Ec-00_006500.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_006500.2
Unique NameEc-00_006500.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length153
Homology
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: D7G3D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D7_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 5.330e-65
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 3 
Query:  345 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQSSTSAHHT 668
            MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQSSTSAHHT
Sbjct:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQSSTSAHHT 108
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: A0A6H5JT55_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT55_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.640e-36
Identity = 76/120 (63.33%), Postives = 89/120 (74.17%), Query Frame = 3 
Query:  213 MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAIHECPCGRPMHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHP---AGRKKPETGGKGKGRQRTA 563
            M RFLP  GG   T   KKTCGEPTC  +SLLITA+H+CPCG+PMH FCGRGIG+EG+GQQR CTDCQ+RT  G IGT +SPMEV+S  D+E++SS     AG K+ E   KGK  QRTA
Sbjct:    1 MDRFLPSIGG--PTHAAKKTCGEPTCAMRSLLITAVHQCPCGQPMHGFCGRGIGEEGFGQQRECTDCQRRTTTGKIGTGTSPMEVNSSSDNEDNSSRTRQRAGGKESEFARKGKRPQRTA 118
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.140e-36
Identity = 91/173 (52.60%), Postives = 107/173 (61.85%), Query Frame = 3 
Query:  213 MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAIHECPCGRPMHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSH---PAGRKKPETGGKGKGRQRTA------------------ETNSQRRSGCSLSSRSEVALKERRLLQSSTSAHHT 668
            M RFLP TGG S+ +  KKTCGEPTC  +SLLI A+H+CPCG PMHAFC RGIG+EG+GQQR C DCQ+RT  G IGT ++PMEVDS  D+E+  S    PAG K+ ET  KGK  QRTA                  +  S ++SG  LS RS   L    LLQS TS   T
Sbjct:    1 MDRFLPSTGGPSNAA--KKTCGEPTCTMRSLLIAAVHQCPCGWPMHAFCDRGIGEEGFGQQRECRDCQRRTTTGKIGTGTNPMEVDSSSDNEDMKSRTRQPAGGKESETARKGKRPQRTAGRTQVPRGWSAEAPQGTVQVESPKKSG--LSRRSRGGLSGAWLLQSGTSVLRT 169
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: A0A6H5KEU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.510e-33
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 3 
Query:  213 MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAIHECPCGRPMHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 494
            M+RFLP  GGSS  + G + CGEPTC+ KS L++A+H+CPCGR MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEVD+ ++ ++S
Sbjct:    1 MERFLPSAGGSS--AAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDS 92
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: A0A6H5JYC6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.220e-31
Identity = 66/113 (58.41%), Postives = 84/113 (74.34%), Query Frame = 3 
Query:  213 MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAIHECPCGRPMHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSS--HPAGRKKPETGGKGK 545
            M+RFLP  GGSS  + G + CGEPTC+ KS L++A+H+CPCGR MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEVD+ ++ ++S S   P   ++P  GGKGK
Sbjct:    1 MERFLPSAGGSS--AAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRGIGEEGYGQQRECSDCQKSKGGAQAGSSSSPMEVDAEENEQDSRSTTQPFRVEEPSVGGKGK 111
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: A0A6H5K408_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K408_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.520e-30
Identity = 56/85 (65.88%), Postives = 67/85 (78.82%), Query Frame = 3 
Query:  213 MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAIHECPCGRPMHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEV 467
            M+RFLP  GGSS  + G + CGEPTC+ KS L++A+H+CPCGR MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEV
Sbjct:    1 MERFLPSAGGSS--AAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEV 83
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: A0A6H5KGD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.290e-30
Identity = 56/85 (65.88%), Postives = 67/85 (78.82%), Query Frame = 3 
