mRNA_Ecto-sp6_S_contig99.18839.1 (mRNA) Ectocarpus species6 EcLAC_371

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp6_S_contig99.18839.1
Unique NamemRNA_Ecto-sp6_S_contig99.18839.1
TypemRNA
OrganismEctocarpus species6 EcLAC_371 (Ectocarpus species6 EcLAC_371)
Homology
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BLAST of mRNA_Ecto-sp6_S_contig99.18839.1 vs. uniprot
Match: D8LSZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ4_ECTSI)

HSP 1 Score: 622 bits (1604), Expect = 6.960e-222
Identity = 394/411 (95.86%), Postives = 398/411 (96.84%), Query Frame = 1 
Query:    1 MRRARRRCWSVTLALLLTYAVVSTVVFLQPPLHPVGPSTKPSTTISGNQRTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVIVEREDDLACLSSYLRQSVTAIAVAPPPSPSSPGGSLHSGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGLFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRRHLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWGQGEIQGCAVE 1233
            MRRARRRCWSV LALLLTYAVVSTV+FL+PPLHPVGPSTKPSTTISGNQRTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHV+VEREDDLACLSSYLRQSVTAIA+AP       GGSLHSGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLG FLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   TVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGR HLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWGQGEIQGCAVE
Sbjct:    1 MRRARRRCWSVALALLLTYAVVSTVLFLRPPLHPVGPSTKPSTTISGNQRTRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVVVEREDDLACLSSYLRQSVTAIAIAPXXXXXXXGGSLHSGGGDTRGVVQNAKMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGPFLDAVAREWDELDRKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---TVMIFADAGGHTVPVCRGCDRAHSGVVALARGHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRWHLSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEWGQGEIQGCAVE 408
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp6_S_contig99.18839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSZ4_ECTSI6.960e-22295.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp6_S_contig99contigEcto-sp6_S_contig99:260449..261684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species6 EcLAC_371 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score620.9
Seed ortholog evalue4.2e-175
Seed eggNOG ortholog2880.D8LSZ4
Model size1236
Hectar predicted targeting categorychloroplast
Exons1
EggNOG OGs2EYNU@1,2T04Z@2759
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-26_001980.1
Cds size1236
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1682350610.5206206-CDS-Ecto-sp6_S_contig99:260448..2616841682350610.5206206-CDS-Ecto-sp6_S_contig99:260448..261684Ectocarpus species6 EcLAC_371CDSEcto-sp6_S_contig99 260449..261684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp6_S_contig99.18839.1prot_Ecto-sp6_S_contig99.18839.1Ectocarpus species6 EcLAC_371polypeptideEcto-sp6_S_contig99 260449..261684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp6_S_contig99.18839.1

>prot_Ecto-sp6_S_contig99.18839.1 ID=prot_Ecto-sp6_S_contig99.18839.1|Name=mRNA_Ecto-sp6_S_contig99.18839.1|organism=Ectocarpus species6 EcLAC_371|type=polypeptide|length=412bp
MRRARRRCWSVTLALLLTYAVVSTVVFLQPPLHPVGPSTKPSTTISGNQR
TRQQPRLRSASGADSIVFVALGPAARSASLLYALTSLREEGGWDGQVHVI
VEREDDLACLSSYLRQSVTAIAVAPPPSPSSPGGSLHSGGGDTRGVVQNA
KMAKMKLLDLLPPSVERVVYVDCDVVTQRPLGLFLDAVAREWDELDRKAA
AAAAAAAAAATAAVEGPATTRSPPKKGVVNSRLRGGRDDGNEVFAPPPPQ
PMSGDGDTNRRSPPPPPPSTVMIFADAGGHTVPVCRGCDRAHSGVVALAR
GHSERCLKLWHDAFEGDGAGNGGTSTDQEALDAALGEGSGCEAIMMGRRH
LSFMKDAFVMAGLTRTSTFGHYTGLLHPKTLGKVYRRFYEWALGMSFEEW
GQGEIQGCAVE*
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mRNA from alignment at Ecto-sp6_S_contig99:260449..261684-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp6_S_contig99.18839.1 ID=mRNA_Ecto-sp6_S_contig99.18839.1|Name=mRNA_Ecto-sp6_S_contig99.18839.1|organism=Ectocarpus species6 EcLAC_371|type=mRNA|length=1236bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:260449..261684- (Ectocarpus species6 EcLAC_371)
ATGCGACGAGCGAGACGGAGGTGCTGGTCCGTCACCCTGGCCCTCCTGCT
AACGTACGCCGTCGTCAGCACCGTCGTTTTCTTGCAGCCTCCGCTCCACC
CGGTCGGCCCCTCCACCAAACCCAGCACCACCATCTCCGGCAACCAGCGG
ACACGACAGCAACCCAGGCTCCGATCGGCTTCGGGGGCCGACTCGATCGT
CTTCGTTGCCCTGGGCCCCGCGGCGCGGTCGGCCTCGCTGCTGTACGCCC
TGACGTCGCTTAGAGAGGAGGGAGGCTGGGACGGCCAGGTGCACGTGATC
GTTGAGCGCGAGGATGACCTGGCCTGCCTCTCGTCGTACCTTCGCCAGTC
CGTCACGGCCATCGCTGTCGCACCACCGCCGTCGCCGTCCTCACCCGGCG
GTAGTCTTCATTCCGGTGGCGGGGACACGAGAGGGGTGGTGCAGAACGCC
AAGATGGCGAAGATGAAGCTCCTGGACCTACTTCCGCCCTCGGTGGAGCG
CGTGGTGTACGTGGACTGTGACGTCGTCACCCAGCGGCCTCTCGGGCTTT
TCCTCGACGCCGTCGCCCGCGAGTGGGACGAGCTGGACAGAAAAGCGGCA
GCGGCAGCGGCAGCGGCGGCGGCAGCGGCGACAGCTGCGGTGGAAGGGCC
AGCGACAACCAGGTCGCCGCCGAAAAAAGGAGTAGTGAACTCACGCTTGC
GAGGAGGGCGTGATGATGGCAACGAGGTATTTGCTCCTCCTCCTCCTCAG
CCGATGAGCGGCGACGGTGACACCAACCGACGGTCGCCGCCGCCGCCACC
GCCGTCGACAGTGATGATCTTCGCGGACGCGGGCGGGCACACGGTCCCCG
TTTGCCGGGGCTGCGACCGGGCACACTCGGGGGTGGTGGCCCTGGCGCGT
GGGCACTCCGAGCGGTGCCTGAAGCTTTGGCACGACGCTTTCGAGGGAGA
CGGCGCGGGAAACGGGGGCACGTCCACGGACCAAGAAGCGCTGGACGCGG
CGCTCGGGGAGGGGTCGGGCTGCGAGGCGATCATGATGGGCCGGCGGCAC
CTCTCGTTCATGAAGGACGCGTTTGTCATGGCCGGGCTGACGAGGACGAG
CACGTTCGGCCACTACACGGGGCTGCTTCACCCGAAGACCCTGGGCAAGG
TCTACCGGAGGTTTTACGAGTGGGCCCTTGGGATGAGCTTCGAGGAGTGG
GGGCAAGGAGAGATCCAGGGCTGCGCGGTCGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp6_S_contig99:260449..261684-

