mRNA_Ecto-sp6_S_contig10.429.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.429.1
Unique NamemRNA_Ecto-sp6_S_contig10.429.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: D7G927_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G927_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 1.060e-137
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1 
Query:   19 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQVSWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 612
            MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQVSWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS
Sbjct:    1 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQVSWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 198
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BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: A0A836CN50_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN50_9STRA)

HSP 1 Score: 301 bits (771), Expect = 2.680e-101
Identity = 145/197 (73.60%), Postives = 173/197 (87.82%), Query Frame = 1 
Query:   19 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQVSWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 609
            MK+++I  +RY  DT E ++LSQ ++LSS+GFFQR GIKEMCTFFSKTIVKRT  GQRQ+VQHEDYNVHVY+R DGLA T+TAD+EYP RVAFVLL  +++Q++EQ+ WQ+E R EAI F PM + IVDYQDPAKADKITKIQRDLD+TT VLH+TI++VLERGV+LD+LVDRSD LSRQSKMFYKQA+KTNSCCVV
Sbjct:    1 MKILAITMLRYGADTPEAIVLSQASDLSSFGFFQRAGIKEMCTFFSKTIVKRTPAGQRQTVQHEDYNVHVYVRHDGLAATITADMEYPMRVAFVLLMNMMDQFSEQIQWQAETREEAIVFAPMQQAIVDYQDPAKADKITKIQRDLDDTTNVLHKTIESVLERGVKLDDLVDRSDSLSRQSKMFYKQAKKTNSCCVV 197
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: A0A7S2V281_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V281_9STRA)

HSP 1 Score: 285 bits (728), Expect = 1.030e-94
Identity = 137/200 (68.50%), Postives = 172/200 (86.00%), Query Frame = 1 
Query:   19 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHE--DYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQV-SWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 609
            MK++S+  +RY RDTAEPVMLSQ  +LSS GFFQR G+KE+ TFF++ +VKRT PG RQ+VQH   DYNVHVY+R DGLAG VT+D+EYPPRVAFV+LTQLL+Q+A  V  W++EIR EAI++PP+ + ++ YQDPA+ADK+TKIQRDLD+TTE+LH+TIDNVLERG +LD LV+RSDDLSRQSK+FY QARK NSCC++
Sbjct:    1 MKLISVAILRYMRDTAEPVMLSQAADLSSIGFFQRNGVKELLTFFARMLVKRTSPGMRQTVQHNEFDYNVHVYVRADGLAGAVTSDMEYPPRVAFVMLTQLLDQFALDVRGWETEIRSEAIQWPPLGEALIRYQDPAEADKVTKIQRDLDQTTEILHKTIDNVLERGEKLDSLVERSDDLSRQSKLFYSQARKANSCCLI 200
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BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: W7TQ86_9STRA (Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQ86_9STRA)

HSP 1 Score: 280 bits (715), Expect = 9.150e-93
Identity = 133/199 (66.83%), Postives = 168/199 (84.42%), Query Frame = 1 
Query:   19 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQVS-WQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 612
            MK+V+I   RY RDT EP++LS V EL S+G+FQR GI+EMC F SKT++KR QPGQRQ++QHE+YNVH ++R DGL GTV ADLEYPPRVAFVLL+ LLE++A  ++ W S  + E++ +PP+ + I +YQDPAKADKITKI+RDLDETT++LH+TID VLERGV+LDELV+RS+DLS QSK+FYKQARKTNSCC +S
Sbjct:    1 MKIVAIALHRYQRDTPEPIILSSVTELESFGYFQRNGIREMCRFMSKTLIKRCQPGQRQTIQHEEYNVHCHLRTDGLGGTVIADLEYPPRVAFVLLSTLLERFAVDITNWSSVTQQESVTYPPLQEAIREYQDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
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BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: A0A6T5MNT8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MNT8_HETAK)

