mRNA_Ecto-sp6_S_contig10.515.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.515.1
Unique NamemRNA_Ecto-sp6_S_contig10.515.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.515.1 vs. uniprot
Match: D8LSQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSQ6_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.660e-38
Identity = 143/212 (67.45%), Postives = 147/212 (69.34%), Query Frame = 1 
Query:  244 ILGLAAVALALAATDATSDSYVADTTGGVTDAGPPSATSYYGSASDDGCGDGTIPVVEDGTPSPTFSVRCITIDDDLTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTSGEEATADTPVPTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGXXXXGAEGDADGAPGLGHARSPAAAV 879
            +LGLAAVALALAATDATSDSYVADTTGGVTDAGPPSAT YYG+ASDDGCGDGTIPVV++ TPSPT SVRCITI                     XXXXXXX                PTSGEEATADTPV   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 EDG    GAEGDADGAPGLGHARS AAAV
Sbjct:    1 MLGLAAVALALAATDATSDSYVADTTGGVTDAGPPSATYYYGAASDDGCGDGTIPVVDNETPSPTVSVRCITI---------------------XXXXXXXRRRRPDRRGYDDALPTPTSGEEATADTPV--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDDEGADAVPATPAPTSEDGDTEAGAEGDADGAPGLGHARSSAAAV 189
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.515.1 vs. uniprot
Match: A0A6H5JBN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN4_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.250e-37
Identity = 155/252 (61.51%), Postives = 163/252 (64.68%), Query Frame = 1 
Query:  208 MMTPTSATTTRIILGLAAVALALAATDATSDSYVADTTGGVTDAGPPSATSYYGSASDDGCGDGTIPVVEDGTPSPTFSVRCITIDDDLTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPTSGEEATADTP------------VPTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGXXXXGAEGDADGAPGLGHARSPAAAVLAAAXXALLAAAVLAA 927
            MM P SATTTR +LGLAAVALAL AT+AT+DSYV DTTGGV+DAGPPSAT YYGS SDDGCGDGTIPVV++ TP+PT SVRCITIDDD T                                      APT    A A TP                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX             EDG     AEG+ADGAPGLGHARSPAAAVLAAA XALLAAAVLAA
Sbjct:    1 MMVPASATTTRRMLGLAAVALALVATNATTDSYVVDTTGGVSDAGPPSAT-YYGSVSDDGCGDGTIPVVDNDTPAPTVSVRCITIDDDYT-------------------PSPTAADTEAGGGVAGDAAAPT----AAAMTPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADAVPATPAPTNEDGETAAEAEGEADGAPGLGHARSPAAAVLAAASXALLAAAVLAA 228
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSQ6_ECTSI1.660e-3867.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBN4_9PHAE1.250e-3761.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:995422..999955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size930
