Ec-00_006460.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_006460.2
Unique Name	Ec-00_006460.2
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	132

Homology

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BLAST of Ec-00_006460.2 vs. uniprot
Match: D7G349_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G349_ECTSI)

HSP 1 Score: 731 bits (1888), Expect = 3.730e-259
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 3

Query:  108 MLSCPPCPPLLMQHMPILVITDIMCRVGPIVHDRCQMAAPNEGVLPRVGEPDEHGMRKVDIPALAPLGNYFLGADQVSEPVPQEKCTQRNVYNLLRDAQTSPPVQRLDFGQLLSVSAWQDSEEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEEQTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQPANQCAKKRAELAVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGI 1211
            MLSCPPCPPLLMQHMPILVITDIMCRVGPIVHDRCQMAAPNEGVLPRVGEPDEHGMRKVDIPALAPLGNYFLGADQVSEPVPQEKCTQRNVYNLLRDAQTSPPVQRLDFGQLLSVSAWQDSEEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEEQTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQPANQCAKKRAELAVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGI
Sbjct:    1 MLSCPPCPPLLMQHMPILVITDIMCRVGPIVHDRCQMAAPNEGVLPRVGEPDEHGMRKVDIPALAPLGNYFLGADQVSEPVPQEKCTQRNVYNLLRDAQTSPPVQRLDFGQLLSVSAWQDSEEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEEQTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQPANQCAKKRAELAVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGI 368

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BLAST of Ec-00_006460.2 vs. uniprot
Match: A0A6H5JVZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVZ9_9PHAE)

HSP 1 Score: 602 bits (1552), Expect = 8.210e-207
Identity = 305/355 (85.92%), Postives = 323/355 (90.99%), Query Frame = 3

Query:  147 HMPILVITDIMCRVGPIVHDRCQMAAPNEGVLPRVGEPDEHGMRKVDIPALAPLGNYFLGADQVSEPVPQEKCTQRNVYNLLRDAQTSPPVQRLDFGQLLSVSAWQDSEEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEEQTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQPANQCAKKRAELAVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGI 1211
            HMPILVIT I+CRVGPIVH  CQ AAPN+GVLPRVGEPDEHGMR VDIPALAP+GNYFLGAD+VS+PVPQEKCT+ NVYNLLRDA+ SP VQRLDFGQLLSVS+WQ+ EEG TAV FVLLARARLRNLRR+SHHSMDLFEVVAVLNVRLTKLVA I EGQDKE+PP  LVEEEQ   GSVL TLSA+SVFS+RVLAVATGSTT KAPE PAFS+HLCEP  GQNDLRPAALD LVL YARAKE+FIA GLQPAN+ A+KRAELAVRSGACFGSAVQRTKALQIQVA HQPGKSAD NGIVEEYGL FDIQ L+EDPTATVRRTHALGSNAGPYYGPD LHDCNHGDDCRQKYGGI
Sbjct:  105 HMPILVITHIICRVGPIVHGLCQTAAPNKGVLPRVGEPDEHGMRTVDIPALAPMGNYFLGADKVSKPVPQEKCTRSNVYNLLRDAKPSPAVQRLDFGQLLSVSSWQEVEEGDTAVAFVLLARARLRNLRRQSHHSMDLFEVVAVLNVRLTKLVAVIREGQDKELPPTALVEEEQVVVGSVLQTLSARSVFSSRVLAVATGSTTGKAPEFPAFSRHLCEPEVGQNDLRPAALDDLVLTYARAKEEFIASGLQPANERARKRAELAVRSGACFGSAVQRTKALQIQVAHHQPGKSADINGIVEEYGLSFDIQSLEEDPTATVRRTHALGSNAGPYYGPDTLHDCNHGDDCRQKYGGI 459

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BLAST of Ec-00_006460.2 vs. uniprot
Match: A0A6H5KWH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWH1_9PHAE)

HSP 1 Score: 463 bits (1191), Expect = 1.100e-155
Identity = 246/314 (78.34%), Postives = 262/314 (83.44%), Query Frame = 3