HSP 1 Score: 274 bits (701), Expect = 1.360e-90
Identity = 134/201 (66.67%), Postives = 166/201 (82.59%), Query Frame = 1 
Query:   19 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHE--DYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQVS--WQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 609
            MK+VSI  +RY RD  EPVML+Q  +LSS GFFQR G++E+ TFFSK +VKRT+PG RQ+VQH   DYNVH Y+R DGL+GTVTAD+EYP RVAF+LLTQLL+QYA ++S  W+ E R+E I FPP D+ +V YQDPA ADK+TKIQRDLD+TTE+L+ TIDNVL RG +LD LV+RSD+LSRQSKMFY QA++ NSCC++
Sbjct:    1 MKIVSIAILRYGRDVEEPVMLTQACDLSSLGFFQRSGVRELLTFFSKLMVKRTEPGTRQTVQHNEFDYNVHTYVRADGLSGTVTADMEYPARVAFLLLTQLLDQYATELSGVWERETRNEVIAFPPADQALVQYQDPAAADKVTKIQRDLDQTTEILYNTIDNVLARGEKLDNLVERSDELSRQSKMFYSQAKRANSCCLI 201
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BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: A0A6U0IUG2_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IUG2_9STRA)

HSP 1 Score: 271 bits (693), Expect = 3.480e-89
Identity = 134/200 (67.00%), Postives = 163/200 (81.50%), Query Frame = 1 
Query:   19 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQV--SWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 612
            MKVVSI  +R   D AEP+ +S   ELSSYGFFQRQG+KEM TFFSKT  KRT PGQRQS++HE Y VH Y+R DGLAGTVT DLEYP RVAFVLLTQLL+++ + V  SW+S    E++ FP +++ +  YQDPA ADK+TKIQ+DLDETT++LH+TID+VLERGV+LD LV+RS+DLS QSKMFYKQA+KTNSCC +S
Sbjct:   16 MKVVSIAILRTGPDVAEPIPVSMACELSSYGFFQRQGVKEMLTFFSKTFTKRTDPGQRQSIEHESYVVHCYVRSDGLAGTVTTDLEYPARVAFVLLTQLLDEFQQTVGDSWRSVTTPESVTFPKIEEYLQKYQDPAAADKVTKIQQDLDETTQILHKTIDSVLERGVKLDSLVERSNDLSAQSKMFYKQAKKTNSCCTIS 215
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BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: A0A7S2I938_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I938_9STRA)

HSP 1 Score: 265 bits (678), Expect = 2.870e-86
Identity = 129/202 (63.86%), Postives = 162/202 (80.20%), Query Frame = 1 
Query:   13 SRMKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQV--SWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 612
            ++MK+V +  +R  +D  EP+ L+   +LSSYG+FQRQG+KEM TFFSKT  KRT PGQRQS+ HE Y VH Y+R DGLAG VT+D EYP RVAFVLLTQLLE++ + V  SW++    E++ FPP++  +  YQDPA ADK+TKIQ+DLDETT VLH+TID+VLERG +LD LV++SDDLSRQSKMFYKQA+KTNSCCV+S
Sbjct:   58 NKMKIVGLTILRTGKDVEEPIPLTTACDLSSYGYFQRQGVKEMLTFFSKTFTKRTAPGQRQSITHESYVVHCYVRSDGLAGVVTSDAEYPSRVAFVLLTQLLEEFLQTVGDSWKTVTAPESVAFPPIETYLQKYQDPAAADKVTKIQQDLDETTSVLHKTIDSVLERGEKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVIS 259
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BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: A0A7R9W5E6_9STRA (Hypothetical protein n=4 Tax=Eupodiscales TaxID=33838 RepID=A0A7R9W5E6_9STRA)

HSP 1 Score: 264 bits (675), Expect = 2.930e-86
Identity = 129/200 (64.50%), Postives = 160/200 (80.00%), Query Frame = 1 
Query:   19 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQV--SWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 612
            +KVV I  +R   D  +P+ L    ELSS+GFFQRQG+KEM TFFSKT  KRTQPGQRQS+ HE Y VH Y+R DGLAG VT DLEYP RVAFVLLTQ+L+++   V  SW++    E++ FPP++  +  YQDPA ADK+TKIQ+DLDETT++LH+TID+VLERG +LD+LV+RSDDLS+QSKMFYKQA+KTNSCCV+S
Sbjct:   29 VKVVGISILRTGSDLPDPIPLCMACELSSFGFFQRQGVKEMLTFFSKTFTKRTQPGQRQSITHEQYVVHCYVRSDGLAGAVTTDLEYPARVAFVLLTQILDEFTGAVGDSWKTVTTPESVSFPPIENYLQKYQDPATADKVTKIQKDLDETTQILHKTIDSVLERGSKLDDLVERSDDLSKQSKMFYKQAKKTNSCCVIS 228
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: A0A6T5VLC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5VLC8_9STRA)

