mRNA_Ecto-sp6_S_contig10.493.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig10.493.1
Unique NamemRNA_Ecto-sp6_S_contig10.493.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
[Close]
BLAST of mRNA_Ecto-sp6_S_contig10.493.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.570e-19
Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = 2 
Query:    5 WEGWAECS*PNPCHLYLASSSKARVGDLLLPA--PDVRSGGCDCLLESNGVRALVVEKLGFVIDTGKDPFEGLPEELDDPPDE 247
            W GW +C      HLY+ASS +ARVGD LLPA  PD R   CDCLLE  GV  L VE+LG VIDTGKDPFEGL +E  + P+E
Sbjct:  622 WTGWLDCEKHPSQHLYMASSVEARVGDPLLPAAAPDARR--CDCLLEPGGVLRLAVEELGPVIDTGKDPFEGLSDEDTEDPEE 702
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig10.493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE2.570e-1960.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig10contigEcto-sp6_S_contig10:757299..757966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size257
Hectar predicted targeting categoryother localisation
Exons3
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348692.6028864-UTR-Ecto-sp6_S_contig10:757298..7573091682348692.6028864-UTR-Ecto-sp6_S_contig10:757298..757309Ectocarpus species6 EcLAC_371UTREcto-sp6_S_contig10 757299..757309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348692.6119385-CDS-Ecto-sp6_S_contig10:757309..7573551682348692.6119385-CDS-Ecto-sp6_S_contig10:757309..757355Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 757310..757355 -
1682348692.6203344-CDS-Ecto-sp6_S_contig10:757653..7577831682348692.6203344-CDS-Ecto-sp6_S_contig10:757653..757783Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 757654..757783 -
1682348692.6291625-CDS-Ecto-sp6_S_contig10:757896..7579661682348692.6291625-CDS-Ecto-sp6_S_contig10:757896..757966Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig10 757897..757966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig10.493.1prot_Ecto-sp6_S_contig10.493.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig10 757310..757966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig10.493.1

>prot_Ecto-sp6_S_contig10.493.1 ID=prot_Ecto-sp6_S_contig10.493.1|Name=mRNA_Ecto-sp6_S_contig10.493.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=82bp
MVGGLGRVFVAQPVPPLPGILIQGKGRRLASSRSRCAKWRLRLPAGIEWG
TGARCRETWLRDRHRKRPVRRPAGGIGRPPR*
back to top

mRNA from alignment at Ecto-sp6_S_contig10:757299..757966-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig10.493.1 ID=mRNA_Ecto-sp6_S_contig10.493.1|Name=mRNA_Ecto-sp6_S_contig10.493.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=668bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:757299..757966- (Ectocarpus species6 EcLAC_371)
ATGGTGGGAGGGTTGGGCAGAGTGTTCGTAGCCCAACCCGTGCCACCTCT
ACCTGGCATCCTCATCCAAGGTGTGGTATATTGCGGGGGGTAGGCTGAGT
TCGGGTTATCGACGTTTCGTGGTTTCACTGCCGCTTCATATGGTTGATGC
AAAATGTCCTTCTGTCGTAACGTCTGTCCACAGGCAAGGGTCGGCGACTT
GCTTCTTCCCGCTCCAGATGTGCGAAGTGGCGGTTGCGACTGCCTGCTGG
AATCGAATGGGGTACGGGCGCTCGTTGTCGAGAAACTTGGCTTCGTGATC
GACACCGGAAAAGGTGTGGATACGGGTTTGATTCGCATTTTGTTTTTGTA
TCCGAGCTCGGGGCATTTCTATGTCGTTTGCAACGACGAGACATATCAAA
ATACCAGTCTCTGACGCGATGCGTTTCTGCCGTGACTTTGTAGGCTACGT
GCAAAACAAGCCCGTCAAAATAATACTTCGCCATCAGGCATTCCGTTGGC
ATTATCGCATCTCACCCTTTTATCGGCTTGTTCCGCTTGTGTGTATGGTG
TTGGTGTATACAGCATAGTTCACCGCGTGGTGAAACCTCCCCTCTCGTTT
GTCCTCGATAGACCCGTTCGAAGGCCTGCCGGAGGAATTGGACGACCCCC
CAGATGAGGATACGGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp6_S_contig10:757299..757966-

>mRNA_Ecto-sp6_S_contig10.493.1 ID=mRNA_Ecto-sp6_S_contig10.493.1|Name=mRNA_Ecto-sp6_S_contig10.493.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp6_S_contig10:757299..757966- (Ectocarpus species6 EcLAC_371)
ATGGTGGGAGGGTTGGGCAGAGTGTTCGTAGCCCAACCCGTGCCACCTCT
ACCTGGCATCCTCATCCAAGGCAAGGGTCGGCGACTTGCTTCTTCCCGCT
CCAGATGTGCGAAGTGGCGGTTGCGACTGCCTGCTGGAATCGAATGGGGT
ACGGGCGCTCGTTGTCGAGAAACTTGGCTTCGTGATCGACACCGGAAAAG
ACCCGTTCGAAGGCCTGCCGGAGGAATTGGACGACCCCCCAGATGA
back to top