Ec-00_006940.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_006940.1
Unique NameEc-00_006940.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length112
Homology
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BLAST of Ec-00_006940.1 vs. uniprot
Match: D7G3S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S5_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 4.260e-69
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 2 
Query:   62 MTFSLWNGHDSVDLETPKAPQRERTRSSGSCRTPVPGSPSIVFLKAPVVLQRTPGEKTKLLPSQTQQRPESHASKQIKRCQLVAVVLISLVTAAVIILFLAGDPRTDNRRR 394
            MTFSLWNGHDSVDLETPKAPQRERTRSSGSCRTPVPGSPSIVFLKAPVVLQRTPGEKTKLLPSQTQQRPESHASKQIKRCQLVAVVLISLVTAAVIILFLAGDPRTDNRRR
Sbjct:    1 MTFSLWNGHDSVDLETPKAPQRERTRSSGSCRTPVPGSPSIVFLKAPVVLQRTPGEKTKLLPSQTQQRPESHASKQIKRCQLVAVVLISLVTAAVIILFLAGDPRTDNRRR 111
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BLAST of Ec-00_006940.1 vs. uniprot
Match: A0A6H5KEN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEN3_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 9.130e-54
Identity = 92/105 (87.62%), Postives = 96/105 (91.43%), Query Frame = 2 
Query:   62 MTFSLWNGHDSVDLETPKAPQRERTRSSGSCRTPVPGSPSIVFLKAPVVLQRTPGEKTKLLPSQTQQRPESHASKQIKRCQLVAVVLISLVTAAVIILFLAGDPR 376
            MTFSLWN HD VD+ETPKAPQRERT SSGSC+TPVPGSPSIVFLKAPVVLQR PGE TKLLPS+TQQRPE +ASKQIKRCQLV VVLISLVTAAVIILFLA D R
Sbjct:    1 MTFSLWNSHDGVDVETPKAPQRERTHSSGSCKTPVPGSPSIVFLKAPVVLQRPPGEHTKLLPSETQQRPECNASKQIKRCQLVVVVLISLVTAAVIILFLADDGR 105
The following BLAST results are available for this feature:
BLAST of Ec-00_006940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3S5_ECTSI4.260e-69100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEN3_9PHAE9.130e-5487.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:10999249..11002893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length971
Hectar predicted targeting categorysignal anchor
Gene idEc-00_006940.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_006940Ec-00_006940Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 10999249..11002893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006940.1Ec-00_006940.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 10999822..11002831 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006940.1.3Ec-00_006940.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10999249..10999853 -
Ec-00_006940.1.2Ec-00_006940.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11001591..11001691 -