HSP 1 Score: 262 bits (669), Expect = 9.310e-86
Identity = 128/199 (64.32%), Postives = 163/199 (81.91%), Query Frame = 1 
Query:   19 MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQV--SWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 609
            MKVV +  +R      EP+ L+  N+LSS+G+FQRQG+ EM TFFSKT  KRTQPGQRQSV HE Y VH Y+R DGLAGTVT+DLEYP RVAFV+LTQ+L+ + +Q   SW+ E R E++ FP M++ +  +Q+PA+ADK++KIQ+DLDETTE+LH+TID+VLERGV+LD LV+RSDDLSRQSKMFYKQA+KTNSCC++
Sbjct:    1 MKVVGLSILRTGPSLDEPLPLAVANDLSSFGYFQRQGVSEMLTFFSKTFSKRTQPGQRQSVTHESYIVHCYVRGDGLAGTVTSDLEYPARVAFVMLTQMLDDFVQQFGDSWKRETRPESMTFPKMEEYLEKFQNPAEADKLSKIQKDLDETTEILHQTIDSVLERGVKLDALVERSDDLSRQSKMFYKQAKKTNSCCII 199
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BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Match: A0A7S2LY35_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LY35_9STRA)

HSP 1 Score: 263 bits (671), Expect = 1.710e-85
Identity = 135/204 (66.18%), Postives = 164/204 (80.39%), Query Frame = 1 
Query:   10 ASRMKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIVKRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLLEQYAEQV--SWQS-EIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 612
            A +MKVVSI  +R    +AEP  ++   +LSSYGFFQRQG+KEM TFFSKT  KRT+PGQRQS+ HE Y VH Y+R DGLAG+VT D EYPPRVAFVLLTQLL+++      SW+S     E+  FPP+++ IV YQDPA ADK+TKIQ DL+ETT++LH+TID+VLERGV+LD LV++SDDLSRQSKMFYKQA+KTNSCCVVS
Sbjct:   37 AFKMKVVSITILR-TTPSAEPTPIAMACDLSSYGFFQRQGVKEMLTFFSKTFTKRTEPGQRQSISHESYVVHCYVRSDGLAGSVTTDAEYPPRVAFVLLTQLLDEFLSTNGDSWKSMPTLTESTVFPPLEEYIVKYQDPASADKVTKIQNDLEETTQILHKTIDSVLERGVKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVVS 239
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G927_ECTSI1.060e-137100.00Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A836CN50_9STRA2.680e-10173.60Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S2V281_9STRA1.030e-9468.50Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TQ86_9STRA9.150e-9366.83Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae Ta... [more]
A0A6T5MNT8_HETAK1.360e-9066.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U0IUG2_9STRA3.480e-8967.00Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2I938_9STRA2.870e-8663.86Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7R9W5E6_9STRA2.930e-8664.50Hypothetical protein n=4 Tax=Eupodiscales TaxID=33... [more]
A0A6T5VLC8_9STRA9.310e-8664.32Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S2LY35_9STRA1.710e-8566.18Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:133325..137623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score398.3
Seed ortholog evalue2.1e-108
Seed eggNOG ortholog2880.D7G927
Preferred nameYKT6
Model size717
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623,ko:K08516,ko:K18999
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04130,ko04138,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04130,map04138
KEGG ModuleM00001,M00003,M00165,M00167
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016409,GO:0016417,GO:0016482,GO:0016740,GO:0016746,GO:0016747,GO:0019706,GO:0019707,GO:0022406,GO:0030133,GO:0030425,GO:0030659,GO:0031090,GO:0031201,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0036477,GO:0042144,GO:0042147,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090174,GO:0097440,GO:0097441,GO:0097447,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0140096
Exons6
EggNOG free text desc.SNAP receptor activity
EggNOG OGsCOG5143@1,KOG0861@2759
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-15_002130.1
EC3.1.3.16,4.1.2.13
Cds size597
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03021,ko03036,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.429.1prot_Ecto-sp6_S_contig10.429.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 133427..137605 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348695.415006-UTR-Ecto-sp6_S_contig10:133324..1334261682348695.415006-UTR-Ecto-sp6_S_contig10:133324..133426Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 133325..133426 -
1682348695.4676735-UTR-Ecto-sp6_S_contig10:137605..1376231682348695.4676735-UTR-Ecto-sp6_S_contig10:137605..137623Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 137606..137623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348695.4244843-CDS-Ecto-sp6_S_contig10:133426..1335641682348695.4244843-CDS-Ecto-sp6_S_contig10:133426..133564Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 133427..133564 -
1682348695.4322093-CDS-Ecto-sp6_S_contig10:133977..1340431682348695.4322093-CDS-Ecto-sp6_S_contig10:133977..134043Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 133978..134043 -
1682348695.4394138-CDS-Ecto-sp6_S_contig10:134508..1346071682348695.4394138-CDS-Ecto-sp6_S_contig10:134508..134607Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 134509..134607 -
1682348695.4465516-CDS-Ecto-sp6_S_contig10:135146..1352471682348695.4465516-CDS-Ecto-sp6_S_contig10:135146..135247Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 135147..135247 -
1682348695.4534843-CDS-Ecto-sp6_S_contig10:136380..1364631682348695.4534843-CDS-Ecto-sp6_S_contig10:136380..136463Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 136381..136463 -
1682348695.4606252-CDS-Ecto-sp6_S_contig10:137495..1376051682348695.4606252-CDS-Ecto-sp6_S_contig10:137495..137605Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 137496..137605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.429.1

