTVSEYKI-KGDTLHLIQRVSGGGWACPPSLGKYVIFVKTLTGKTVELVVGSYNTIADMKLMIQDKKGIPPDQQRLIFGGKQLADGLTCSFYNIEGNSTLHLVLRLRGG 611
            TGKT+ L V ++DT  +VK KIQD +GI P DQQRL+   + ++D RT+S+Y I K  TLHL+ R+ GG            IFVKTLTGKT+ L V S +TI ++K  IQDK+GIPPDQQRLIF GKQL DG T S YNI+  STLHLVLRLRGG
Sbjct:    9 TGKTITLEVESSDTIENVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG----------MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
The following BLAST results are available for this feature:
BLAST of Ec-00_007020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3U0_ECTSI8.980e-15199.54RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZP2_9PHAE9.690e-11990.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D2VTG7_NAEGR9.670e-4259.35Polyubiquitin n=2 Tax=Eukaryota TaxID=2759 RepID=D... [more]
UPI0019D5AC571.250e-4058.71polyubiquitin-like isoform X2 n=2 Tax=Panicum virg... [more]
A0A5B6ZQB2_DAVIN1.960e-4050.25Putative polyubiquitin 11-like n=1 Tax=Davidia inv... [more]
A0A0D2U0D4_CAPO32.380e-4051.56Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A8K0UFX0_9AGAM2.420e-4058.33Ubiquitin-related domain-containing protein n=2 Ta... [more]
A0A0K3CII4_RHOTO4.160e-4057.96BY PROTMAP: gi|585713025|ref|XP_006900560.1| PREDI... [more]
A0A1Y1XLM2_9FUNG5.520e-4058.06Ubiquitin n=2 Tax=Zoopagomycota TaxID=1913638 RepI... [more]
A0A1Y3MRB1_PIRSE5.520e-4058.06Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11072478..11075569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue7.2e-26
Seed eggNOG ortholog2880.D7FKZ7
Length2573
KEGG koko:K02983
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
Gene idEc-00_007020.1
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007020Ec-00_007020Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11072478..11075569 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007020.1.1Ec-00_007020.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11072478..11072597 +
Ec-00_007020.1.2Ec-00_007020.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11073117..11075569 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0070205UTR:Ec-00_007020.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 11072478..11072597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007020.1CDS:Ec-00_007020.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11073773..11074324 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0070203UTR:Ec-00_007020.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 11074325..11075569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007020.1Ec-00_007020.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11073773..11074324 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007020.1 ID=Ec-00_007020.1|Name=Ec-00_007020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=184bp
MVILNHAFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAG
ETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPA
DERMERPNTTANTATSTVAVVIDHTWSRCTRCTDCSAFGATPASDETVLD
CGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ*
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spliced messenger RNA

>Ec-00_007020.1 ID=Ec-00_007020.1|Name=Ec-00_007020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2573bp|location=Sequence derived from alignment at chr_00:11072478..11075569+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GCGGTTTTGGAACAGGTTCTGCACGGCGGGTTCGACCAGAGTTTGGACGG
TCCTGAGCTTACACCCTGAGGCTTTTACACTTTCTCGGGGGAACCAGTGC
TGTTTCGAATGGGCCCGAAAAAGCAGATGAACGTCTCCGTCCAGACTCCC
GACCGGGAAAACACTCCAGCTTGTCGTCAGCACGAACGACACGACCACCG
ACGTGAAGAAAAAGATCCAGGACAGCGACGGCATCATCCCGCTCGACCAG
CAGCGTCTGCTCTGCACAACCCAAATGATGGATGATCTTCGCACGGTTTC
AGAATACAAGATCAAAGGAGACACGCTTCACTTGATTCAGCGTGTGAGCG
GGGGCGGGTGGGCGTGTCCTCCCTCGCTTGGAAAGTATGTGATATTCGTC
AAGACCCTCACCGGAAAAACTGTCGAGCTTGTCGTCGGCTCGTACAACAC
GATCGCCGACATGAAGCTAATGATTCAGGACAAGAAGGGGATCCCGCCCG
ACCAGCAGCGGCTGATATTCGGCGGCAAGCAGCTGGCGGACGGTCTTACG
TGTTCATTTTACAACATAGAAGGAAATTCTACGCTTCACTTGGTCCTTCG
CTTGAGAGGTGGATTCGCTGCTCCCACCGTTGCCGTTGGCGCGAAGTTTG
CCGACGTTTCCGACTCGTCCGACCTCACAGAGCACGCCTTCTCGAACGAC
GCCCCGTCCTGGAGGGTTGCCGAGGCTGTGCCTGGAAGGAAGGTGCACCA
ACCGCCAATGCGACGCTCACGGCCGCATGGTCATCCTTAACCATGCGTTC
CGGGACTTCGACCTGATCCGGCCCGGCAGAGACCCGAAGCGCTGCCCAAT
GTGCAACCGCGAGGTGGTGCCGAGCACGTGTGCCTTCACCGACTGCACGT
GGAGGTACAAGGGGCGGAAGGCCGGGGAGACCAACGTCCTGGTCGGCATG
TGGAAAGAGGCCGGCGACAGCTACCACCGCTTCGAGGAAGGGGGTGAGGT
GCAGTGGGACAGGCTGCTCATCCAGGTCAGGCCCCTGCTCAAGCTCGAGC
AACGTGTCCCTTCCGCACCACCGGCGGACGAGAGGATGGAGCGTCCCAAC
ACGACAGCCAATACCGCGACGTCAACCGTAGCAGTCGTGATCGACCACAC
GTGGAGTCGATGCACGAGGTGCACGGATTGTTCCGCGTTCGGGGCAACCC
CTGCGTCCGACGAGACGGTCCTGGATTGTGGCCACCGGTTCCACACCAGG
TGCCTCGCGGGCTGGGAGCAGGGCTCGATGATCGTCTGTCCCATCTGCCG
GGAAGAGTCGTCGCCGCTGCCTCAGTAGAGAGCAGTGTCGACATGCATGT
TGGCATGTTTGACCGACCCAGGGCTCGACGCAGTGCGCATGGTGTGTGTG
TCGTGTGTTTGAATATCGAGGCATCGTTACTTTACCGGATGAAAGAAAAA
ACGTGTTTCTTTCTTTAGATGGGTCACCTGTCAACCCCAGGAGGCGTAGA
TATGCTGCTCTAGTGGTTTGATGATGAGCTCCTCCTCCTGCAAGTGTTTG
GTCGAGTTGTGCGGGTAAATGCCAGGCATACGTTGACTGTGATCCGAAGA
CGAAGCAGAACAGGAGAGCGTTTATATCTCCGCCGTGATTGCCTCGGGGA
GTCGTCTGTATGACGTGAGTTGGGTTGGTTTGGGTTCAGCTGGGTTGGGT
CGGATCAACTTGGGTTGGTCGGTTTTGGGTACTGAAATGTGCCCTGTCGA
TTTCACGTGTTCGTACCACGGGGTACATTAGGAAAGGGCACATAGCAGGT
CTCCACCCACGGGGGTGTTGGGATACCTCTGTCGCGACACGACACGGACA
CTACCATGTGATATTGCGTGGTCTCGCAAAGTTTGTGCGACTTGGGGGCG
CCATTTCGAACCTAGCTGCGCTGTAAGTTGTTGTAATATCGGTCGCCGAA
CGCGCCACGAAGATGGCCGATCTGAATGTAATGTTTGTGCACACATCTGG
TTGTATGGGACGAACCATCCCACTGCAACCAACATGAATGCGAATATTGG
AACAGGCACACAGCGCGTCGTACCAAGTCGCGGGGCGAGGTGGAGATGAA