>mRNA_Ecto-sp6_S_contig99.18839.1 ID=mRNA_Ecto-sp6_S_contig99.18839.1|Name=mRNA_Ecto-sp6_S_contig99.18839.1|organism=Ectocarpus species6 EcLAC_371|type=CDS|length=1236bp|location=Sequence derived from alignment at Ecto-sp6_S_contig99:260449..261684- (Ectocarpus species6 EcLAC_371)
ATGCGACGAGCGAGACGGAGGTGCTGGTCCGTCACCCTGGCCCTCCTGCT
AACGTACGCCGTCGTCAGCACCGTCGTTTTCTTGCAGCCTCCGCTCCACC
CGGTCGGCCCCTCCACCAAACCCAGCACCACCATCTCCGGCAACCAGCGG
ACACGACAGCAACCCAGGCTCCGATCGGCTTCGGGGGCCGACTCGATCGT
CTTCGTTGCCCTGGGCCCCGCGGCGCGGTCGGCCTCGCTGCTGTACGCCC
TGACGTCGCTTAGAGAGGAGGGAGGCTGGGACGGCCAGGTGCACGTGATC
GTTGAGCGCGAGGATGACCTGGCCTGCCTCTCGTCGTACCTTCGCCAGTC
CGTCACGGCCATCGCTGTCGCACCACCGCCGTCGCCGTCCTCACCCGGCG
GTAGTCTTCATTCCGGTGGCGGGGACACGAGAGGGGTGGTGCAGAACGCC
AAGATGGCGAAGATGAAGCTCCTGGACCTACTTCCGCCCTCGGTGGAGCG
CGTGGTGTACGTGGACTGTGACGTCGTCACCCAGCGGCCTCTCGGGCTTT
TCCTCGACGCCGTCGCCCGCGAGTGGGACGAGCTGGACAGAAAAGCGGCA
GCGGCAGCGGCAGCGGCGGCGGCAGCGGCGACAGCTGCGGTGGAAGGGCC
AGCGACAACCAGGTCGCCGCCGAAAAAAGGAGTAGTGAACTCACGCTTGC
GAGGAGGGCGTGATGATGGCAACGAGGTATTTGCTCCTCCTCCTCCTCAG
CCGATGAGCGGCGACGGTGACACCAACCGACGGTCGCCGCCGCCGCCACC
GCCGTCGACAGTGATGATCTTCGCGGACGCGGGCGGGCACACGGTCCCCG
TTTGCCGGGGCTGCGACCGGGCACACTCGGGGGTGGTGGCCCTGGCGCGT
GGGCACTCCGAGCGGTGCCTGAAGCTTTGGCACGACGCTTTCGAGGGAGA
CGGCGCGGGAAACGGGGGCACGTCCACGGACCAAGAAGCGCTGGACGCGG
CGCTCGGGGAGGGGTCGGGCTGCGAGGCGATCATGATGGGCCGGCGGCAC
CTCTCGTTCATGAAGGACGCGTTTGTCATGGCCGGGCTGACGAGGACGAG
CACGTTCGGCCACTACACGGGGCTGCTTCACCCGAAGACCCTGGGCAAGG
TCTACCGGAGGTTTTACGAGTGGGCCCTTGGGATGAGCTTCGAGGAGTGG
GGGCAAGGAGAGATCCAGGGCTGCGCGGTCGAGTGA
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