>prot_Ecto-sp6_S_contig10.429.1 ID=prot_Ecto-sp6_S_contig10.429.1|Name=mRNA_Ecto-sp6_S_contig10.429.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=199bp
MKVVSICTMRYNRDTAEPVMLSQVNELSSYGFFQRQGIKEMCTFFSKTIV
KRTQPGQRQSVQHEDYNVHVYMRQDGLAGTVTADLEYPPRVAFVLLTQLL
EQYAEQVSWQSEIRHEAIRFPPMDKMIVDYQDPAKADKITKIQRDLDETT
EVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS*
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mRNA from alignment at Ecto-sp6_S_contig10:133325..137623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.429.1 ID=mRNA_Ecto-sp6_S_contig10.429.1|Name=mRNA_Ecto-sp6_S_contig10.429.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4299bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:133325..137623- (Ectocarpus species6 EcLAC_371)
CCACCACCAGCTAGCAGGATGAAGGTGGTTTCTATCTGCACGATGCGGTA
CAACCGCGACACAGCGGAGCCTGTGATGTTGTCACAGGTCAACGAGCTGT
CATCCTACGGCTTCTTTCAGCGCCAGGGGTGAGAGATGTGTCTCCTTCTT
TCCAAATAGCCCCGACGGAATACCAGCAGCAGTGTACCATACTTGCTGTC
ACACGAAGCAAGATGCTTGTCTCGTGCCCCCGTGGGTGCTTGACTTCTCC
GAAGCGTACGGCGGCAGTAGCAGGACTTGGTCTAGAGTTGCAGAAGGCAG
CAGTCGTGATAAAGTTGAGCAGTCTCCGGGTCCCTGCATATTGAACAACT
AGCATAGCAGACAATCGGAGTATTGTAAAATTCTTCCCCCTCTGTGTAGC
CAAATTTGACGAGCAGTTGGCGTTGTAATAGCCTCTATGGTTAGACCAAG
TAAGCATGGGTCTCCAGCATCAAAGCCACCGCTCGTTGTGCCTCACCTGC
CCGACCTCTGCCTACCCCCAAAAGAAGCTGCGCCTCCTGATCGCACATGT
GTGGGGAAGCAACTTGTGTTGGTCCACCTGTTGTTGGTACAGCAGTGAAT
TGTTGCGGTCTTCGTTGTGTCCTCAAATCCCGCATCTCCTCGTCCCTGGA
AAGTATGTTAGACTAATCTTCACTGAGGGAAGAAACAACTGGTAGTTGAC
ACTGCTGTATGTCAAGTTGACAGTTGTAGACTTCAACTGCTGTGGGAATA
TCTCGAATGGGTAGTCTTTCAGTGTGTGTAATTATTTTTCGTCAAGACTT
CCAGATACAACGCATCCGTTGTCGCGATTTACCCAACACCAGGCACATCC
CAGACAACGACCAAAGAGTGGACAATGGTAATTATGAGGTTACGCCACGC
GTAGTCGTGTTACACCATCCCGCATGTAGACCCGGAACACTGAAGAACAA
GAGTTTTGCTCAAGGAGTCATGCGTTGGCAGGTAGACATGTTCTTGCATG
CGTTCAAATTTTTTTGTGCACTATTTACTGTACCCCGGATACCTTCTCGA
CACTTCTATAAAATCTCGCTGAGTGCAAGAACCAAACGCCGGTCGCCTGT
CGTGGTAAATACTAATTTGTGCCTCACGCACGTGCTTGCTATTGCTACGG
GGCGTCGCAGAATCAAGGAGATGTGCACTTTCTTCAGCAAGACCATCGTG
AAGCGCACGCAACCGGGGCAGCGGCAGAGCGTACAGCACGAAGGTGGGAT
GAACTGCCACCACGGCGCGCTTGTGACATCGAGTTGTAAAACTGCTGTTA
GGGCATGAGGGTTGTTTCTGCGGCATGTCTTGTGAGCTTGTGGGCTTTGG
TCCTAAAGTTCGCACCCTATGGGACATCCGCTGAACACTGGATAGGTGAA
GCGCCCTAAACCCATGTTAGAGAATCCACCTCAAGTGTTTAGCAGATTAT
ACCCCCCAAGTGTATCACACACGAAGCGGCGGGTTAGCTGTGTGTGGCGC
GCCTGTTGTGTGCCAACGCGCAAAGATCGAAGTCCCTTGCGGTACTTGAA
GAAAAGTCACGCCTGCCGAATGGGAAATGTTTGGGTGGTCGCGATGCCCA
ATCGACCCTTGGCATATCCGGTTTGGCACAACCAACGCAACGATGGTGGC
CAGCTTCTGGTTCATCTTCGTGAAACGTAGCCTGAGCCGGCGAAAACCCG
GCACATGACTCCGTCCCGGCATTGCAGGGATGCGAGGTCAATGGTCTACC
GACTTCGACGTACGTTTACATGAAGTGCACCCCCTCCCCCGGGTGCTTCG