ACAATGCGTCAAGTTCCCCAAACGGCACACACGCACGTGGTAGGGCAAAC
ACATGCACTAGCATGCATAGAAAATGAAACCCTAACAACGCAACACCACA
CAGCGGAATATGAGATGGAACCCTTGGTAGTTCAAGCCAAATCATGGATG
AACCAAACCCCCATGCTCCCACAGACACAAACCATACACACAAACTCGTC
GGTTCAGCCGGGAAGCGCGGTCGAAGCTAACAATGAGAAAGACACACGCG
CGCGTGCGTTTGAACAAAAAACACATCTTGGTTAGAATGTGACAATTTAT
CCACGGCGGTCGACCCTCCGTTTGCTACAATAGTCGTCCCAACGATTTTA
CTAGGCGATTCACAACGATGCCTCCTAGTCTACTCCTTCTCAAGCCCAAA
ATAGAGCCAGAGGCTCGGCACGAAGTAGCAGGAACTTTTTCCGCACGGAC
AAAACGATTGGAGCGGGGGCGGG
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protein sequence of Ec-00_007020.1

>Ec-00_007020.1 ID=Ec-00_007020.1|Name=Ec-00_007020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=184bp
MVILNHAFRDFDLIRPGRDPKRCPMCNREVVPSTCAFTDCTWRYKGRKAG
ETNVLVGMWKEAGDSYHRFEEGGEVQWDRLLIQVRPLLKLEQRVPSAPPA
DERMERPNTTANTATSTVAVVIDHTWSRCTRCTDCSAFGATPASDETVLD
CGHRFHTRCLAGWEQGSMIVCPICREESSPLPQ*
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mRNA from alignment at chr_00:11072478..11075569+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007020.1 ID=Ec-00_007020.1|Name=Ec-00_007020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3092bp|location=Sequence derived from alignment at chr_00:11072478..11075569+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GCGGTTTTGGAACAGGTTCTGCACGGCGGGTTCGACCAGAGTTTGGACGG
TCCTGAGCTTACACCCTGAGGCTTTTACACTTTCTCGGGGGAACCAGTGC
TGTTTCGAATGGGCCCGAAAGTGAGTGCACCCCGCACGGTACATTCTTTT
CACACTGCACGTCTGGGCCGCAGAGGTCTGTGCAGGCGCACCAAACACAT
CTTTGCCGCCGGTTTCGATCCCGAGCATTGCTCCTCACGCCAAATACGCA
GCGAATTCATTGGCCCGCTCTTTGAGTAGATCGTGGCACATCGATCGGTA
GTTTTGCTGCCGCCACTGAGAGAGCGGGCCAAGGTGTTTTCATTCGGACG
GCATGATCGGCAGAGGAGAAACAAGTGATTCAGCAAAAAAAAGAGGGGGA
AGATGCTAGATTAATGTATTCCCAGCCACAAATAATACATAAGCGCCGTG
GACGTGGTTTGAGTAGCCTGGCGGGCGGATTGATGTTCTTAGCCGGCCCG
AGCGGGTAGACATCGCTGGCGAAGCCTTTTGGGCGTATGACATTCCCTCG
TCCCTTCTACTGACCCGATACCGTTTGTGACCCCCCCCCCCCCCCGTCCC
TATGGCTCGTCTGTTCTTCTTGGTTTCTTCCGCTCTCAGAAGCAGATGAA
CGTCTCCGTCCAGACTCCCGACCGGGAAAACACTCCAGCTTGTCGTCAGC
ACGAACGACACGACCACCGACGTGAAGAAAAAGATCCAGGACAGCGACGG
CATCATCCCGCTCGACCAGCAGCGTCTGCTCTGCACAACCCAAATGATGG
ATGATCTTCGCACGGTTTCAGAATACAAGATCAAAGGAGACACGCTTCAC
TTGATTCAGCGTGTGAGCGGGGGCGGGTGGGCGTGTCCTCCCTCGCTTGG
AAAGTATGTGATATTCGTCAAGACCCTCACCGGAAAAACTGTCGAGCTTG
TCGTCGGCTCGTACAACACGATCGCCGACATGAAGCTAATGATTCAGGAC
AAGAAGGGGATCCCGCCCGACCAGCAGCGGCTGATATTCGGCGGCAAGCA
GCTGGCGGACGGTCTTACGTGTTCATTTTACAACATAGAAGGAAATTCTA
CGCTTCACTTGGTCCTTCGCTTGAGAGGTGGATTCGCTGCTCCCACCGTT
GCCGTTGGCGCGAAGTTTGCCGACGTTTCCGACTCGTCCGACCTCACAGA
GCACGCCTTCTCGAACGACGCCCCGTCCTGGAGGGTTGCCGAGGCTGTGC
CTGGAAGGAAGGTGCACCAACCGCCAATGCGACGCTCACGGCCGCATGGT
CATCCTTAACCATGCGTTCCGGGACTTCGACCTGATCCGGCCCGGCAGAG
ACCCGAAGCGCTGCCCAATGTGCAACCGCGAGGTGGTGCCGAGCACGTGT
GCCTTCACCGACTGCACGTGGAGGTACAAGGGGCGGAAGGCCGGGGAGAC
