mRNA_Ecto-sp6_S_contig1.11.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig1.11.1
Unique NamemRNA_Ecto-sp6_S_contig1.11.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig1.11.1 vs. uniprot
Match: D7FYN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN5_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.610e-82
Identity = 112/115 (97.39%), Postives = 114/115 (99.13%), Query Frame = 1 
Query:    1 MGTDFANWLIDCHRKYDKEFHFREPMSSPPDPACKHYKMANFGSGTNSRIFESHKTKVKLKAKKVYGTINFFEEKEDEFGLLVKFFSFQRWPKEVYRNTDPAKGLLVIANLDTGE 345
            MGTDFANWLIDCHRKYDKEFHFREPMSSPPDPAC+HYKMANFGSGTNSR+FESHKTKVKLKAKKVYGTINFFEEKEDEFGLLVKFFSFQRWPKEVY NTDPAKGLLVIANLDTGE
Sbjct:    1 MGTDFANWLIDCHRKYDKEFHFREPMSSPPDPACRHYKMANFGSGTNSRVFESHKTKVKLKAKKVYGTINFFEEKEDEFGLLVKFFSFQRWPKEVYGNTDPAKGLLVIANLDTGE 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig1.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYN5_ECTSI1.610e-8297.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig1contigEcto-sp6_S_contig1:114557..115564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size354
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000100.1
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682348646.5274858-CDS-Ecto-sp6_S_contig1:114556..1145981682348646.5274858-CDS-Ecto-sp6_S_contig1:114556..114598Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 114557..114598 +
1682348646.5378065-CDS-Ecto-sp6_S_contig1:115120..1153031682348646.5378065-CDS-Ecto-sp6_S_contig1:115120..115303Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 115121..115303 +
1682348646.547633-CDS-Ecto-sp6_S_contig1:115435..1155641682348646.547633-CDS-Ecto-sp6_S_contig1:115435..115564Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig1 115436..115564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig1.11.1prot_Ecto-sp6_S_contig1.11.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig1 114557..115564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig1.11.1

>prot_Ecto-sp6_S_contig1.11.1 ID=prot_Ecto-sp6_S_contig1.11.1|Name=mRNA_Ecto-sp6_S_contig1.11.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=118bp
MGTDFANWLIDCHRKYDKEFHFREPMSSPPDPACKHYKMANFGSGTNSRI
FESHKTKVKLKAKKVYGTINFFEEKEDEFGLLVKFFSFQRWPKEVYRNTD
PAKGLLVIANLDTGEVS*
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mRNA from alignment at Ecto-sp6_S_contig1:114557..115564+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig1.11.1 ID=mRNA_Ecto-sp6_S_contig1.11.1|Name=mRNA_Ecto-sp6_S_contig1.11.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1008bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:114557..115564+ (Ectocarpus species6 EcLAC_371)
ATGGGCACGGATTTCGCGAACTGGCTAATCGACTGCCACAGGGTAAGCAC
GCGTTTCTATGTGCTCCAAGTGCCTAGAAACATTATTTGACTCATGGGAA
ACATCCCACGTCGCTGTGCAAGTTTGAGTGTTGCTTGGGTCCTGATCACC
ATTGTTTGGGGCGTACGTAAGTATGCGTCTGGCCCGTTGACGGGGAATGC
CAGCAGTCCTCATGCATGCCATATCGAACGCGGTTGTCGTGGGTGGAACA
GCAGTTCATGAAATGACAGGGCTTGTTTTCGGATTTCATGAGCATTCCAC
GAGGTTTTGACTTGGGCATGTGCTGCAGAGTCGTCGGAGATCGATGCTTT
TGATACGATGTGCAGAGGAAAAAAATATTGGTTTCAAGGGCGACCGAGAA
TTCGAATGTCGTTGTTCCTTCGGGCGCTGCAGTGTGCCCCTCTCACAGCT
GCACGTCGTTCGGAGAGTGCTTGGACCTCTCAGAGTAGCCACTGACAAAA
AATTCGTTTCTACTTGTCCTACTTTCCCCTGCCGTTGTTTGGTCAACGCT
TGACATTCGTTCAGAAGTACGACAAGGAGTTCCACTTCCGCGAACCCATG
TCGTCACCTCCAGATCCGGCGTGTAAGCACTACAAGATGGCGAATTTCGG
AAGCGGGACGAACTCACGAATATTCGAATCCCACAAGACGAAAGTGAAGC
TGAAGGCCAAGAAAGTGTACGGAACGATCAATTTCTTCGAAGAGAAGGTC
TGATGTGCGAAATCGCACAGTCGTGGTTGCTATGAAAGCCTCGTTTTCGA
ACAACTTTGGAGGTTACTCTTCTGCACCCTCAGCTGAGCAATCACTACCA
CGCTATTCTCTTGCGCGTGGAAACGTCAGGAGGATGAATTTGGACTTCTT
GTTAAATTCTTCAGTTTCCAGCGTTGGCCAAAGGAGGTGTACCGCAACAC
GGACCCTGCGAAAGGCCTCCTCGTAATCGCGAACCTTGACACCGGGGAGG
TGAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig1:114557..115564+

>mRNA_Ecto-sp6_S_contig1.11.1 ID=mRNA_Ecto-sp6_S_contig1.11.1|Name=mRNA_Ecto-sp6_S_contig1.11.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp6_S_contig1:114557..115564+ (Ectocarpus species6 EcLAC_371)
ATGGGCACGGATTTCGCGAACTGGCTAATCGACTGCCACAGGAAGTACGA
CAAGGAGTTCCACTTCCGCGAACCCATGTCGTCACCTCCAGATCCGGCGT
GTAAGCACTACAAGATGGCGAATTTCGGAAGCGGGACGAACTCACGAATA
TTCGAATCCCACAAGACGAAAGTGAAGCTGAAGGCCAAGAAAGTGTACGG
AACGATCAATTTCTTCGAAGAGAAGGAGGATGAATTTGGACTTCTTGTTA
AATTCTTCAGTTTCCAGCGTTGGCCAAAGGAGGTGTACCGCAACACGGAC
CCTGCGAAAGGCCTCCTCGTAATCGCGAACCTTGACACCGGGGAGGTGAG
CTGA
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