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002980.1
Cds size723
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.5177908-UTR-Ecto-sp6_S_contig10:995421..9955301682348693.5177908-UTR-Ecto-sp6_S_contig10:995421..995530Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 995422..995530 +
1682348693.5257266-UTR-Ecto-sp6_S_contig10:999134..9992321682348693.5257266-UTR-Ecto-sp6_S_contig10:999134..999232Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 999135..999232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348693.5331528-CDS-Ecto-sp6_S_contig10:999232..9999551682348693.5331528-CDS-Ecto-sp6_S_contig10:999232..999955Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 999233..999955 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.515.1prot_Ecto-sp6_S_contig10.515.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 999233..999955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.515.1

>prot_Ecto-sp6_S_contig10.515.1 ID=prot_Ecto-sp6_S_contig10.515.1|Name=mRNA_Ecto-sp6_S_contig10.515.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=241bp
MMTPTSATTTRIILGLAAVALALAATDATSDSYVADTTGGVTDAGPPSAT
SYYGSASDDGCGDGTIPVVEDGTPSPTFSVRCITIDDDLTDDDFTPPPTA
ADTEAGGGGGGVAEDGAAPTAAATTTPPAPTSGEEATADTPVPTVTPSSA
GTGTGTSADREVTATDGDETPAPSPASSTDDEGADAVPATPTPTGEDGDT
ETGAEGDADGAPGLGHARSPAAAVLAAASAALLAAAVLAA*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:995422..999955+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.515.1 ID=mRNA_Ecto-sp6_S_contig10.515.1|Name=mRNA_Ecto-sp6_S_contig10.515.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=4534bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:995422..999955+ (Ectocarpus species6 EcLAC_371)
ACAGCAGCAGCGCACACACCTCCCAGCCAGCACAGGAAGTGAGAGTAGCC
TCCGACTTGTCAATTGAGGGTACTTGTTCCAGGGGATATCGAGTACGAGA
ACGAGAGAGGTGAGAAGTTTTGCGGTGCTGTTGTTGTGGCTGCTCCTGGT
GGCTTGAAATGCTAAATGTAGATACAGCAGCAGCCGTTCCCATTTTTGGT
CCGTTCCTGTAGATGAACGGTGCTTTTCCGTTGTTCTGAACACAACGGTG
GGGGTGTTGTTCGTTGTTCTACATAAGACAGAAAACACCACGTAGCGGAG
CCAGCTGTGACTAGCAGTGCACAAAGGACGCATTGGGGGACGTCGGTGGT
AACACGGTACCCCGTGATCCCTCGGTGTGTGTATGCATGGGTAAAGCGCA
CCGTCCTGGCCCCTGTTTCGTCTGGGAGATGGCGCGGAAAGGCTGGAACA
GGGAGAGAGCGGGTAGGAAGTGGCAAGTCAAACGACCACACGGTGACCTC
GCTTGGCTATACAGCACGCTCCCACGCACCACTCGTATGGCAACTCCGGT
GCTCCCGCCGAGTGGCGATTCGTATGTCTCCGTTTCTTGCCCGCAATTAC
GGCTGTTGCTGCTGTACCAACAGCTGCAGCCTCTCAAGCCCGCGGCTGTG
TGGTAACATGCTTGTGTAGACGGTTGGCTTCGCTTGGTACAACACTGGAT