Query:  273 MRKVDIPALAPLGNYFLGADQVSEPVPQEKCTQRNVYNLLRDAQTSPPVQRLDFGQLLSVSAWQDSEEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEEQTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQPANQCAKKRA-ELAVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGI 1211
            MR V IPALAPLGNYFLGAD VS+PVPQE+CT+ NVYNLLRDA+ SP VQRLDFGQLLSVS+ Q+ EEG TAV FVLLARARLRNL R+SHHSMDLFEVVA LNVRLTKLV FI +GQDKE+PP  LVEEEQ   GSVL T SAQSVFSTRVLAVATGSTT KAPELPAFS+HLC+P  GQNDLR AALD LVL YAR     +        Q A+K A   AVRS +CFGSA+QRTKALQIQVA HQPGKSAD NGIVEEYGL F IQPL+EDPT TVRRTHALGSNAGPYYGPD LHDCNHGDDCRQKYGGI
Sbjct:    1 MRTVHIPALAPLGNYFLGADNVSKPVPQERCTRSNVYNLLRDAKPSPAVQRLDFGQLLSVSSLQELEEGDTAVAFVLLARARLRNLCRQSHHSMDLFEVVAALNVRLTKLVTFIRKGQDKELPPTALVEEEQVGVGSVLQTSSAQSVFSTRVLAVATGSTTGKAPELPAFSRHLCKPEVGQNDLRSAALDDLVLIYARVS---VHREWTSTRQRARKEAGRTAVRSRSCFGSALQRTKALQIQVAHHQPGKSADINGIVEEYGLSFGIQPLEEDPTTTVRRTHALGSNAGPYYGPDTLHDCNHGDDCRQKYGGI 311

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BLAST of Ec-00_006460.2 vs. uniprot
Match: A0A6H5K1E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1E3_9PHAE)

HSP 1 Score: 476 bits (1225), Expect = 1.020e-153
Identity = 255/355 (71.83%), Postives = 272/355 (76.62%), Query Frame = 3

Query:  147 HMPILVITDIMCRVGPIVHDRCQMAAPNEGVLPRVGEPDEHGMRKVDIPALAPLGNYFLGADQVSEPVPQEKCTQRNVYNLLRDAQTSPPVQRLDFGQLLSVSAWQDSEEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEEQTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQPANQCAKKRAELAVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGI 1211
            HMPILVITDIM RVGPIVH  CQ AAPN+GVLPRVGEPDEHGMR VDIPALAP+GNYF GAD++S+PVPQEKCT+ NVYNLLRDA+ SP VQRL+FGQLLS S+WQ+ EEG TAV FVLLARARLRNLRR+SHHSMDLFEVVAVLNVRLTKLVA I EGQDKE+PP  LVEEEQ   GSVL TLSAQSVFSTRVLA ATGSTT KAP  PAFS+HLCEP  GQNDLRPAALD LVL YARAKE+FIA G QPAN+  +KRA      GA                                          L+EDPTATVRRTHALGSNAGPYYGPD LHDCNHGDD RQKYGGI
Sbjct:  442 HMPILVITDIMGRVGPIVHGLCQTAAPNKGVLPRVGEPDEHGMRTVDIPALAPVGNYFFGADKISKPVPQEKCTRSNVYNLLRDAKPSPAVQRLNFGQLLSASSWQEVEEGDTAVAFVLLARARLRNLRRQSHHSMDLFEVVAVLNVRLTKLVAVIREGQDKELPPTALVEEEQVVVGSVLQTLSAQSVFSTRVLAAATGSTTGKAPRFPAFSRHLCEPEVGQNDLRPAALDDLVLTYARAKEEFIASGRQPANERVRKRA------GA------------------------------------------LEEDPTATVRRTHALGSNAGPYYGPDTLHDCNHGDDFRQKYGGI 748

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BLAST of Ec-00_006460.2 vs. uniprot
Match: A0A6H5KAC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC5_9PHAE)

HSP 1 Score: 417 bits (1073), Expect = 1.910e-139
Identity = 217/242 (89.67%), Postives = 225/242 (92.98%), Query Frame = 3