Ec-00_006940.1.1Ec-00_006940.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 11002629..11002893 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0069403UTR:Ec-00_006940.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 10999249..10999821 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006940.1CDS:Ec-00_006940.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 10999822..10999853 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0069405UTR:Ec-00_006940.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 11002832..11002893 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_006940.1 ID=Ec-00_006940.1|Name=Ec-00_006940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=112bp
MTFSLWNGHDSVDLETPKAPQRERTRSSGSCRTPVPGSPSIVFLKAPVVL
QRTPGEKTKLLPSQTQQRPESHASKQIKRCQLVAVVLISLVTAAVIILFL
AGDPRTDNRRR*
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spliced messenger RNA

>Ec-00_006940.1 ID=Ec-00_006940.1|Name=Ec-00_006940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=971bp|location=Sequence derived from alignment at chr_00:10999249..11002893- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GACGTTTGCTGGGTGACTGCGCGACTGCTACTAACAAGCCTCAGAGCCCA
GGGCGTAGCTTCATGACGTTCTCGTTGTGGAACGGCCATGATAGCGTGGA
TTTGGAGACGCCGAAAGCACCGCAACGGGAGCGCACGCGCAGCAGCGGCA
GTTGTAGGACACCCGTTCCAGGCAGCCCCAGCATCGTGTTCCTCAAGGCT
CCAGTTGTTCTCCAGAGGACGCCTGGGGAGAAGACGAAGCTTCTGCCGAG
CCAAACGCAGCAGCGGCCCGAGAGCCACGCGAGCAAGCAGATAAAGAGAT
GCCAGCTGGTGGCGGTGGTTTTGATATCTCTCGTCACGGCAGCTGTGATC
ATCTTGTTTTTGGCAGGTGACCCACGAACAGACAACAGACGGCGGTGACT
GAGGACCGACCTTGTTTTCTCCCTCGGCGGCACTGCTGTAGTCTGCTGGC
GTCGTAATGCGGGAGTTCGTAATGTGGGAGTTCCTTTAGGACTGGAAACG
CTGCCACCGGAAAACTCGATGTTGTTTAGCCTACATGTGTCGTAGGCGAT
GCGTGTCTGCGTTTGTTTAACTGTGGTTGTAACCTTGATTTACAGAATCG
TCCTCTACTATATATACAACACCATGGTTTTTGAATGCGGTATATTGCAG
GAGCGCAGCTCCTACAGCAGATATGTTCCGTGTTGACCGGTTGGTTTTTG
TGGTTGGTTTCGTTGATAGAGCTGCATCGAGTTGTACTTAGATACAATGC
TTGGTGAGGGACGTAGACTGCACTGGGAATTTGAGGCGGGACACTTACAC
GGTTTAAGGACCGCCGACGCGAAACACGCAGCTTGAGGACACGTCCTTCA
TTGAGCGCGTAAACTAGATGTAGAATGGTAGGGCAGGTTGCGAGCGCTGG
TATTGCCTCGAAAAGTAAAAGAACAGAGAAATCCGCGCTGCGGCTGCTGC
CGCTGCCGCTGCCGCCGCCCT
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protein sequence of Ec-00_006940.1

>Ec-00_006940.1 ID=Ec-00_006940.1|Name=Ec-00_006940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=112bp
MTFSLWNGHDSVDLETPKAPQRERTRSSGSCRTPVPGSPSIVFLKAPVVL
QRTPGEKTKLLPSQTQQRPESHASKQIKRCQLVAVVLISLVTAAVIILFL
AGDPRTDNRRR*