CACATGTCGCCGTCACGCAATAGCCGAAGAATCCGGTAGACAGGATATGT
AGATGTAGGGTGGCAAATTGCGCCAAGCGAACCCGTTCTATTGCCAGGGA
CTGACGCACTCCAGGTATCGCAGCGACAAACAGGCAACGAATGACCCCCC
CTCACTCCGCGCAAAGGGGATAATCGCACGTTGTGTTGAATTGGTCAAGC
GCCCTCGAGGCAGTTACACGGCGCTTCCAACTGTCTCTAGAAGTGAAAGC
ACCAGAAAATAAACTAAGTCATACGCAGCTGTCATCCGTACGCAAGGAAG
TAAGCACAAGATGCCGAACACCCTTAACAGGATGCAGCGCACCCTTCATG
CGACTCGCCGAATACCTCACGGCGGTTCGCGCTTGGTGATGGGAGAGCCT
GGTCCGGTGAGAACCCGGCGTGCTCCGTCCCGGCTTCGTATGGGATGCGA
GGTCAATGGTCTAACGACTACGGCATGCACGACTATGAGTACACCCCCCC
CCCCGGTTCCCCTCCCACGATGATGTGACATCGGCATAACACTACCGTCG
GCGATCTACTGCCACTGCTCGCGTAGACTACAACGTGCACGTGTACATGC
GGCAAGACGGATTGGCGGGGACGGTAACGGCGGATCTCGAGTACCCACCA
CGAGTCGCGTTCGTGCTGCTCACGCAGGTGAGCGGAGTTGGGGATCGGTG
TGTATGTGTGTGTGTGTTTTCTTCATTAGCATCGGCCGCTCTAACCGACT
GACCAATGAAGAGACGTCAGTCTTGTAGCGGGATAACACACAAGGACGGT
TCCTATTCAGAGAGTCGGGTTCTACCGACAGTTGTGTGTGTGTATGTTTT
ATTTTTGCTGTGTACCGCCGTGTGTAGGTGATGCCTTCCCAGGCCAGCAA
ACATTGTTAGCGATCAAAAGGCTTGACTGGGGGCACGAGTTCGAGTTTTG
GGACGACTGAACAAGATACAATGCGTGAGTGAGTTGTCTGCTTGTGTGAG
TATGACGATTGATTACGCCCGGTTTTATTCGACAGCTCCACCCGAAGGTC
TTGCCTTGGTAGTCGCAGCGGTGGCAGCAAGAGCCCAACGCCTAGGTTCC
TCTGTGGCCCGCATCGGTTCTCCGGACACGTAATCTAATGAGTCGCGCCC
CGTTCTCCCTCTCGCCGTGGGTGCTCTTGACACCCTCGCTATGTTTCTGT
TATATTTTCCCCTCAGCTGTTGGAGCAGTACGCGGAGCAGGTCTCGTGGC
AGTCCGAGATCAGACACGAGGCCATTCGATTCCCTCCGATGGACAAAATG
ATTGTGGACTACCAGGTAGGAAGAGCAGTGTGACTGACACCACAGCGGCG
AACGGCAATTGGCCGTGTATCTGGGCTTCTGTACCTAGTTCTTTGGCTAC
GCCCGTACCCTTGCGGGCGCACGGGGGAAAAATGCCGTACTACCAGCGGA
CCGTGGCCTGTTCTTGCGCGGCCGTTCAGTACAGTAGCCCCGCACGTTCT
CGTCCCTGGTGACGATTTACAGCAGTACTGTAGGAGTGATTTCACGATCG
TGCTTATTTCCGACGCGGTTTCTTCGGCGCTACTATACTGCATATGGGAA
TGGTGTGTCGGGGTGGCTGTCGTTGAGATATATTTGTTCAGTGGCCCTTG
ACATGGTTAATGTTCCGTTTCCACTCGTGAGCTGTCAAAAGAACCGCGCT
GATTGGGGGGGGGGGCGATTTGTTCTGAGACGATGGGATTCTGTCCGTCC
GCTGATGTTTTTGTTCAAACATGCTAACAGGACCCAGCGAAGGCGGACAA
GATCACCAAGATTCAGCGCGATTTGGACGAGACGACCGAAGTGCTGGTGA
GACGACGAGCTTGCCGTCATGGCCACTGTGTCTGTACTTACCCCCACAGT
ATCGTTCGTCGTGTCTAGGGTCAACATCTACGTGTTGGCGGCGCAATACC
GTTTTGTGTCACACAACACCTGTTTCGATTGGAAGCGCTTGTTGCGTTGT
GGTCTTAACTCCCGGTTCGAGCCACAGAGGGATATATGAGATAATTCGCA
CGGATTTTGGTCTCCACTGAACAAAGAGCGTGGCCGGGCCGCACGGGTTA
CCTGGTTGACACGGAACGTGCCAGTAGCTTTGTTCACGCCTGGTGGAAAG
TGAAAATGGAATTGAAAGTGGATAGACCCACAACGAAGACGCCCCCCGTA
ACCAACGTTCACGCTCGCGTTCGTGGTCGACGTAATAATAATGCCGTTGT
GAACGGCAGCACCGAACCATCGACAATGTGTTGGAGAGAGGGGTAAGGCT
GGATGAGCTCGTGGACCGATCCGACGACTTGAGCCGACAATCCAAGATGT
TCTACAAGCAAGCGAGGAAAACGAACAGCTGCTGCGTGGTGAGCTGATTG
GGAAGGGTGTTGAGCGGGTGGCGGGAAAGGGGCTTCTCCGTGCAAAGCCT
TGGACAAGTCGTCGCAACGAGAGAGAAAGGGTGGCCAAGATCGTTTGTC
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:133325..137623-