ACGGATAGCACGCGCTCCACTTGCGAGGTATCGCACGACGGGCACGGCCG
AGGTGCACGTTTGCAGCGCTGTCGCCTCTACGTCCGTCTGCGCTCGAAAT
CGCTTCGGTTCTACGCATAGACAGCTTCAACATCGCACCCAGCCCCGTGC
CGAAGACCCCACTACACACAGCACTTGTTGGAATGTTTCCCCGCCCCCCC
CAGCTCTGTCTCGTTCTGTAAGATGTACTTGGTCTAGTTATTTTCCAGTA
GGTACTCCTTTACATACCATCGATGTAAATTCGAATATTTGTTGATCTTG
CTCGCCGCGTGCTGTCGTTCTTTGGACACTTCTTCCTCTGGGAGAGAATT
GGTGGGGAGGGTACGCATAGCCTTTGGTTGCAGTTTGTAGGTCGACTCGT
TCCGTGATCTGACCCACAGCACGTGTAATGTACATTTAGTACACGTCTAC
CAACGGAGGTGACTAGGGCGATCGCCACTGCAGTTCGACGGGAAACAAAG
AACGGAAACGAACGGCCATCCTCTCAAGCTCTACAGCATACCCAGAGGAC
GTACCCGGTACATTCGACTACACATCGACACCGCAGCAAGTAAACCACAG
CAGTATTTGCTCACTCACAGCAAGTCGCACGCCTCTGTTCGACCTCTGCG
GTGCTCAGGGTGCTCATTTTCCGAACGCTTGGTTCTTCACAGCAGAGATT
GATGCGTACAGCAGTAGAGTAAGCAGTCTTGCCGTCCATACGACGCTGCT
TACAACTGCTGTTCGACTTGACTTTGGATGTTGTATATATGCTAGGAGGA
TTTTTAGGAACTCGAGGGAAAACTGCTGGCGACCTATGATACAACACGAC
ACAGCAGTCAAACCCTGCAACTCGGGCTGCAAGTGTATGTATGCATTCTT
CAATTCCGCTTGACCTGACGACGCCTGTCGTGGGCGTATGATATACCCTG
ACGCGGCCACTTAAACTGCTGTACACTGCCCTGATAGAAAACGGGGGACG
ACACCCTTCTATCAGTAGTTTTCTCTTCCTGCTTCTCCAGGAATCGCTTC
GATGCCACCAAAGAACCACAAAAACGTTCCCCTCCTCGGAACGGCCCAGA
TCCTACACACGCTTCATGGTTGAATTGTTTGAGTGCAAGCAGCTTGGTTG
ACTTTATATTCGCCGACCAAAACCAGAACATGGACAACGTTCCAGAGGCG
GAGCAAATAAACAGATGGGTGGATGTGTGGTGGCCGAGAGAGAGAGAGGG
AGTCGCTAACGATGCCAAACGAAGCATAGAAGGGAGGGTGAATATAATAG
GAACACGGTCGGCACTGCTGTTACGTCAAAGAAGAGCACAAGGTTCGAAT
CCCGGCGTAAGCGAGCTTTTCTTTCAAAGTGAGTTTTTCTCTCGCTTCCG
CTCCTGGCCTAGTGGATAGCGCTAGTTCGTGTGTACACGGAGGGAAGGAA
GAGAGTGCTGAACTCTTCTCGCATTAAAAACCGCAGGCAAAGTACCGCAG
AAGGGGAGGGTAAAGAAGGGCTCTTCTGTGTGACCACGGGTTGGAGTAAA
CGGCACTGGTGCTGTGAGCGCTGATTTTAAGTGAAAAAAAAAAAAAAAAA
AATGGCACCGGCGCTGTTCAGAATTTTGTGGCACTATTCAGGGCCTGAAA
ATCCCTCTTTGCCGGCTTGGCACCATTCAGGACTGTTCGAATTCAGAGTG
CAGCGCTTGCGCTTTGCGGGGCTGACAAGAGTACCAACCGAACGGTTTTT
TGGATCAATCGTGAGGTGGGCGACGTGGGCGGGCTTCACTAAGTTTCGTG
AGGCTCTTGGACTGTCGAAAACACGGCATTGGTCACATTAAAATTAACTT
GATTGACCAGATAGGTTTGTTGCACAGCGGTTGTTCTCTTCCCACCTCAG
CGCAAGCACTCGCTAGTCAAACGTTGCTGCTGCCTTTCGACCGTAGACCG
TGCTGCCCGATAAAAAATCACCTCGCTATCAAATTATCATGTGTTGTATT
GCAAGAAGGCCGTAGCACTATTCAGGCAACCTCAAAGGCACCCCTCGATC
GCGAAAGAAAGACGCTCAAGCACGCACCCGATGTACATTTGGAGGTAAAA
CATTTGGATGAAGTGCTCCTTATATGAGCATAGAAAAGAAAATGCAACCT
GAAAAAGGGGTGAAGAAGATAACGAACTCCCTTGTTCCTTCGATAAAAAG
CTAGAGAGAAGACCAAGCCTTCAGAAGCAAGAAAAACGACTGGCCAACCA
AAAGACGTCAGGCTCAGTGCGATCAAAAACCGAAAATATTTGTTTCTCGA
GGCCGTGAGAGGGTGTCATGGACGAGGCTGAGGTATTCTCTGGATAAAAG
ACACCAATGGTAGCAACAGAGAGAGGAGAAATACGCGACTGCCAAGGCTT
