Ec-00_006500.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_006500.1
Unique NameEc-00_006500.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length109
Homology
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: D7G3D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D7_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 6.500e-67
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQSSTSAHHT 324
            MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQSSTSAHHT
Sbjct:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHPAGRKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQSSTSAHHT 108
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 9.200e-17
Identity = 62/129 (48.06%), Postives = 73/129 (56.59%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSH---PAGRKKPETGGKGKGRQRTA------------------ETNSQRRSGCSLSSRSEVALKERRLLQSSTSAHHT 324
            MHAFC RGIG+EG+GQQR C DCQ+RT  G IGT ++PMEVDS  D+E+  S    PAG K+ ET  KGK  QRTA                  +  S ++SG  LS RS   L    LLQS TS   T
Sbjct:   43 MHAFCDRGIGEEGFGQQRECRDCQRRTTTGKIGTGTNPMEVDSSSDNEDMKSRTRQPAGGKESETARKGKRPQRTAGRTQVPRGWSAEAPQGTVQVESPKKSG--LSRRSRGGLSGAWLLQSGTSVLRT 169
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: A0A6H5JT55_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT55_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.030e-16
Identity = 47/76 (61.84%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSSHP---AGRKKPETGGKGKGRQRTA 219
            MH FCGRGIG+EG+GQQR CTDCQ+RT  G IGT +SPMEV+S  D+E++SS     AG K+ E   KGK  QRTA
Sbjct:   43 MHGFCGRGIGEEGFGQQRECTDCQRRTTTGKIGTGTSPMEVNSSSDNEDNSSRTRQRAGGKESEFARKGKRPQRTA 118
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: A0A6H5JYC6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC6_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.350e-13
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENSSS--HPAGRKKPETGGKGK 201
            MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEVD+ ++ ++S S   P   ++P  GGKGK
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGAQAGSSSSPMEVDAEENEQDSRSTTQPFRVEEPSVGGKGK 111
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: A0A6H5KEU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU0_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.820e-12
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 150
            MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEVD+ ++ ++S
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDS 92
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: A0A6H5L7T1_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 7.120e-12
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSE 144
            MH FCGRGIG+EG+GQQR  T CQKRT  G IGT +SPMEVDS  D+E
Sbjct:    1 MHGFCGRGIGEEGFGQQRERTYCQKRTTSGKIGTGTSPMEVDSSGDNE 48
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: A0A6H5KEL4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEL4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.300e-11
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 150
            MHAFCGRGIG EGYGQQR CT+CQK       G+ SSPMEVD  D+ E S
Sbjct:    1 MHAFCGRGIGKEGYGQQRKCTECQKTAPGSRTGSPSSPMEVDDDDEQEES 50
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.170e-11
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS 150
            MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEVD+ ++ ++S
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEVDAEENEQDS 92
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: A0A6H5L464_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L464_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.390e-10
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEV 123
            MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEV
Sbjct:    1 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEV 41
[Close]
BLAST of Ec-00_006500.1 vs. uniprot
Match: A0A6H5K408_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K408_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.360e-10
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEV 123
            MHAFCGRGIG+EGYGQQR C+DCQK       G+SSSPMEV
Sbjct:   43 MHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPMEV 83
The following BLAST results are available for this feature:
BLAST of Ec-00_006500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G3D7_ECTSI6.500e-67100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEK6_9PHAE9.200e-1748.06DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JT55_9PHAE3.030e-1661.84HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JYC6_9PHAE7.350e-1357.97DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KEU0_9PHAE1.820e-1264.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7T1_9PHAE7.120e-1270.83HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KEL4_9PHAE4.300e-1166.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L8A7_9PHAE6.170e-1164.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L464_9PHAE1.390e-1073.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K408_9PHAE2.360e-1073.17Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:10387152..10388229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length327
Hectar predicted targeting categoryother localisation
Gene idEc-00_006500.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_006500Ec-00_006500Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 10387152..10388574 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006500.1.2Ec-00_006500.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10387152..10387329 -
Ec-00_006500.1.1Ec-00_006500.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10388081..10388229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006500.1CDS:Ec-00_006500.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 10387152..10387329 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006500.1Ec-00_006500.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 10387152..10388229 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_006500.1 ID=Ec-00_006500.1|Name=Ec-00_006500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=109bp
MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS
SSHPAGRKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQ
SSTSAHHT*
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spliced messenger RNA