>mRNA_Ecto-sp6_S_contig10.429.1 ID=mRNA_Ecto-sp6_S_contig10.429.1|Name=mRNA_Ecto-sp6_S_contig10.429.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:133325..137623- (Ectocarpus species6 EcLAC_371)
ATGAAGGTGGTTTCTATCTGCACGATGCGGTACAACCGCGACACAGCGGA
GCCTGTGATGTTGTCACAGGTCAACGAGCTGTCATCCTACGGCTTCTTTC
AGCGCCAGGGAATCAAGGAGATGTGCACTTTCTTCAGCAAGACCATCGTG
AAGCGCACGCAACCGGGGCAGCGGCAGAGCGTACAGCACGAAGACTACAA
CGTGCACGTGTACATGCGGCAAGACGGATTGGCGGGGACGGTAACGGCGG
ATCTCGAGTACCCACCACGAGTCGCGTTCGTGCTGCTCACGCAGCTGTTG
GAGCAGTACGCGGAGCAGGTCTCGTGGCAGTCCGAGATCAGACACGAGGC
CATTCGATTCCCTCCGATGGACAAAATGATTGTGGACTACCAGGACCCAG
CGAAGGCGGACAAGATCACCAAGATTCAGCGCGATTTGGACGAGACGACC
GAAGTGCTGCACCGAACCATCGACAATGTGTTGGAGAGAGGGGTAAGGCT
GGATGAGCTCGTGGACCGATCCGACGACTTGAGCCGACAATCCAAGATGT
TCTACAAGCAAGCGAGGAAAACGAACAGCTGCTGCGTGGTGAGCTGA
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