CAACGTCCTGGTCGGCATGTGGAAAGAGGCCGGCGACAGCTACCACCGCT
TCGAGGAAGGGGGTGAGGTGCAGTGGGACAGGCTGCTCATCCAGGTCAGG
CCCCTGCTCAAGCTCGAGCAACGTGTCCCTTCCGCACCACCGGCGGACGA
GAGGATGGAGCGTCCCAACACGACAGCCAATACCGCGACGTCAACCGTAG
CAGTCGTGATCGACCACACGTGGAGTCGATGCACGAGGTGCACGGATTGT
TCCGCGTTCGGGGCAACCCCTGCGTCCGACGAGACGGTCCTGGATTGTGG
CCACCGGTTCCACACCAGGTGCCTCGCGGGCTGGGAGCAGGGCTCGATGA
TCGTCTGTCCCATCTGCCGGGAAGAGTCGTCGCCGCTGCCTCAGTAGAGA
GCAGTGTCGACATGCATGTTGGCATGTTTGACCGACCCAGGGCTCGACGC
AGTGCGCATGGTGTGTGTGTCGTGTGTTTGAATATCGAGGCATCGTTACT
TTACCGGATGAAAGAAAAAACGTGTTTCTTTCTTTAGATGGGTCACCTGT
CAACCCCAGGAGGCGTAGATATGCTGCTCTAGTGGTTTGATGATGAGCTC
CTCCTCCTGCAAGTGTTTGGTCGAGTTGTGCGGGTAAATGCCAGGCATAC
GTTGACTGTGATCCGAAGACGAAGCAGAACAGGAGAGCGTTTATATCTCC
GCCGTGATTGCCTCGGGGAGTCGTCTGTATGACGTGAGTTGGGTTGGTTT
GGGTTCAGCTGGGTTGGGTCGGATCAACTTGGGTTGGTCGGTTTTGGGTA
CTGAAATGTGCCCTGTCGATTTCACGTGTTCGTACCACGGGGTACATTAG
GAAAGGGCACATAGCAGGTCTCCACCCACGGGGGTGTTGGGATACCTCTG
TCGCGACACGACACGGACACTACCATGTGATATTGCGTGGTCTCGCAAAG
TTTGTGCGACTTGGGGGCGCCATTTCGAACCTAGCTGCGCTGTAAGTTGT
TGTAATATCGGTCGCCGAACGCGCCACGAAGATGGCCGATCTGAATGTAA
TGTTTGTGCACACATCTGGTTGTATGGGACGAACCATCCCACTGCAACCA
ACATGAATGCGAATATTGGAACAGGCACACAGCGCGTCGTACCAAGTCGC
GGGGCGAGGTGGAGATGAAACAATGCGTCAAGTTCCCCAAACGGCACACA
CGCACGTGGTAGGGCAAACACATGCACTAGCATGCATAGAAAATGAAACC
CTAACAACGCAACACCACACAGCGGAATATGAGATGGAACCCTTGGTAGT
TCAAGCCAAATCATGGATGAACCAAACCCCCATGCTCCCACAGACACAAA
CCATACACACAAACTCGTCGGTTCAGCCGGGAAGCGCGGTCGAAGCTAAC
AATGAGAAAGACACACGCGCGCGTGCGTTTGAACAAAAAACACATCTTGG
TTAGAATGTGACAATTTATCCACGGCGGTCGACCCTCCGTTTGCTACAAT
AGTCGTCCCAACGATTTTACTAGGCGATTCACAACGATGCCTCCTAGTCT
ACTCCTTCTCAAGCCCAAAATAGAGCCAGAGGCTCGGCACGAAGTAGCAG
GAACTTTTTCCGCACGGACAAAACGATTGGAGCGGGGGCGGG
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Coding sequence (CDS) from alignment at chr_00:11072478..11075569+

>Ec-00_007020.1 ID=Ec-00_007020.1|Name=Ec-00_007020.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=552bp|location=Sequence derived from alignment at chr_00:11072478..11075569+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGTCATCCTTAACCATGCGTTCCGGGACTTCGACCTGATCCGGCCCGG
CAGAGACCCGAAGCGCTGCCCAATGTGCAACCGCGAGGTGGTGCCGAGCA
CGTGTGCCTTCACCGACTGCACGTGGAGGTACAAGGGGCGGAAGGCCGGG
GAGACCAACGTCCTGGTCGGCATGTGGAAAGAGGCCGGCGACAGCTACCA
CCGCTTCGAGGAAGGGGGTGAGGTGCAGTGGGACAGGCTGCTCATCCAGG
TCAGGCCCCTGCTCAAGCTCGAGCAACGTGTCCCTTCCGCACCACCGGCG
GACGAGAGGATGGAGCGTCCCAACACGACAGCCAATACCGCGACGTCAAC
CGTAGCAGTCGTGATCGACCACACGTGGAGTCGATGCACGAGGTGCACGG
ATTGTTCCGCGTTCGGGGCAACCCCTGCGTCCGACGAGACGGTCCTGGAT
TGTGGCCACCGGTTCCACACCAGGTGCCTCGCGGGCTGGGAGCAGGGCTC
GATGATCGTCTGTCCCATCTGCCGGGAAGAGTCGTCGCCGCTGCCTCAGT
AG
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Synonyms
The feature 'Ec-00_007020.1' has the following synonyms
Synonym
Esi0529_0011
Esi_0529_0011