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mRNA from alignment at chr_00:10999249..11002893-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_006940.1 ID=Ec-00_006940.1|Name=Ec-00_006940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3645bp|location=Sequence derived from alignment at chr_00:10999249..11002893- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GACGTTTGCTGGGTGACTGCGCGACTGCTACTAACAAGCCTCAGAGCCCA
GGGCGTAGCTTCATGACGTTCTCGTTGTGGAACGGCCATGATAGCGTGGA
TTTGGAGACGCCGAAAGCACCGCAACGGGAGCGCACGCGCAGCAGCGGCA
GTTGTAGGACACCCGTTCCAGGCAGCCCCAGCATCGTGTTCCTCAAGGCT
CCAGTTGTTCTCCAGAGGACGCCTGGGGAGAAGACGAAGCTTCTGCCGAG
CCAAACGCAGCAGCGGTAAGACGAGACCTATCATTAGAGCGTTGGTTGTG
CCATTCACATGCATGTTCAGGTGTGGTGCATGCCTGAACATGTATTATTA
TAGATAGTGTTCCGGAGGGCACGTACACCGGGTTCAACTTCACCTCCTCG
CGTTGGAACTCGTATAACGAGTTTTATGCGGTTGGCAGCTCCACGCAAGT
TGCCTCATTTGGTTAGTGTATGTATTGTTCCATCGCTCGATCGGTCAATC
GCCGGCACTGGTTGTTTGGATAGCCTTCAGCTGTGAGCAAGCCCCTCCCT
GCAAACTACATTTTTATATTTTTATTCCGAAAGAACGTAGGTGCGCGTAC
ACTGTATGGATGTGCATACAGCAGTACGTACACACGCCGCTCTACTCTTC
TACTCCGAGTACTGCTGGAAGTGCTTCATCATCTAACTACGACATTGACG
CGGATGCCCGTCGTATAGTACGCACACAGTACTTCATGTACCACTGGCTG
CCTGTGGGACCTGGAAAATCGTCGTTTAGTGCGCATCTCTTTCACGGATA
TGCATACTTGTAGTCTTCGTCTCCATACATTGCAAACACTACCCGTGGAT
ACCACATGTCTGTGAAGGCAGGGTTTGGCTGTGGGCAATGGGCAAATCGA
ACGTTTATCGGACCTGGAGCGTAACTCGTCGTGGGTTCGTGGTGGTCGCC
CGACACCCTGGTTTGCGGCCTATCTCTCTGCCTTCTTGTGTCACCCCGCC
CCTTAATAAGGAATCGGGTTGCTCAACAACTTTCTCACCTTTCGAACACT
TCCTTCCGTGGGTGTTTGGCGCATGTATGCATATGAGCTATTATACTCAC
TTTTCGCACCGATCGTACCTCTGCACCATTTCTTCCTTTGTCGAAAATAG
TCTAAATATTAATTCGCGAATTTGTCGGCGTGATCCCTTCCTGGATTCGC
AGGCCCGAGAGCCACGCGAGCAAGCAGATAAAGAGATGCCAGCTGGTGGC
GGTGGTTTTGATATCTCTCGTCACGGCAGCTGTGATCATCTTGTTTTTGG
CAGGTGAGCGGGGCGCGGGTGTTCCTTTGTTGTTCGAGCTGCCTTACAGC
GGTGCGTTTCTTCTGTTGATGCCAAAATACAGCCAGGGGCCCACGATAGT
GCAGGCGCGTGCCAGGCTCATTAACCCGAATATCAACAACGGGCACCCAC
GGTGCTGTCAAGGATGGGCGCGGAAGGCGCACTATCCTCTGATGAGTGCG
GGTCCAGAACTATACACACCATTTGGCGAGTTGAGGGTAAGGCGTGCGTG
GCTGTGTGCACCCGTCACAACCAATGGGGTGGGCGAAGGGGGCACTTCAG
TTTGTGGCAACAATGTGCGTCCGAAAAGATGCACCCCGTAGTTGCGGGAT
CCCGAGCCCCTTCCTTCACGAGCAGTAAGGGCGCATTGTGGCGGGCAAAG
CACAGCATCTACTGCCGTGGGCAGCGTGCAGCTGTATCCTAGAGTAATGA
CCACAAATAGTTGTCTTATTCTATTTCTTCATTACACCGGTAGCTCATAA
CGGCATCCAGCCCATAGTGACAAGCAAGAGGGCCAGGTAAACAACACAGA
TGAATGCAGAACAAACCTGATGGGTAAGTTTTTTGATAAGGTGACAAAAT
GCAAAGTACTACAGACTCGAGCTGGACCCCAGACACAAAAAGAAGAAAAC
ACGAAAGGGGGCGGGACGCTCTTCAAGCATAAACTGGAGAGGAGCAGGAA
GAGGTCGCGCCACGCGCGATTCTCAGCAGCCCCCAGTGCCGAACACGTTT
