Ec-00_006480.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_006480.1
Unique NameEc-00_006480.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length108
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_006480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:10313535..10316803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length324
Hectar predicted targeting categoryother localisation
Gene idEc-00_006480.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_006480Ec-00_006480Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 10311748..10324152 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006480.1.1Ec-00_006480.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10313535..10313665 +
Ec-00_006480.1.2Ec-00_006480.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10314419..10314490 +
Ec-00_006480.1.3Ec-00_006480.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10315039..10315113 +
Ec-00_006480.1.4Ec-00_006480.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 10316758..10316803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006480.1CDS:Ec-00_006480.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 10313535..10313665 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_006480.1Ec-00_006480.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 10313535..10316803 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_006480.1 ID=Ec-00_006480.1|Name=Ec-00_006480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=108bp
MLRCSSSIIRSFGTGTGCGYLVDADLPDLQACFNTAGRTSIASIDLRLMA
VEKLPVGMFDNLPNLSELMLGSSVAEAIPVGLFDNLKASLHVLSGVRCEE
RHFCLAK*
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spliced messenger RNA

>Ec-00_006480.1 ID=Ec-00_006480.1|Name=Ec-00_006480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=324bp|location=Sequence derived from alignment at chr_00:10313535..10316803+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACGCTGCTCTTCATCCATTATCAGGAGTTTTGGGACTGGGACGGG
ATGTGGATACCTGGTGGATGCCGATCTGCCCGATCTGCAAGCGTGCTTCA
ACACCGCTGGACGAACAAGCATCGCCAGCATTGATCTGCGCCTGATGGCT
GTGGAAAAGCTTCCCGTGGGAATGTTCGACAATCTTCCGAACCTGAGCGA
ACTGATGCTGGGCAGCTCGGTGGCTGAGGCGATCCCAGTCGGACTCTTTG
ATAACCTCAAGGCCTCGCTACACGTTCTGAGCGGCGTGCGCTGCGAGGAA
CGCCATTTTTGCCTTGCGAAATAG
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protein sequence of Ec-00_006480.1