Query:  141 MQHMPILVITDIMCRVGPIVHDRCQMAAPNEGVLPRVGEPDEHGMRKVDIPALAPLGNYFLGADQVSEPVPQEKCTQRNVYNLLRDAQTSPPVQRLDFGQLLSVSAWQDSEEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEEQTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYAR 866
            MQHMPILVITDIMCRVGPIVH  CQ AAPN+GVLPRVGEPDEHGMRKVDIPALAPLGNYFLGADQVSEP  QEKCTQ NVYNLLRDAQ SPPVQRLDFGQLLSVSAWQD +EG TAV FVLLARARLRNLRR+SHHS+DLFEVVAV NVRLTKLVAFISEGQD++VPPAVLVEEEQ APGSVL TLSAQSVFSTRVLAVATGSTT KAPELPAFSQHLCEPVAGQND+RP ALD LVL YA+
Sbjct:    1 MQHMPILVITDIMCRVGPIVHGICQTAAPNKGVLPRVGEPDEHGMRKVDIPALAPLGNYFLGADQVSEPAQQEKCTQSNVYNLLRDAQPSPPVQRLDFGQLLSVSAWQD-KEGNTAVAFVLLARARLRNLRRQSHHSIDLFEVVAVPNVRLTKLVAFISEGQDEDVPPAVLVEEEQVAPGSVLLTLSAQSVFSTRVLAVATGSTTGKAPELPAFSQHLCEPVAGQNDVRPDALDDLVLTYAQ 241

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BLAST of Ec-00_006460.2 vs. uniprot
Match: A0A6H5KKU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU6_9PHAE)

HSP 1 Score: 368 bits (944), Expect = 9.730e-112
Identity = 212/358 (59.22%), Postives = 251/358 (70.11%), Query Frame = 3

Query:  147 HMPILVITDIMCRVGPIVHDRCQMAAPNEGVLPRVGEPDEHGMRKVDIPALAPL-GNYFLGADQVSEPV-PQEKCTQRNVYNLLRDAQTSPPVQRLDFGQLLSVSAWQDSEEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEE-QTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQPANQCAKKRAELAVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGI 1211
            HMPILVI+DIMCRVGPIVH RC  AAP+ GVLPR+GEPD+ GMR+VDIPALA L G+ F GA++ + PV  QE C Q+NVYNLLRDA  SP  Q+LDF QLL VSA  D+     A +F+LLAR   R L R SH+S+DLFE+VAVLN R T++ A I E  D   P A  VE+  +    SV  TLS QSVFSTRVLAVATGS T + P LP FS  + E + G  D+   AL++L   YA+AKE F+A GL PAN  AKKRA LAVRSGACFG+A  R KALQIQ+    P KS D  G V E+GL F++ P  E+P AT RR H LGS+AGPYY PD L+DCNHG +CRQ +G I
Sbjct:  443 HMPILVISDIMCRVGPIVHQRCPTAAPDNGVLPRIGEPDDKGMRRVDIPALASLPGSNFSGAEEDTPPVVEQESCPQKNVYNLLRDAAPSPRQQQLDFSQLLEVSAVNDAGS-FAAAEFMLLARGCWRQLHRHSHYSLDLFEIVAVLNARTTQVAACIGEVGDP-APVAAFVEDGGEVDMDSVRKTLSEQSVFSTRVLAVATGSITGEVPVLPPFSDPVFELLVGDKDVGRDALENLCFDYAQAKENFVADGLLPANDDAKKRAVLAVRSGACFGAANARAKALQIQLGLMNPEKSTD--GKVAEFGLSFNVTPPVEEPGATKRRRHPLGSDAGPYYAPDTLNDCNHGIECRQAFGWI 796

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BLAST of Ec-00_006460.2 vs. uniprot
Match: A0A6H5KMZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMZ3_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 1.490e-110
Identity = 177/208 (85.10%), Postives = 188/208 (90.38%), Query Frame = 3