GTAATCTGCGGATGCTTGAAATGTCGGGGAAACGCACGCGTGTGGCCGTT
AGTGGACTGAAGAGCTCTACTGGCAGCTGGTATTTTTCTCCAAGTCGACC
ATTCCCCGGGGTCGAGGATGGTGTGAGTGCTAAGGAAGATGGAGCTGGTT
GGGGGGCTTCAACGCCAACCTTGAGGTTGAACGTGACGATTGAGGCTTGG
GTTTCACCGGAAAAGGGCTTTCATGTACATGGAATACGGTCAAGTAGCAT
ACATCGCACGTCGTGCGTACTAGTTTGGACGCGTGGGAATGCTACCACGC
GCTTCTAAATAGCTTGAAAGTATGTTGCAGCACCACCAACCGAGAGCTAG
TCCTGCGCCAGTAGAGCGCCGGCCGTTGACAACGGAAGCGCCCCCAGCGT
GCGCGGTGCCACCTTTCTTTCGAACATTCTTTGCGGGGTCTACGTGTAGG
TGGGGATATTTTTCACGCCCGCATAAAGAAGCCGAAATCAAACCATTGAC
TATAATAATTAGACTCGTCACTGACTAGTCTAATGGTTTGGTTTCGGCTT
CTATAAAAGTTAGTCGTGGGGTTCGTGAGCCCTGTCACTTTCACCTCCGA
GGAGGGTGACTCCCCTTACCAGCGCTACTATCCGTCCAGTCTTTATTTCG
TTCATTTCGCTCGCCACCCACATCCTGCAGAATGTTCCAGGGTCCACGAG
TCCTTCCGTCACCCATACTCTGGCCGAGAGTACCCAGGGTCTCAGGACAA
AAAACACTTCAAAGTGTCCAGCCTGGGCCTCAGCTTCAACTCCGCAGCAC
GCGGATGTCTAGACGCTAGTGTATACGATGCTGAGGCGCATACCCTTGGA
CTTGAATCACCCCCTGTCAGGCGCGGGTGTGAGTGCGGGTGACGGTGCTT
CAGTGCGGTACACGATTGTGCTTTTTGAGTCCAACCCGTTTGAAGATTCC
GTCCGTGCTTTCTTCGACTTCCCCAACCATTTGACCTCAGGTGACCCACG
AACAGACAACAGACGGCGGTGACTGAGGACCGACCTTGTTTTCTCCCTCG
GCGGCACTGCTGTAGTCTGCTGGCGTCGTAATGCGGGAGTTCGTAATGTG
GGAGTTCCTTTAGGACTGGAAACGCTGCCACCGGAAAACTCGATGTTGTT
TAGCCTACATGTGTCGTAGGCGATGCGTGTCTGCGTTTGTTTAACTGTGG
TTGTAACCTTGATTTACAGAATCGTCCTCTACTATATATACAACACCATG
GTTTTTGAATGCGGTATATTGCAGGAGCGCAGCTCCTACAGCAGATATGT
TCCGTGTTGACCGGTTGGTTTTTGTGGTTGGTTTCGTTGATAGAGCTGCA
TCGAGTTGTACTTAGATACAATGCTTGGTGAGGGACGTAGACTGCACTGG
GAATTTGAGGCGGGACACTTACACGGTTTAAGGACCGCCGACGCGAAACA
CGCAGCTTGAGGACACGTCCTTCATTGAGCGCGTAAACTAGATGTAGAAT
GGTAGGGCAGGTTGCGAGCGCTGGTATTGCCTCGAAAAGTAAAAGAACAG
AGAAATCCGCGCTGCGGCTGCTGCCGCTGCCGCTGCCGCCGCCCT
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Coding sequence (CDS) from alignment at chr_00:10999249..11002893-

>Ec-00_006940.1 ID=Ec-00_006940.1|Name=Ec-00_006940.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=336bp|location=Sequence derived from alignment at chr_00:10999249..11002893- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGACGTTCTCGTTGTGGAACGGCCATGATAGCGTGGATTTGGAGACGCC
GAAAGCACCGCAACGGGAGCGCACGCGCAGCAGCGGCAGTTGTAGGACAC
CCGTTCCAGGCAGCCCCAGCATCGTGTTCCTCAAGGCTCCAGTTGTTCTC
CAGAGGACGCCTGGGGAGAAGACGAAGCTTCTGCCGAGCCAAACGCAGCA
GCGGCCCGAGAGCCACGCGAGCAAGCAGATAAAGAGATGCCAGCTGGTGG
CGGTGGTTTTGATATCTCTCGTCACGGCAGCTGTGATCATCTTGTTTTTG
GCAGGTGACCCACGAACAGACAACAGACGGCGGTGA
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Synonyms
The feature 'Ec-00_006940.1' has the following synonyms
Synonym
Esi0526_0002
Esi_0526_0002