Query:  213 MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAIHECPCGRPMHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEV 467
            M+RFLP  GGSS  + G + CGEPTC+ KS L++A+H+CPCGR MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEV
Sbjct:    1 MERFLPSAGGSS--AAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEV 83
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.010e-29
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 3 
Query:  213 MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAIHECPCGRPMHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 494
            M+RFLP  G SS  + G + CGEPTC+ KS L++A+H+CPCGR MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEVD+ ++ ++S
Sbjct:    1 MERFLPSAGESS--AAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDS 92
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: D8LM87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM87_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 9.720e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:  213 MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAI 320
            MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAI
Sbjct:    1 MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAI 36
[Close]
BLAST of Ec-00_006500.2 vs. uniprot
Match: A0A6H5L7T1_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.520e-10
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 3 
Query:  345 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSE 488
            MH FCGRGIG+EG+GQQR  T CQKRT  G IGT +SPMEVDS  D+E
Sbjct:    1 MHGFCGRGIGEEGFGQQRERTYCQKRTTSGKIGTGTSPMEVDSSGDNE 48
The following BLAST results are available for this feature:
BLAST of Ec-00_006500.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G3D7_ECTSI5.330e-65100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT55_9PHAE1.640e-3663.33HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JEK6_9PHAE2.140e-3652.60DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEU0_9PHAE4.510e-3361.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYC6_9PHAE1.220e-3158.41DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K408_9PHAE2.520e-3065.88Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD7_9PHAE6.290e-3065.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8A7_9PHAE3.010e-2960.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM87_ECTSI9.720e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L7T1_9PHAE1.520e-1070.83HTH CENPB-type domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:10387152..10388574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length672
Hectar predicted targeting categoryother localisation
Gene idEc-00_006500.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_006500Ec-00_006500Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 10387152..10388574 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006500.2.2Ec-00_006500.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10387152..10387329 -
Ec-00_006500.2.1Ec-00_006500.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10388081..10388574 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006500.2CDS:Ec-00_006500.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 10387152..10387329 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0065005UTR:Ec-00_006500.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 10388362..10388574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006500.2Ec-00_006500.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 10387152..10388361 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_006500.2 ID=Ec-00_006500.2|Name=Ec-00_006500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=153bp
MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAIHECPCGRPMHAFCG
RGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAG
RKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQSSTSAH
HT*
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spliced messenger RNA