Query:  147 HMPILVITDIMCRVGPIVHDRCQMAAPNEGVLPRVGEPDEHGMRKVDIPALAPLGNYFLGADQVSEPVPQEKCTQRNVYNLLRDAQTSPPVQRLDFGQLLSVSAWQDSEEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEEQTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPE 770
            HMPILVIT I+CRVGPIVH  CQ AAPN+GVLPRVGEPDEHGMR VDIPALAP+GNYFLGAD+VS+PVPQEKCT+ NVYNLLRDA+ SP VQRLDFGQLLSVS+WQ+ EEG TAV FVLLARARLRNLRR+SHHSMDLFEVVAVLNVRLTKLVA I EGQDKE+PP  LVEEEQ   GSVL TLSAQSVFSTRVLAVATGSTT KAPE
Sbjct:   46 HMPILVITHIICRVGPIVHGLCQTAAPNKGVLPRVGEPDEHGMRTVDIPALAPMGNYFLGADKVSKPVPQEKCTRSNVYNLLRDAKPSPAVQRLDFGQLLSVSSWQEVEEGDTAVAFVLLARARLRNLRRQSHHSMDLFEVVAVLNVRLTKLVAVIREGQDKELPPTALVEEEQVVMGSVLQTLSAQSVFSTRVLAVATGSTTGKAPE 253

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BLAST of Ec-00_006460.2 vs. uniprot
Match: A0A6H5KWV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV2_9PHAE)

HSP 1 Score: 321 bits (822), Expect = 3.630e-97
Identity = 178/244 (72.95%), Postives = 190/244 (77.87%), Query Frame = 3

Query:  471 EEGTTAVDFVLLARARLRNLRRRSHHSMDLFEVVAVLNVRLTKLVAFISEGQDKEVPPAVLVEEEQTAPGSVLPTLSAQSVFSTRVLAVATGSTTAKAPELPAFSQHLCEPVAGQNDLRPAALDHLVLAYARAKEKFIAIGLQPANQCAKKRAELAVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKY 1202
            EEG TAV FVLLARARLRNLRR+SHHSMDLFEV+AV+NVRLTKLVAFISEGQDKEVPP VLVE+EQ APGSVLPTL AQSVFSTRVLAVATGSTT KAPE                                A+E+F   GLQPAN+C +KRAELA RS ACFGSAV+RTKALQIQVAQHQPGK+ADTN IV+EY LPF  QPLQEDPTATVRRTHALGSN GPY G D  HD NHGDDCR+KY
Sbjct:  272 EEGYTAVAFVLLARARLRNLRRQSHHSMDLFEVMAVMNVRLTKLVAFISEGQDKEVPPTVLVEKEQVAPGSVLPTLLAQSVFSTRVLAVATGSTTGKAPE--------------------------------AEEEFTN-GLQPANECTRKRAELAERSRACFGSAVRRTKALQIQVAQHQPGKTADTNDIVDEYRLPFGTQPLQEDPTATVRRTHALGSNPGPYSGLDTPHDSNHGDDCRRKY 482

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BLAST of Ec-00_006460.2 vs. uniprot
Match: A0A6H5JTF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTF9_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 4.790e-62
Identity = 105/115 (91.30%), Postives = 109/115 (94.78%), Query Frame = 3

Query:  867 AKEKFIAIGLQPANQCAKKRAELAVRSGACFGSAVQRTKALQIQVAQHQPGKSADTNGIVEEYGLPFDIQPLQEDPTATVRRTHALGSNAGPYYGPDALHDCNHGDDCRQKYGGI 1211
            AKE+FIA GLQPAN+ A+KRAELAVRSGACFGSAVQRTKALQIQVA HQPGKSAD NGIVEEYGL FDIQPL+EDPTATVRRTHALGSNAGPYYGPD LHDCNHGDDCRQKYGGI
Sbjct:    5 AKEEFIASGLQPANERARKRAELAVRSGACFGSAVQRTKALQIQVAHHQPGKSADINGIVEEYGLSFDIQPLEEDPTATVRRTHALGSNAGPYYGPDTLHDCNHGDDCRQKYGGI 119

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BLAST of Ec-00_006460.2 vs. uniprot
Match: A0A6H5JU18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU18_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 1.160e-55
Identity = 113/180 (62.78%), Postives = 125/180 (69.44%), Query Frame = 2