ACTACTACGTTGAACGCGCGTTCGTCTCGGAGTGTTTTCATGCTTCCTTA
GAAATGTTTTATTTACCAGCACTACTACACTTTCCACTGATATTTTCCCA
CCATTTTTCGGGCTTTCATCGGTACACCCAACCAACAGCTATGTACATAC
GGGTGTGGGCTGTTCCCCCGTGAAGGCACGAAGATAATCAATTCCTCGAA
ACCCGCGTAGCCCCCCCGCCCGCGCCGCCCATACGACGGCGGTAATAGCG
CGGTTGTGTCCAATGGGTCGGGCGACACGCTGGTGCACTTTTCCGGTCCA
ATCGCGCGCGTGCGTGCTGCCTGTTGGATACAAGCCGACCACAGCAGTTC
AGATCAAATCGTGTCGTGCAACATACGAGTTCGTTGGCAAAGATTGATTG
CACACGGACGCGGCAAGATTCTTTTGTACCTCCGAGATGAAGCAGTCGGT
TTTATGTACATGAGCCGATTGGTTGGCAAACATTGGCAACGTTTTTTTTC
ATTTCTGCTCCCCGGCTTTTTGAGGCCTCGGTTGTTCCCCCGACTTTACC
CCCATCACCCCCCGACCCCCCACCCCACCCCGCACTTCTCTCCATGCTCT
TTTTCCTGTGCAGGCGCGTGTTCTACGTTCTACGCCATTTTCCCAACAGG
CTCGCCCGGCAGATCATTTCAAACTACAACCCACGACACATCATATAACC
CAGCTGCAGCAATGATGACCCCGACTTCAGCAACAACAACCAGGATAATA
CTCGGTCTCGCGGCCGTCGCCCTGGCCTTGGCCGCCACAGACGCTACGTC
AGACTCCTATGTGGCCGACACCACCGGCGGAGTCACGGACGCGGGGCCCC
CCAGCGCGACCTCCTACTACGGCTCGGCGTCCGACGACGGGTGCGGGGAC
GGCACCATCCCCGTCGTCGAAGATGGCACCCCGTCCCCGACCTTCAGCGT
CCGCTGCATCACCATCGACGACGACTTGACAGACGACGACTTTACCCCGC
CGCCCACGGCCGCAGACACCGAGGCCGGCGGCGGCGGCGGCGGCGTCGCC
GAAGACGGCGCCGCCCCGACCGCCGCGGCTACGACGACGCCGCCGGCGCC
GACGTCCGGGGAGGAGGCGACCGCCGACACTCCCGTGCCGACAGTGACTC
CCTCCTCCGCGGGGACCGGCACCGGCACCAGTGCGGACCGGGAGGTGACG
GCGACTGACGGCGACGAGACCCCGGCGCCGTCCCCCGCGTCGTCTACGGA
CGACGAAGGAGCGGACGCCGTCCCGGCGACGCCGACGCCGACCGGCGAGG
ACGGCGACACGGAGACGGGGGCCGAGGGGGACGCGGACGGGGCCCCCGGG
CTAGGGCACGCTCGCTCCCCCGCGGCGGCGGTGCTGGCCGCCGCGTCTGC
GGCGCTCCTCGCGGCCGCCGTGCTCGCCGCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:995422..999955+

>mRNA_Ecto-sp6_S_contig10.515.1 ID=mRNA_Ecto-sp6_S_contig10.515.1|Name=mRNA_Ecto-sp6_S_contig10.515.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:995422..999955+ (Ectocarpus species6 EcLAC_371)
ATGATGACCCCGACTTCAGCAACAACAACCAGGATAATACTCGGTCTCGC
GGCCGTCGCCCTGGCCTTGGCCGCCACAGACGCTACGTCAGACTCCTATG
TGGCCGACACCACCGGCGGAGTCACGGACGCGGGGCCCCCCAGCGCGACC
TCCTACTACGGCTCGGCGTCCGACGACGGGTGCGGGGACGGCACCATCCC
CGTCGTCGAAGATGGCACCCCGTCCCCGACCTTCAGCGTCCGCTGCATCA
CCATCGACGACGACTTGACAGACGACGACTTTACCCCGCCGCCCACGGCC
GCAGACACCGAGGCCGGCGGCGGCGGCGGCGGCGTCGCCGAAGACGGCGC
CGCCCCGACCGCCGCGGCTACGACGACGCCGCCGGCGCCGACGTCCGGGG
AGGAGGCGACCGCCGACACTCCCGTGCCGACAGTGACTCCCTCCTCCGCG
GGGACCGGCACCGGCACCAGTGCGGACCGGGAGGTGACGGCGACTGACGG
CGACGAGACCCCGGCGCCGTCCCCCGCGTCGTCTACGGACGACGAAGGAG
CGGACGCCGTCCCGGCGACGCCGACGCCGACCGGCGAGGACGGCGACACG
GAGACGGGGGCCGAGGGGGACGCGGACGGGGCCCCCGGGCTAGGGCACGC
TCGCTCCCCCGCGGCGGCGGTGCTGGCCGCCGCGTCTGCGGCGCTCCTCG
CGGCCGCCGTGCTCGCCGCGTGA
back to top