>Ec-00_006500.2 ID=Ec-00_006500.2|Name=Ec-00_006500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=672bp|location=Sequence derived from alignment at chr_00:10387152..10388574- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ACCCCGCTTTAAGGACGCTCGTAGTAAGGAAACCCCCCGCTTAAAGGACG
ACTTTTTTCCAGAACCGAGGGGGCCGACAGACAGTACAAATAAAGGGGGA
TATACAGTTTCTATTCTGCGAACCCCCCTTTTTTCACCTGTGGAGTGCTT
TGTTTGGTTCATCACACGCGCAACAATATAGAGCGCGGTCTGCTGCTGCT
GCTGTTGGTACACATGAAGAGATTCCTACCGCCTACCGGAGGTTCCTCTG
ATACAAGCACCGGCAAGAAAACATGTGGGGAACCAACGTGCAAGCACAAG
TCTCTGCTGATCACAGCAATCCACGAGTGCCCTTGCGGGCGGCCGATGCA
TGCCTTCTGCGGGCGAGGCATCGGGGATGAAGGCTACGGGCAGCAGCGAA
TGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCACCAGC
AGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGCTCGTC
GCACCCGGCCGGGCGCAAGAAGCCAGAGACTGGAGGGAAGGGGAAAGGGC
GTCAACGTACCGCGGAGACAAACTCTCAACGGCGCAGCGGTTGCAGCTTG
TCATCGAGATCCGAGGTGGCGCTAAAAGAAAGGCGGTTGCTGCAAAGTTC
AACGTCGGCACATCATACGTGA
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protein sequence of Ec-00_006500.2

>Ec-00_006500.2 ID=Ec-00_006500.2|Name=Ec-00_006500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=153bp
MKRFLPPTGGSSDTSTGKKTCGEPTCKHKSLLITAIHECPCGRPMHAFCG
RGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAG
RKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQSSTSAH
HT*
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mRNA from alignment at chr_00:10387152..10388574-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_006500.2 ID=Ec-00_006500.2|Name=Ec-00_006500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1423bp|location=Sequence derived from alignment at chr_00:10387152..10388574- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ACCCCGCTTTAAGGACGCTCGTAGTAAGGAAACCCCCCGCTTAAAGGACG
ACTTTTTTCCAGAACCGAGGGGGCCGACAGACAGTACAAATAAAGGGGGA
TATACAGTTTCTATTCTGCGAACCCCCCTTTTTTCACCTGTGGAGTGCTT
TGTTTGGTTCATCACACGCGCAACAATATAGAGCGCGGTCTGCTGCTGCT
GCTGTTGGTACACATGAAGAGATTCCTACCGCCTACCGGAGGTTCCTCTG
ATACAAGCACCGGCAAGAAAACATGTGGGGAACCAACGTGCAAGCACAAG
TCTCTGCTGATCACAGCAATCCACGAGTGCCCTTGCGGGCGGCCGATGCA
TGCCTTCTGCGGGCGAGGCATCGGGGATGAAGGCTACGGGCAGCAGCGAA
TGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCACCAGC
AGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGGTGATG
AGAGTGAATCGCGCCGCAGTCAGCAGTAGCAGTCAACAGTAGCAGTCAGC
AGCCAGCAGCCCTCGACCGAACGAACACCGTGCTGCTGCTGGGCATGAAG
CGACTCACGCGCCATGAAACACCACACGAAATATCACCGTTCCCACTCGC
ACATGATTTCTGCGTTCCTTTCTGTCATACATGAGGAGTTCGGCACAATC
TTGTGCGGGTGTTTTTTTGAAATCTCCCTGTGTGTGTGTGTGTGTGTGCG
TGTGTGTGTGTGTCGTGTGTGTCTGTCGGTGTGTCTGTGATACTGCTGTA
AAGCAAAAAAAAAAAAATTGAACACAAAAACCGTTCGCTCCCGCAGCTGT
TGGCATGGGAGCAAATGACTCGCTGCGCTGCCGTACCCGTGCTCGCACTT
CGACGGTGATATGCAGACTGTCGTGTTCGAGAGGTCTGCTGTATGTCATG
CAGGATTCACACTTGAAAGCTCGCTTGAAAAGTAGGCAATGTACACAACT
ACCTGCTGTGCGATATGTACATGGTGCTCCCAAAATCTGGAATGCTTGTG
TGCCTCTCTTGCCTCATTTCCATGCTGCCAGCACAGATATGTGCTCTCTC
CCTGGAAAGTCAGCGCAAGTTTTATTTGGCGCAATCTGCTGAACTATTTA
CCATGTGGATTCTCGCGTTCCTCCGTCAGCACAAGTGCCGACAACCTCCC
TTGACATCTCGACCTTCACTCGCCACTTTTTTCCCTTACGCCCAGCTCGT
CGCACCCGGCCGGGCGCAAGAAGCCAGAGACTGGAGGGAAGGGGAAAGGG
CGTCAACGTACCGCGGAGACAAACTCTCAACGGCGCAGCGGTTGCAGCTT
GTCATCGAGATCCGAGGTGGCGCTAAAAGAAAGGCGGTTGCTGCAAAGTT
CAACGTCGGCACATCATACGTGA
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Coding sequence (CDS) from alignment at chr_00:10387152..10388574-

>Ec-00_006500.2 ID=Ec-00_006500.2|Name=Ec-00_006500.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=459bp|location=Sequence derived from alignment at chr_00:10387152..10388574- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAGAGATTCCTACCGCCTACCGGAGGTTCCTCTGATACAAGCACCGG
CAAGAAAACATGTGGGGAACCAACGTGCAAGCACAAGTCTCTGCTGATCA
CAGCAATCCACGAGTGCCCTTGCGGGCGGCCGATGCATGCCTTCTGCGGG
CGAGGCATCGGGGATGAAGGCTACGGGCAGCAGCGAATGTGCACGGATTG
TCAGAAGAGAACGGATGAGGGCGGGATCGGCACCAGCAGCAGTCCCATGG
AGGTGGACAGTGGAGACGACAGCGAGAACAGCTCGTCGCACCCGGCCGGG
CGCAAGAAGCCAGAGACTGGAGGGAAGGGGAAAGGGCGTCAACGTACCGC
GGAGACAAACTCTCAACGGCGCAGCGGTTGCAGCTTGTCATCGAGATCCG
AGGTGGCGCTAAAAGAAAGGCGGTTGCTGCAAAGTTCAACGTCGGCACAT
CATACGTGA
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Synonyms
The feature 'Ec-00_006500.2' has the following synonyms
Synonym
Esi0507_0008
Esi_0507_0008