Query: 1214 SCAQLSGVNLNAHEQNHAKKKKFLHMLNVMKFDRFAFMVTLINETENEAINRKSVANMVKRVRGHGSERVEICQAQVWFCGRCFCQKSLMRSFDQFGRVRLTF--VKP*PYF*GGS---DVVVQCLGCFVVRCPLELNRLRHYVISPGSQWWVEFIFFCSLSVDGVSRLVEGIYSSAFWG 1738
            SCAQLSGVNLNA+EQNHAKKKKFL  LNVMKFDRFAFMVTLINET+NEAINR+SVAN VKRVRGHGSERVEICQA+VWF GRCFCQ+SL+RSFDQF RVR TF  +    ++ G     DV   C   F    PL   R    V + G       +FF    + G   LV GI S AFWG
Sbjct:  133 SCAQLSGVNLNAYEQNHAKKKKFLRTLNVMKFDRFAFMVTLINETKNEAINRESVANTVKRVRGHGSERVEICQAEVWFWGRCFCQESLVRSFDQFSRVRPTFLFIHSHTFWRGRMLLYDVSDACGTVFASADPLAPFRHFALVAAVGRV----LLFFLVFGLMGCRWLVVGICSCAFWG 308

The following BLAST results are available for this feature:

BLAST of Ec-00_006460.2 vs. uniprot

BLAST of Ec-00_006460.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G349_ECTSI	3.730e-259	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JVZ9_9PHAE	8.210e-207	85.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWH1_9PHAE	1.100e-155	78.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K1E3_9PHAE	1.020e-153	71.83	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAC5_9PHAE	1.910e-139	89.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KKU6_9PHAE	9.730e-112	59.22	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KMZ3_9PHAE	1.490e-110	85.10	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWV2_9PHAE	3.630e-97	72.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTF9_9PHAE	4.790e-62	91.30	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU18_9PHAE	1.160e-55	62.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:10244347..10247402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	2128
Hectar predicted targeting category	other localisation
Gene id	Ec-00_006460.2

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_006460	Ec-00_006460	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 10244347..10247402 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_006460.2	Ec-00_006460.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 10245164..10246487 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_006460.2.1	Ec-00_006460.2.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 10244347..10245213 +
Ec-00_006460.2.2	Ec-00_006460.2.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 10245881..10245944 +
Ec-00_006460.2.3	Ec-00_006460.2.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 10246206..10247402 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_006460	5UTR:Ec-00_006460.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	five_prime_UTR	chr_00 10244347..10245163 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_006460.2	CDS:Ec-00_006460.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 10245164..10245213 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_006460	3UTR:Ec-00_006460.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	three_prime_UTR	chr_00 10246488..10247402 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:10244347..10247402+
coding sequence from alignment at chr_00:10244347..10247402+

mRNA sequence

>Ec-00_006460.2 ID=Ec-00_006460.2|Name=Ec-00_006460.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=132bp
MIFDLRRSITWFWPTPGPRRSSSRLDFNPPTSAQRRGQNWLCAQEHASGR
RCSVRKPFRFRWLNINRGKALTPMASWKSMAFRSTSNRCRRTPRRQCAER
TPWGAMPGLTTGLTPCTTATTGMTAAKSTVG*