>Ec-00_006500.1 ID=Ec-00_006500.1|Name=Ec-00_006500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=327bp|location=Sequence derived from alignment at chr_00:10387152..10388229- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGCCTTCTGCGGGCGAGGCATCGGGGATGAAGGCTACGGGCAGCA
GCGAATGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCA
CCAGCAGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGC
TCGTCGCACCCGGCCGGGCGCAAGAAGCCAGAGACTGGAGGGAAGGGGAA
AGGGCGTCAACGTACCGCGGAGACAAACTCTCAACGGCGCAGCGGTTGCA
GCTTGTCATCGAGATCCGAGGTGGCGCTAAAAGAAAGGCGGTTGCTGCAA
AGTTCAACGTCGGCACATCATACGTGA
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protein sequence of Ec-00_006500.1

>Ec-00_006500.1 ID=Ec-00_006500.1|Name=Ec-00_006500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=109bp
MHAFCGRGIGDEGYGQQRMCTDCQKRTDEGGIGTSSSPMEVDSGDDSENS
SSHPAGRKKPETGGKGKGRQRTAETNSQRRSGCSLSSRSEVALKERRLLQ
SSTSAHHT*
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mRNA from alignment at chr_00:10387152..10388229-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_006500.1 ID=Ec-00_006500.1|Name=Ec-00_006500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1078bp|location=Sequence derived from alignment at chr_00:10387152..10388229- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATGCCTTCTGCGGGCGAGGCATCGGGGATGAAGGCTACGGGCAGCA
GCGAATGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCA
CCAGCAGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGG
TGATGAGAGTGAATCGCGCCGCAGTCAGCAGTAGCAGTCAACAGTAGCAG
TCAGCAGCCAGCAGCCCTCGACCGAACGAACACCGTGCTGCTGCTGGGCA
TGAAGCGACTCACGCGCCATGAAACACCACACGAAATATCACCGTTCCCA
CTCGCACATGATTTCTGCGTTCCTTTCTGTCATACATGAGGAGTTCGGCA
CAATCTTGTGCGGGTGTTTTTTTGAAATCTCCCTGTGTGTGTGTGTGTGT
GTGCGTGTGTGTGTGTGTCGTGTGTGTCTGTCGGTGTGTCTGTGATACTG
CTGTAAAGCAAAAAAAAAAAAATTGAACACAAAAACCGTTCGCTCCCGCA
GCTGTTGGCATGGGAGCAAATGACTCGCTGCGCTGCCGTACCCGTGCTCG
CACTTCGACGGTGATATGCAGACTGTCGTGTTCGAGAGGTCTGCTGTATG
TCATGCAGGATTCACACTTGAAAGCTCGCTTGAAAAGTAGGCAATGTACA
CAACTACCTGCTGTGCGATATGTACATGGTGCTCCCAAAATCTGGAATGC
TTGTGTGCCTCTCTTGCCTCATTTCCATGCTGCCAGCACAGATATGTGCT
CTCTCCCTGGAAAGTCAGCGCAAGTTTTATTTGGCGCAATCTGCTGAACT
ATTTACCATGTGGATTCTCGCGTTCCTCCGTCAGCACAAGTGCCGACAAC
CTCCCTTGACATCTCGACCTTCACTCGCCACTTTTTTCCCTTACGCCCAG
CTCGTCGCACCCGGCCGGGCGCAAGAAGCCAGAGACTGGAGGGAAGGGGA
AAGGGCGTCAACGTACCGCGGAGACAAACTCTCAACGGCGCAGCGGTTGC
AGCTTGTCATCGAGATCCGAGGTGGCGCTAAAAGAAAGGCGGTTGCTGCA
AAGTTCAACGTCGGCACATCATACGTGA
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Coding sequence (CDS) from alignment at chr_00:10387152..10388229-

>Ec-00_006500.1 ID=Ec-00_006500.1|Name=Ec-00_006500.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=327bp|location=Sequence derived from alignment at chr_00:10387152..10388229- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCATGCCTTCTGCGGGCGAGGCATCGGGGATGAAGGCTACGGGCAGCA
GCGAATGTGCACGGATTGTCAGAAGAGAACGGATGAGGGCGGGATCGGCA
CCAGCAGCAGTCCCATGGAGGTGGACAGTGGAGACGACAGCGAGAACAGC
TCGTCGCACCCGGCCGGGCGCAAGAAGCCAGAGACTGGAGGGAAGGGGAA
AGGGCGTCAACGTACCGCGGAGACAAACTCTCAACGGCGCAGCGGTTGCA
GCTTGTCATCGAGATCCGAGGTGGCGCTAAAAGAAAGGCGGTTGCTGCAA
AGTTCAACGTCGGCACATCATACGTGA
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Synonyms
The feature 'Ec-00_006500.1' has the following synonyms
Synonym
Esi0507_0008
Esi_0507_0008