>Ec-00_006480.1 ID=Ec-00_006480.1|Name=Ec-00_006480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=108bp
MLRCSSSIIRSFGTGTGCGYLVDADLPDLQACFNTAGRTSIASIDLRLMA
VEKLPVGMFDNLPNLSELMLGSSVAEAIPVGLFDNLKASLHVLSGVRCEE
RHFCLAK*
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mRNA from alignment at chr_00:10313535..10316803+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_006480.1 ID=Ec-00_006480.1|Name=Ec-00_006480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3269bp|location=Sequence derived from alignment at chr_00:10313535..10316803+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTACGCTGCTCTTCATCCATTATCAGGAGTTTTGGGACTGGGACGGG
ATGTGGATACCTGGTGGATGCCGATCTGCCCGATCTGCAAGCGTGCTTCA
ACACCGCTGGACGAACAAGCATCGCCAGCATGTAAGGGGGAGAGTGAGCC
ATTTGCTGTTCACTTGAACTCTCCAAACTTAGGGTAGGGTGGTTGACACC
GTCGCCAACCATGTGTTTTCTGTTGCCGGATATATTTTCGTAGGCCTCGC
TTGCCGAGGGGCAGCGACGGGAAGACATGTTCTCTGGTTCCGTCTCCGTC
CTAAACGCAACTCGGTCGAAGGTTTGATCAAGAGCTATGTAGTACATATA
TCTGTAGCTGCCGTCTGGTTCGGGCGTGGCGTAGTGCGGAACACTCATTT
TCCACCACACGGTGAGGTTCATGTTTGGGGCAAGTCTCTTCGCGGTTGCA
AATATCTTTCGGTGCTGGTTTTGATTTTCGTTCAGTTCGAGTATACGTGA
AGGTAAATGCCAACTTTTCGTGCCATTCTCCACGACCCCGGGAAAAAGGT
TGCTGATAGCAATATCGGCTGTCATGTTCCAGCCACCATCATTACACGTT
GTATCCTGTTGAAGGCGGTGATGAACAGACATTCCTATAACCTGGTAACC
ACGTCAAACCCCAGCGAAGCTGTGCGTTGGGTCTCTCGGCGGGCAGACAG
CTGGAGAGCGGGAAGCTCTACAGCACGCAACCCGACATGCATTAAGTCGA
CTCCATGACGCTGGGTTGCCGATATTCATTCATAACCCCAACATCGTCAA
CACCAAACACCGCCGGTGTTTGCGCGTGAGCGTCACTGGATTGATCGCGC
CTCTGTACCGTTCTACATTCCCGAATGACAACAGTGATCTGCGCCTGATG
GCTGTGGAAAAGCTTCCCGTGGGAATGTTCGACAATCTTCCGAACCTGAG
CGAACTGTAAGTGATCTGGAGCGTTGTTACGAAATACTACTACAGTAGAC
GATACAGTGCCGGCCCACCATTCGCTGATTGAGATCCCGGCGCAAACCCA
ATCAAACGGCGTTACCGCGCGTTGCCCACCAATCCTTGTCGGGTAAGGTC
CCTCAGAAATTAGTGCTGGTCACCATTGAAACAGGACTGGCTCGGCTAGG
GTAGTGTTACAACTGCGCCTTTTCCCACGAGGAAATTCTGTTTCTCAGTC
AGACAACTCCGAATCCTGCTGTATCTGTCCCTCACGCTGACATGATGGTG
AACCAGTCGGGTTGTTGTCAACGTTGCACGGCGTAACTCAAGGCATCGTT
CTTCTCCATCCACCGTACAACACTCTAACTCAAACCATTACAAGATGTTG
ACATGTGTATTGTCCCTTGTCTACAGTAGTAGTTTTCCTCGATCATATCT
TGCGCCTCAGGTTGGATCGGCGATGATGCCGACCTCTTCTTGTGGGAAGG
CTCATACTCCACGTGTCTATACCGTATGTGATATTTGCCGATTTCGTGTA
CAAGGATGCTGGGCAGCTCGGTGGCTGAGGCGATCCCAGTCGGACTCTTT
GATAACCTCAAGGCCTCGCTACACGTTCTGTGAGTATTGCCGGTAATCCA
CGCTCGTCAGCATAGCTCAACATGCTCCGATGACTAAATAATGGGGACGC
GTAGTTGGTGAACTCGGCGTGACATTTCATTCCTGAATTTTCCCGAAACT
GGGCTCCGACTCTATTTGCCAAATGTGTACCGCTTCCATGGAAGTATAAA
TCATCTTCCATGGAAGTTGGATCTACTTCTATGGACGCTGGTACCACTTC
TATGGAACCTATTTCACGTTTCGTACTTCCATGGAAGCACAAAACGACAC
TTCCATGGAAGAGATATTCACTTCCGTGGAAACAAAGAGATATTCACTTC
CATGGAACTAAGGATATGAAATGTGGATGTGCCACTTCCATGGAGAAGTT
GACTTCCCCGGAAGTCCAATGGACATCCCATGGAAATGGAACAGCTTCCA
TGGAACCGCTTCTATGGAACAGCTTTCATGGGATTCAGACCTTAGGCTTC
CATGGATCGTTTTCAAATCAGGCTTAGGGCAGCTTCCATGGCAGTATCCA
GCCTCGGGATCGCTTCCACGCTTCCAAGGACCTCCATGGAAGCTCTCTTC
GGGATTCGCGTTAGCGGTAGGGTGTGGGTTAGGGTGAGGGTTCGGGTAGG
GAAGCTGAAACGACCACATGCCTAGACGCTTCTGTGGACATTGCTTTAGG
TTAGGTTAGCAGTAGGAAGCTGGCAGTACCACATGCCGTAACGCTTCCGT
CGAAGTTGCTTTCATGGAAGTTTCGTTGCTTCCACGGAACTTGGTTTCTA
CCTCTGTCGCCCACGTACACGGAAGTTGCTGCATTGACGTTTTCGTGCTT
CCATGGAAGTACAGCAGAAACTCTGTCTAGCGACGAGCTTCCATGGAAGT
ACTACAGTACTCCCATTGAAGCTCGTCGTGCTTCCGTGGAAGTCCGAAAT
GCGACTTCCTTGGAAGCAACGAGCGGTTAATATCGGGCGCTTCCATGGGA
GCGGATCAACTTCCATGGAAGCGGATTAACTTCCGTGGAAGTAGTTTTAC
GCTTCCATGGAAGCATCATGGAAGCCGAAACCCGAAACAGACGAACAGAT
TCCATGGGAGTCAAGTTGACTTCCAGAAGCCATCTAACTTCCATGGAAGT
CGATACAGTCGTGGGCCCGGTTTAGCGGTCCATAGTGTCACGAATTTTTA
TAACCGCTATTCAGGGCATCGCCGCTAAACCACTTTAGCGGTCATTATCC
GCTTAACCAGGAGGCTTAATAGCGGTCGTGAACCGCTAAACCGGGAAAAG
GCCCATTTTTGCCCTACAATAACAGCGTGGAGAGCTGATATTGAGAGGGC
CATGCGTATCATTACAGCAGTCATACGAAGGTGCGGATGAACAAGTAACG
AGCTAATGAAGGACAACGCCGCAATCACATTCATTAATGATGCATTTGAA
TTCGCCAAAGCACAAAGATTATTCTCCCTTCTGGACTGTATGCCCCTCAT
CAAGACTGAAAATCGTTCGCGTCTCTAACGAAGTGAAGTAGGTGATGAGA
CAAACTTGTGACAACGCAATGACAATCAACCACGTGCTTGAGCATCTCAT
TTCTGCCATGTGTCCCGTATCGATCATTCTTCACCCAAAGCAACCTCTCT
GGTATCTGCCTTGCGCGCTGGAGGAGCGGCGTGCGCTGCGAGGAACGCCA
TTTTTGCCTTGCGAAATAG
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Coding sequence (CDS) from alignment at chr_00:10313535..10316803+

>Ec-00_006480.1 ID=Ec-00_006480.1|Name=Ec-00_006480.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=324bp|location=Sequence derived from alignment at chr_00:10313535..10316803+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTACGCTGCTCTTCATCCATTATCAGGAGTTTTGGGACTGGGACGGG
ATGTGGATACCTGGTGGATGCCGATCTGCCCGATCTGCAAGCGTGCTTCA
ACACCGCTGGACGAACAAGCATCGCCAGCATTGATCTGCGCCTGATGGCT
GTGGAAAAGCTTCCCGTGGGAATGTTCGACAATCTTCCGAACCTGAGCGA
ACTGATGCTGGGCAGCTCGGTGGCTGAGGCGATCCCAGTCGGACTCTTTG
ATAACCTCAAGGCCTCGCTACACGTTCTGAGCGGCGTGCGCTGCGAGGAA
CGCCATTTTTGCCTTGCGAAATAG
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Synonyms
The feature 'Ec-00_006480.1' has the following synonyms
Synonym
Esi505_0020
Esi_505_0020