spliced messenger RNA

>Ec-00_006460.2 ID=Ec-00_006460.2|Name=Ec-00_006460.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2128bp|location=Sequence derived from alignment at chr_00:10244347..10247402+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GTATCCGTCTCAGATTCGTTTGTGAACTGTCTGTTGAATACGTCAGGCGA
ATACACGACAGTAGAACCCAAGAAAACTTTGTCAACTTCCCACGCTCTAC
CTTCACCCATGCTTTCATGTCCCCCGTGTCCCCCATTGTTAATGCAGCAC
ATGCCTATCCTCGTCATCACGGACATCATGTGTCGTGTAGGTCCGATCGT
CCACGACCGCTGCCAGATGGCGGCACCGAACGAAGGAGTTCTTCCCCGGG
TTGGCGAGCCTGACGAGCATGGCATGCGGAAGGTGGACATCCCAGCACTA
GCGCCTCTGGGAAATTACTTTCTTGGCGCCGATCAGGTTTCGGAGCCCGT
ACCGCAGGAGAAATGCACTCAACGCAATGTGTACAATCTCCTGCGCGATG
CGCAAACTTCTCCTCCGGTTCAACGGTTGGACTTCGGTCAGCTTCTCAGC
GTTTCAGCATGGCAGGATAGCGAAGAAGGGACCACCGCCGTGGACTTCGT
GCTGCTTGCTCGGGCCCGTTTGCGGAACCTGCGCCGCCGAAGCCACCACT
CCATGGACCTCTTTGAGGTAGTGGCTGTTCTGAACGTGCGCCTCACCAAG
CTCGTGGCTTTCATCAGCGAAGGACAAGACAAGGAGGTCCCGCCAGCAGT
ACTTGTCGAGGAAGAGCAGACGGCCCCGGGCTCGGTGCTGCCGACGTTAT
CGGCGCAGAGCGTGTTCTCCACACGCGTTCTCGCGGTGGCGACTGGGTCC
ACCACCGCCAAGGCTCCGGAACTCCCTGCCTTCTCTCAGCATCTTTGCGA
ACCTGTGGCTGGCCAGAATGATCTTCGACCTGCGGCGCTCGATCACCTGG
TTTTGGCCTACGCCCGGGCCAAGGAGAAGTTCATCGCGATTGGACTTCAA
CCCGCCAACCAGTGCGCAAAGAAGAGGGCAGAACTGGCTGTGCGCTCAGG
AGCATGCTTCGGGTCGGCGGTGCAGCGTACGAAAGCCCTTCAGATTCAGG
TGGCTCAACATCAACCGGGGAAAAGCGCTGACACCAATGGCATCGTGGAA
GAGTATGGCCTTCCGTTCGACATCCAACCGCTGCAGGAGGACCCCACGGC
GACAGTGCGCAGAACGCACGCCTTGGGGAGCAATGCCGGGCCTTACTACG
GGCCTGACGCCCTGCACGACTGCAACCACGGGGATGACTGCCGCCAAAAG
TACGGTGGGATAGACTCATGCGCCCAGCTCTCGGGGGTCAACCTCAACGC
GCACGAGCAGAACCATGCGAAGAAGAAAAAGTTTCTGCACATGTTGAATG
TCATGAAATTTGACCGCTTTGCGTTCATGGTAACTCTGATCAACGAGACC
GAGAATGAGGCAATAAACCGCAAATCGGTGGCAAACATGGTCAAGCGTGT
TCGAGGCCATGGCTCGGAACGAGTAGAGATTTGCCAGGCTCAGGTTTGGT
TCTGCGGCAGATGCTTCTGCCAGAAGTCTCTAATGCGATCATTCGACCAG
TTCGGCCGGGTCCGGCTGACCTTTGTTAAGCCATAGCCATACTTTTGAGG
GGGCTCGGATGTTGTTGTACAATGTCTCGGATGCTTTGTGGTACGGTGTC
CGCTTGAGCTGAACCGCTTGCGCCATTACGTCATTTCGCCCGGTTCGCAG
TGGTGGGTAGAGTTCATTTTTTTTTGTAGTCTTTCGGTTGATGGTGTGTC
GAGGCTGGTGGAAGGAATATACAGCTCCGCGTTTTGGGGGATAGATACGT
TTGGTTTTTCTTGAGGGGAATTCATTGATTTCGCTACACGATAGGGTTGC
TTCAAGAACTATTTCCGAGCCCACCGACGTTCCGTTTGTCAGCCTTTCAC
AGCACTTCCAGTACTATCGACTGCTCGCTGTTTTTTGTGTTTCCAAGAGC
GCGATGTATCTTTTGCCTTCGAGCCTTGGCTTGAAAGATGCGTATCCAAG
GACAACCAGACCTGTTCCCAAATGTGAAAGTAACGAATTGTCGAAGAACC
GTTTTTGATCCTATATCGAAAACAAGGCAGACCTACCTACCATTGGGTTC
GGCTCATTGCGTTCCATCCCGATGAGGGTAGAAATTATTTTGTGTTATGT
TTAAGAAAGTTGTCTGGTGCCCACTTGC

protein sequence of Ec-00_006460.2

>Ec-00_006460.2 ID=Ec-00_006460.2|Name=Ec-00_006460.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=132bp
MIFDLRRSITWFWPTPGPRRSSSRLDFNPPTSAQRRGQNWLCAQEHASGR
RCSVRKPFRFRWLNINRGKALTPMASWKSMAFRSTSNRCRRTPRRQCAER
TPWGAMPGLTTGLTPCTTATTGMTAAKSTVG*

