Ec-00_007010.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_007010.1
Unique NameEc-00_007010.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length64
Homology
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BLAST of Ec-00_007010.1 vs. uniprot
Match: A0A6H5KZP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP2_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 1.780e-5
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 3 
Query:   69 ALLQGPLLTKLPEHTRPTST-----AMAAETIVAAHCLDSIDVPPL 191
            A LQGP LTKLP+HT PT           +TIVAAHCLDSID+PPL
Sbjct:   65 AALQGPPLTKLPKHT-PTERHNNGPRAPLQTIVAAHCLDSIDLPPL 109
The following BLAST results are available for this feature:
BLAST of Ec-00_007010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KZP2_9PHAE1.780e-563.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:11067276..11070177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length192
Hectar predicted targeting categoryother localisation
Gene idEc-00_007010.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_007010Ec-00_007010Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 11067276..11070177 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007010.1.1Ec-00_007010.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11067276..11067329 +
Ec-00_007010.1.2Ec-00_007010.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11069671..11069759 +
Ec-00_007010.1.3Ec-00_007010.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11070129..11070177 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007010.1CDS:Ec-00_007010.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 11067276..11067329 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_007010.1Ec-00_007010.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 11067276..11070177 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_007010.1 ID=Ec-00_007010.1|Name=Ec-00_007010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=64bp
MGALLAETNAPCPLFVHYSARILLFFKVHFSQSSPSIPARPAQPWPQRRL
WQHTAWIPSMCLP*
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spliced messenger RNA

>Ec-00_007010.1 ID=Ec-00_007010.1|Name=Ec-00_007010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=192bp|location=Sequence derived from alignment at chr_00:11067276..11070177+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCGCTCTTGGCAGAGACGAACGCTCCTTGTCCGCTATTCGTTCA
CTACAGTGCACGGATACTGCTCTTCTTCAAGGTCCACTTCTCACAAAGCT
CCCCGAGCATACCCGCCCGACCAGCACAGCCATGGCCGCAGAGACGATTG
TGGCAGCACACTGCCTGGATTCCATCGATGTGCCTCCCTTGA
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protein sequence of Ec-00_007010.1