mRNA from alignment at chr_00:10244347..10247402+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_006460.2 ID=Ec-00_006460.2|Name=Ec-00_006460.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3056bp|location=Sequence derived from alignment at chr_00:10244347..10247402+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GTATCCGTCTCAGATTCGTTTGTGAACTGTCTGTTGAATACGTCAGGCGA
ATACACGACAGTAGAACCCAAGAAAACTTTGTCAACTTCCCACGCTCTAC
CTTCACCCATGCTTTCATGTCCCCCGTGTCCCCCATTGTTAATGCAGCAC
ATGCCTATCCTCGTCATCACGGACATCATGTGTCGTGTAGGTCCGATCGT
CCACGACCGCTGCCAGATGGCGGCACCGAACGAAGGAGTTCTTCCCCGGG
TTGGCGAGCCTGACGAGCATGGCATGCGGAAGGTGGACATCCCAGCACTA
GCGCCTCTGGGAAATTACTTTCTTGGCGCCGATCAGGTTTCGGAGCCCGT
ACCGCAGGAGAAATGCACTCAACGCAATGTGTACAATCTCCTGCGCGATG
CGCAAACTTCTCCTCCGGTTCAACGGTTGGACTTCGGTCAGCTTCTCAGC
GTTTCAGCATGGCAGGATAGCGAAGAAGGGACCACCGCCGTGGACTTCGT
GCTGCTTGCTCGGGCCCGTTTGCGGAACCTGCGCCGCCGAAGCCACCACT
CCATGGACCTCTTTGAGGTAGTGGCTGTTCTGAACGTGCGCCTCACCAAG
CTCGTGGCTTTCATCAGCGAAGGACAAGACAAGGAGGTCCCGCCAGCAGT
ACTTGTCGAGGAAGAGCAGACGGCCCCGGGCTCGGTGCTGCCGACGTTAT
CGGCGCAGAGCGTGTTCTCCACACGCGTTCTCGCGGTGGCGACTGGGTCC
ACCACCGCCAAGGCTCCGGAACTCCCTGCCTTCTCTCAGCATCTTTGCGA
ACCTGTGGCTGGCCAGAATGATCTTCGACCTGCGGCGCTCGATCACCTGG
TTTTGGCCTACGCCCGGGTGAGTACGCCTTCTTTGCGTAGCTGACGTAGT
GGGCTGTTGTGCTTTGTCTTTGGCGGTATTATCAATACTGGTGGTTGTTC
GTTGCTCCGTTGGTCAAGTGGGTTTTTTTTCGCGTTCCTCATTGAACATC
GTTGTCCCTCCTTTTTTTTCTTCCACCTTACGTTCCTTCCGTTTTCCTTC
TCGGCGTCGCCGGTTGATTTGATTTCTGCGCGCGGCAAAAGCTACCTTGT
TTCATGTTTTGTTATTCAATTCGGAGCAGTGAACATAGGTAGATCACTGC
TGACACATTGACATATTACTCATGTGTTGCTGCAATTTGAAAAACAATGC
TAGAGACGCTAGAGCGGGGAACAAGAACATCTTTTCTCGCATGCTGGTAA
GGACATGCGCATGCTCTGTGCCCACCGCTAAAACTACCACACCTCTCCCA
TTCAGCGCATGCACTTCGTTGCATATTAAAAGGCTGTAGTGCTCGAAGCT
CTTGAGTTGCTGACATGTCAACAAGACTACCCAGCAATGTTTTTTTTTTC
TGATGCTTGTACAGAGTTTCCTGTATAAATGCATTAAAGCAGCCCATTGC
GGTAACCCAACTATTTAGACAACTTTTTCGACCACACGGTTTACTTTCCG
TCCCCTTCTTCGGGACCTCTGACATCTGGATCAGGCCAAGGAGAAGTTCA
TCGCGATTGGACTTCAACCCGCCAACCAGTGCGCAAAGAAGAGGGCAGGT
ACGAGGACGTGGACACTTGCGTGTTAGGTGTTGAGGCTAGTTGTTTTGTT
GGTCCAATAATCTAAGGACTACCAATCTACCGGGCTGTGTACGTTTTTCC
ATAATGTGTCAATGTTGGTGCCGGTATCAGGCCGGTATGGTACATGTCGT
TCGTTACCTCCAGGCCGGCTCAAAATGATCAAACCTTAGTCAAAACGTTT
TCATGAGCCAACACATGGCATGCCGTTTTGTTGTACGTCATCTCTGTTCG
TCCTCACAGAACTGGCTGTGCGCTCAGGAGCATGCTTCGGGTCGGCGGTG
CAGCGTACGAAAGCCCTTCAGATTCAGGTGGCTCAACATCAACCGGGGAA
AAGCGCTGACACCAATGGCATCGTGGAAGAGTATGGCCTTCCGTTCGACA
TCCAACCGCTGCAGGAGGACCCCACGGCGACAGTGCGCAGAACGCACGCC
TTGGGGAGCAATGCCGGGCCTTACTACGGGCCTGACGCCCTGCACGACTG
CAACCACGGGGATGACTGCCGCCAAAAGTACGGTGGGATAGACTCATGCG
CCCAGCTCTCGGGGGTCAACCTCAACGCGCACGAGCAGAACCATGCGAAG
AAGAAAAAGTTTCTGCACATGTTGAATGTCATGAAATTTGACCGCTTTGC
GTTCATGGTAACTCTGATCAACGAGACCGAGAATGAGGCAATAAACCGCA
AATCGGTGGCAAACATGGTCAAGCGTGTTCGAGGCCATGGCTCGGAACGA
GTAGAGATTTGCCAGGCTCAGGTTTGGTTCTGCGGCAGATGCTTCTGCCA
GAAGTCTCTAATGCGATCATTCGACCAGTTCGGCCGGGTCCGGCTGACCT
TTGTTAAGCCATAGCCATACTTTTGAGGGGGCTCGGATGTTGTTGTACAA
TGTCTCGGATGCTTTGTGGTACGGTGTCCGCTTGAGCTGAACCGCTTGCG
CCATTACGTCATTTCGCCCGGTTCGCAGTGGTGGGTAGAGTTCATTTTTT
TTTGTAGTCTTTCGGTTGATGGTGTGTCGAGGCTGGTGGAAGGAATATAC
AGCTCCGCGTTTTGGGGGATAGATACGTTTGGTTTTTCTTGAGGGGAATT
CATTGATTTCGCTACACGATAGGGTTGCTTCAAGAACTATTTCCGAGCCC
ACCGACGTTCCGTTTGTCAGCCTTTCACAGCACTTCCAGTACTATCGACT
GCTCGCTGTTTTTTGTGTTTCCAAGAGCGCGATGTATCTTTTGCCTTCGA
GCCTTGGCTTGAAAGATGCGTATCCAAGGACAACCAGACCTGTTCCCAAA
TGTGAAAGTAACGAATTGTCGAAGAACCGTTTTTGATCCTATATCGAAAA
CAAGGCAGACCTACCTACCATTGGGTTCGGCTCATTGCGTTCCATCCCGA
TGAGGGTAGAAATTATTTTGTGTTATGTTTAAGAAAGTTGTCTGGTGCCC
ACTTGC

Coding sequence (CDS) from alignment at chr_00:10244347..10247402+

>Ec-00_006460.2 ID=Ec-00_006460.2|Name=Ec-00_006460.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=396bp|location=Sequence derived from alignment at chr_00:10244347..10247402+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATCTTCGACCTGCGGCGCTCGATCACCTGGTTTTGGCCTACGCCCGG
GCCAAGGAGAAGTTCATCGCGATTGGACTTCAACCCGCCAACCAGTGCGC
AAAGAAGAGGGCAGAACTGGCTGTGCGCTCAGGAGCATGCTTCGGGTCGG
CGGTGCAGCGTACGAAAGCCCTTCAGATTCAGGTGGCTCAACATCAACCG
GGGAAAAGCGCTGACACCAATGGCATCGTGGAAGAGTATGGCCTTCCGTT
CGACATCCAACCGCTGCAGGAGGACCCCACGGCGACAGTGCGCAGAACGC
ACGCCTTGGGGAGCAATGCCGGGCCTTACTACGGGCCTGACGCCCTGCAC
GACTGCAACCACGGGGATGACTGCCGCCAAAAGTACGGTGGGATAG

Synonyms

The feature 'Ec-00_006460.2' has the following synonyms


Synonym
Esi0498_0010
Esi_0498_0010