>Ec-00_007010.1 ID=Ec-00_007010.1|Name=Ec-00_007010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=64bp
MGALLAETNAPCPLFVHYSARILLFFKVHFSQSSPSIPARPAQPWPQRRL
WQHTAWIPSMCLP*
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mRNA from alignment at chr_00:11067276..11070177+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_007010.1 ID=Ec-00_007010.1|Name=Ec-00_007010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2902bp|location=Sequence derived from alignment at chr_00:11067276..11070177+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGGCGCTCTTGGCAGAGACGAACGCTCCTTGTCCGCTATTCGTTCA
CTACGTAAGGGTGTGCATATTCGTATCACCTTGACAAAGGGCACTCTAAT
TTCGCTTGCTGCTTGTTTCCGGTTGATCAAATTTGGCTGCACCACAACGG
CAGCCCACCTGCCCAACACCAGCTGTCCGAGGATGTATTGGTGCAGGCTA
ACAGTCCTCCTGTGTTTTTATCCTGTGAAGATCTATTCTCGAGTTTTATA
TCACGAGAGTTTTCCACCAAAAATGTACCAAAGCAGCGAAAGGCCCAAAA
AAGTCCCGCCGGTCCATGCATCATGTTTTAAATAACTCTCTTGTGATGAT
GGCAAGTTTCCGATAAGAACCGAATTTGATATAAGAACCGAATTTGACAT
CCGAAACAACACCACAAACAAGAACATGACATGTTCAATCAACACTGCGG
GTGCATGCGCGAAAACTTGCCTACAGCAGCAGAGTTTCACTTGGCCCGCT
GCGAAGTGTAAAAGAGCAAACGTAGGTACTGTTGTTGGACTTTTCGATGA
CACGAAGAGTCACAGCGATGTGAAATAGAGGAGGTGATGAAGCAAGAGGC
AAATAATATTTCAAACTGTCCACCTGGGTTGCAAGCCCCCACAAAAAGCT
TTTTTTTTTTTATTAAGACAAGGCATCGATCACGCGGAGCCCCTACAACG
GCCAGATTCCTATGGGACAGGCCGTTGTTCGTCAACAACTCCGGCTGTAG
TGGCGATCCAAAATGTTGAAACCTTCTAAAAGCATGTCTCTACAGCGTGG
TGCCATAAAAATATTGGACTGGATCGTTTTTTGAAGGTGTAAGAAGAGCG
TCGAAGGTCAATTTTCGGGGGAGGTTGGCTGAGAATCCAAACAAAATTGG
AGGTAGGGCAAACCAAATGTCTGCGCGTGTAGAACATGACATGCTTGAGG
TATCCTGCAGGTTTCATGGCACGTCGCCATCCATCTGTGTGAGGAGGACC
AGCAGTGACAAAGGTGTGCGCCAGATGGTGCGCTGGGCAACCCATCATGG
GAGCTCAAGCGGGGTATAATCGATCTTCGCGGAGCCCCTTTGTCATAGTT
TTTTTGCTTTTTGTGTGACTTGCAACCCGGGTGATGGGTTTCAGAATTGG
TTAGTCAGGCGTTGCCTGCGCGGAACGCGCCCCCGGGGTTTCAATCCAGT
TTTCACAACTTTGACCGTCAACCACACGCGCCACGGAGGCCTGCCGAGCT
CCGGGCACGAGCTTTGATATACCGACGAGCCTCCTGTGTGCCCCTCATAA
GGAATTGGGAGAAAAGATTCGATGCCACGAGAGAAAGAAATGCCGGAGCC
GGAACAGTGACCAGATCTTTATGTGCATACAAGGTCTCCCTTCGGGACGT
GGGTCTCAAGCCTCTCGCGGGCGACGCAAGACCACATGCGCGTTGCTCGA
AATAGCCGGTTTCCTTCCACTCACTGAACAGATTTCAACACATCCCTTTC
GACTGGGGTTATATCTCGAACGTGTCGTCTTCCTGTGAGATTATGTAAAC
TTTTTAGAAAACAAACGTAAGCTCCTTTGTACATGCCGCGTGTATTGTAG
ACTACCGTAAATGGCACAAGATAACGCACACCCTGGACCGATTTTCAAAT
CTCGATAGAGTCACAGCGCCAAAAACGGTGGCGTCGAACCTGTTTCGTCG
AGAGCTTTCCGACAGTGTATTGTTTCATTTATGCATCCTCTTCGTCATGG
TGCAATCGAGCTTTGAAGATTGCTCCAGGAGGTGTGTTATCTTGTGTCAT
ATACGGTACGTGTAGACCGCGGCTCTTTTTCCGTGTTCCTCTCGGTTACT
TGTACTCTTGTCCATTTTTTCTCGAAGCCGCCAGCAGGGACTGCTTGGCT
TGTAGCCAGTCGTTCCTGTTTCCACATGTTTGATGCTTGAGGATGCCCCA
TAAAGCCTGCATGATAAGATGTAGAGTTGATTCTTGCCTCAATCAAGCTC
GAGTAGGAGGGCAATCAAGGAGGTGTTTCCTCTTTGGGATTTGTTTTACA
GATCACAGTATACAGATCACAGTAGTCTACTTAGGTCAGGTTGGCGCCAC
GTTCGGGTGAGCTTTGTGTGTGCAAGCAAGGATCGCTATCCCTACGCTCG
GCGCTTATGTGCGAAATTGAACTGAAGTAGGGTGTAGTGAACGTTCAGAC
GTCTTAGCGTATGTAGTACTTTGAAGAGAGGCCCACGCTTGTTGTATCCA
CGCACCTCTAACGATGGAACCCACGCCGGCCTCTCCTCGTCTCCCTGGCA
TCTTCGTGCTATCCAAGAAGTAGGTCAGCAATGCCTTTCTCTTCAGTCTC
TTACGGCGCACGCACGCTTGCTCTTTCCGTTTTTTTGTCTGACAGAGTGC
ACGGATACTGCTCTTCTTCAAGGTCCACTTCTCACAAAGCTCCCCGAGCA
TACCCGCCCGACCAGCACAGCCATGGCCGCAGAGGTGAGACGGACACGGA
CATTTCTCGAAAGAAAGACTTGAACAGGTGAAGTTTGTGGATGGGTGATG
GGTTCTTTTATCGTTTCCCATCCGACCACGACGCTCTCCTCGGTTCACCA
GACCGATTGGTTTCGCTCCCATATGTCCCTCCGCGGTGAACAAAGCTACT
GCCTCACCCATTTCGAAGAATTCTTACAGGATGCATCACATACTTGCCAG
AATTACAGGAAGTTCTTTTCTGTCGAATAGTGTACGAGATAGTATAGAAC
AAAAAGCGAAGTAGGATAGATCCATGCGTCTTTTCTGCCTTGGTTCCAGA
TGATACCTACACGCACGCACTGCACGAAACCCACTTTCCCGGCTCCTCTT
CAGACGATTGTGGCAGCACACTGCCTGGATTCCATCGATGTGCCTCCCTT
GA
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Coding sequence (CDS) from alignment at chr_00:11067276..11070177+

>Ec-00_007010.1 ID=Ec-00_007010.1|Name=Ec-00_007010.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=192bp|location=Sequence derived from alignment at chr_00:11067276..11070177+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGGCGCTCTTGGCAGAGACGAACGCTCCTTGTCCGCTATTCGTTCA
CTACAGTGCACGGATACTGCTCTTCTTCAAGGTCCACTTCTCACAAAGCT
CCCCGAGCATACCCGCCCGACCAGCACAGCCATGGCCGCAGAGACGATTG
TGGCAGCACACTGCCTGGATTCCATCGATGTGCCTCCCTTGA
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Synonyms
The feature 'Ec-00_007010.1' has the following synonyms
Synonym
Esi0529_0009
Esi_0529_0009